Wall clock time and date at job start Tue Mar 31 2020 03:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00108 * 2 1 4 4 H 1.08997 * 109.46749 * 30.00042 * 3 2 1 5 5 C 1.53006 * 109.46881 * 270.00085 * 3 2 1 6 6 N 1.46898 * 109.47006 * 64.99925 * 5 3 2 7 7 C 1.46903 * 110.99673 * 179.97438 * 6 5 3 8 8 C 1.53003 * 109.46899 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47027 * 60.00056 * 8 7 6 10 10 O 1.42899 * 109.47310 * 300.00529 * 8 7 6 11 11 C 1.52998 * 109.47202 * 180.02562 * 8 7 6 12 12 N 1.46899 * 109.47362 * 185.00011 * 11 8 7 13 13 C 1.46900 * 110.99753 * 66.04994 * 12 11 8 14 14 C 1.46903 * 111.00031 * 189.99799 * 12 11 8 15 15 C 1.50707 * 109.46615 * