Wall clock time and date at job start Tue Mar 31 2020 03:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00108 * 2 1 4 4 H 1.08997 * 109.46749 * 30.00042 * 3 2 1 5 5 C 1.53006 * 109.46881 * 270.00085 * 3 2 1 6 6 N 1.46898 * 109.47006 * 64.99925 * 5 3 2 7 7 C 1.46903 * 110.99673 * 179.97438 * 6 5 3 8 8 C 1.53003 * 109.46899 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47027 * 60.00056 * 8 7 6 10 10 O 1.42899 * 109.47310 * 300.00529 * 8 7 6 11 11 C 1.52998 * 109.47202 * 180.02562 * 8 7 6 12 12 N 1.46899 * 109.47362 * 185.00011 * 11 8 7 13 13 C 1.46900 * 110.99753 * 66.04994 * 12 11 8 14 14 C 1.46903 * 111.00031 * 189.99799 * 12 11 8 15 15 C 1.50707 * 109.46615 * 169.99933 * 14 12 11 16 16 H 1.07994 * 120.00516 * 0.02562 * 15 14 12 17 17 C 1.37879 * 119.99278 * 180.02562 * 15 14 12 18 18 N 1.31516 * 120.00323 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99680 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47205 * 59.99615 * 19 17 15 21 21 H 1.48502 * 109.46924 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47127 * 299.99888 * 19 17 15 23 23 C 1.52999 * 109.47261 * 150.00232 * 3 2 1 24 24 C 1.52998 * 117.49753 * 8.74507 * 23 3 2 25 25 C 1.53005 * 117.49784 * 300.08750 * 23 3 2 26 26 H 1.09000 * 109.47339 * 299.99792 * 1 2 3 27 27 H 1.08997 * 109.47419 * 60.00026 * 1 2 3 28 28 H 1.09002 * 109.47227 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47002 * 184.99708 * 5 3 2 30 30 H 1.08993 * 109.46955 * 305.00145 * 5 3 2 31 31 H 1.00906 * 111.00348 * 56.04933 * 6 5 3 32 32 H 1.08993 * 109.47323 * 299.99830 * 7 6 5 33 33 H 1.08995 * 109.46831 * 60.00909 * 7 6 5 34 34 H 0.96700 * 113.99588 * 299.99547 * 10 8 7 35 35 H 1.08996 * 109.47250 * 305.00541 * 11 8 7 36 36 H 1.09005 * 109.47205 * 64.99852 * 11 8 7 37 37 H 1.08999 * 109.47704 * 59.99791 * 13 12 11 38 38 H 1.08998 * 109.47140 * 180.02562 * 13 12 11 39 39 H 1.09008 * 109.46978 * 299.99838 * 13 12 11 40 40 H 1.08990 * 109.47139 * 290.00337 * 14 12 11 41 41 H 1.08997 * 109.46752 * 50.00782 * 14 12 11 42 42 H 0.96997 * 119.99563 * 180.02562 * 18 17 15 43 43 H 1.08997 * 115.54998 * 154.41537 * 23 3 2 44 44 H 1.09002 * 117.50180 * 0.02562 * 24 23 3 45 45 H 1.09003 * 117.50053 * 145.01924 * 24 23 3 46 46 H 1.08995 * 117.49529 * 214.98012 * 25 23 3 47 47 H 1.09003 * 117.49466 * 359.97236 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2176 1.7713 -1.4426 6 7 0.9128 1.9268 -2.0993 7 6 1.0731 2.3747 -3.4892 8 6 -0.3041 2.5243 -4.1388 9 1 -0.8889 3.2591 -3.5854 10 8 -0.9795 1.2652 -4.1189 11 6 -0.1372 2.9902 -5.5865 12 7 -1.4589 3.2488 -6.1732 13 6 -2.1141 4.3861 -5.5135 14 6 -1.3579 3.4676 -7.6223 15 6 -2.7391 3.4845 -8.2251 16 1 -3.6051 3.3470 -7.5947 17 6 -2.8969 3.6756 -9.5814 18 7 -1.8423 3.8437 -10.3490 19 14 -4.6089 3.6973 -10.3285 20 1 -5.4021 4.7937 -9.7170 21 1 -4.5068 3.9184 -11.7935 22 1 -5.2787 2.3976 -10.0690 23 6 3.3589 1.2632 0.7212 24 6 3.9152 -0.1110 1.0990 25 6 3.3638 0.8166 2.1846 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 2.7413 2.7273 -1.4439 30 1 2.8098 1.0318 -1.9816 31 1 0.3206 2.5592 -1.5820 32 1 1.5886 3.3349 -3.5043 33 1 1.6574 1.6397 -4.0426 34 1 -0.5150 0.5622 -4.5934 35 1 0.4552 3.9049 -5.6079 36 1 0.3702 2.2154 -6.1613 37 1 -1.4989 5.2782 -5.6310 38 1 -3.0908 4.5556 -5.9667 39 1 -2.2391 4.1681 -4.4528 40 1 -0.8668 4.4219 -7.8123 41 1 -0.7754 2.6633 -8.0714 42 1 -1.9535 3.9785 -11.3031 43 1 4.0735 2.0320 0.4272 44 1 3.3206 -0.9851 0.8335 45 1 4.9959 -0.2463 1.0539 46 1 4.0819 1.2914 2.8532 47 1 2.4061 0.5534 2.6336 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517230802.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:06 Heat of formation + Delta-G solvation = -63.058991 kcal Electronic energy + Delta-G solvation = -23037.596638 eV Core-core repulsion = 19642.572028 eV Total energy + Delta-G solvation = -3395.024610 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 286.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.36100 -38.14179 -36.28970 -35.80464 -34.77192 -32.50951 -30.67777 -28.80992 -27.10716 -26.48209 -25.50554 -23.70064 -22.78259 -22.36046 -21.38967 -20.49946 -20.14793 -17.09021 -16.55259 -16.36617 -16.22385 -15.70598 -15.47169 -14.94600 -14.78352 -14.55533 -14.31106 -14.25024 -13.51446 -13.43878 -13.23970 -12.96221 -12.57909 -12.15459 -11.96568 -11.87195 -11.72774 -11.50651 -11.35201 -11.28291 -11.08699 -10.89001 -10.76256 -10.66516 -10.63808 -10.32659 -10.27738 -9.98817 -9.73718 -9.48313 -9.08514 -8.47192 -8.42443 -7.19535 -6.01794 -4.02837 3.34924 3.38074 3.38452 3.42157 3.73396 3.83236 4.42472 4.50829 4.59370 4.67672 4.74914 4.85837 4.97178 5.00173 5.12917 5.21803 5.28490 5.32920 5.33656 5.40427 5.41061 5.54416 5.57164 5.62227 5.68034 5.71594 5.73631 5.85200 5.96747 6.03190 6.05247 6.18320 6.29445 6.41078 6.75429 6.78491 7.08970 7.19898 7.27640 7.32801 7.80965 8.05498 8.15215 8.21738 8.56093 9.04826 9.61227 11.09135 Molecular weight = 286.20amu Principal moments of inertia in cm(-1) A = 0.044420 B = 0.002431 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.197057 B =11517.331656 C =11743.869379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.376 6.376 3 C 0.125 3.875 4 H 0.060 0.940 5 C 0.039 3.961 6 N -0.675 5.675 7 C 0.026 3.974 8 C 0.117 3.883 9 H 0.091 0.909 10 O -0.536 6.536 11 C 0.025 3.975 12 N -0.529 5.529 13 C 0.036 3.964 14 C 0.193 3.807 15 C -0.506 4.506 16 H 0.063 0.937 17 C 0.054 3.946 18 N -0.901 5.901 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.275 1.275 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.176 4.176 26 H 0.028 0.972 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.034 0.966 30 H 0.081 0.919 31 H 0.337 0.663 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.369 0.631 35 H 0.026 0.974 36 H 0.070 0.930 37 H 0.007 0.993 38 H 0.075 0.925 39 H 0.046 0.954 40 H -0.011 1.011 41 H 0.028 0.972 42 H 0.261 0.739 43 H 0.112 0.888 44 H 0.107 0.893 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.724 -3.979 22.726 25.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.294 6.294 3 C 0.066 3.934 4 H 0.078 0.922 5 C -0.090 4.090 6 N -0.305 5.305 7 C -0.103 4.103 8 C 0.057 3.943 9 H 0.109 0.891 10 O -0.340 6.340 11 C -0.105 4.105 12 N -0.253 5.253 13 C -0.112 4.112 14 C 0.068 3.932 15 C -0.544 4.544 16 H 0.082 0.918 17 C -0.147 4.147 18 N -0.540 5.540 19 Si 0.727 3.273 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.201 1.201 23 C -0.180 4.180 24 C -0.199 4.199 25 C -0.213 4.213 26 H 0.046 0.954 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.154 0.846 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.215 0.785 35 H 0.044 0.956 36 H 0.089 0.911 37 H 0.026 0.974 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.006 0.994 41 H 0.046 0.954 42 H 0.071 0.929 43 H 0.130 0.870 44 H 0.125 0.875 45 H 0.108 0.892 46 H 0.110 0.890 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.106 -4.856 22.769 25.380 hybrid contribution 0.290 1.790 -0.948 2.046 sum 10.396 -3.066 21.821 24.364 Atomic orbital electron populations 1.22943 0.80438 1.02591 1.01079 1.87836 1.20273 1.26366 1.94947 1.21432 0.92773 0.85569 0.93618 0.92227 1.22537 0.91550 0.99820 0.95111 1.60417 1.13298 1.54269 1.02543 1.22741 0.98816 0.98992 0.89795 1.21865 0.90751 0.87133 0.94573 0.89094 1.86572 1.50553 1.19121 1.77739 1.22726 0.92818 0.99760 0.95193 1.62029 1.16963 1.39704 1.06642 1.22256 1.00377 0.90984 0.97614 1.19738 0.97667 0.95160 0.80642 1.21132 0.92521 1.48401 0.92371 0.91841 1.25003 0.97066 0.95495 0.97175 1.69951 1.28952 1.49878 1.05250 0.86539 0.84316 0.78659 0.77763 1.20309 1.21400 1.20092 1.22376 0.97962 1.00043 0.97656 1.22866 1.00325 0.94403 1.02281 1.22923 1.03027 1.04326 0.91030 0.95360 0.90620 0.90416 0.94744 0.90037 0.84575 0.94696 0.90580 0.78487 0.95622 0.91112 0.97415 0.90649 0.93563 0.99364 0.95354 0.92907 0.87006 0.87458 0.89229 0.88993 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.69 101.05 1.08 1.33 16 2 O -0.38 -4.02 8.70 -35.23 -0.31 -4.33 16 3 C 0.12 1.12 2.77 -26.73 -0.07 1.04 16 4 H 0.06 0.51 7.79 -51.93 -0.40 0.10 16 5 C 0.04 0.37 5.33 -3.82 -0.02 0.35 16 6 N -0.67 -6.98 4.37 -113.78 -0.50 -7.47 16 7 C 0.03 0.30 5.35 -3.82 -0.02 0.28 16 8 C 0.12 1.65 3.13 -26.73 -0.08 1.57 16 9 H 0.09 1.32 6.34 -51.93 -0.33 0.99 16 10 O -0.54 -8.39 13.15 -35.23 -0.46 -8.86 16 11 C 0.02 0.43 4.59 -3.83 -0.02 0.41 16 12 N -0.53 -11.53 4.70 -244.37 -1.15 -12.68 16 13 C 0.04 0.72 9.14 60.06 0.55 1.27 16 14 C 0.19 5.09 4.72 -4.97 -0.02 5.07 16 15 C -0.51 -14.41 8.46 -34.44 -0.29 -14.71 16 16 H 0.06 1.80 7.12 -52.49 -0.37 1.43 16 17 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 19 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C -0.16 -1.29 5.71 -90.62 -0.52 -1.80 16 24 C -0.16 -1.30 9.88 -26.69 -0.26 -1.57 16 25 C -0.18 -1.30 10.19 -26.69 -0.27 -1.57 16 26 H 0.03 0.24 8.08 -51.93 -0.42 -0.18 16 27 H 0.08 0.82 6.20 -51.93 -0.32 0.50 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.34 3.29 8.66 -39.29 -0.34 2.95 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.37 4.94 9.04 45.56 0.41 5.35 16 35 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 36 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 37 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 38 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 39 H 0.05 0.79 6.37 -51.92 -0.33 0.46 16 40 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 41 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.11 0.77 8.11 -51.93 -0.42 0.35 16 44 H 0.11 1.01 7.07 -51.93 -0.37 0.64 16 45 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 375.72 15.07 5.66 5.66 Total: -1.00 -31.25 375.72 -8.94 -40.19 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.85 Total: 3.74 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -0.05 Total: -6.89 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.91 Total: -46.39 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.77 Total: -13.19 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.25 -8.94 -40.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517230802.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.865 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds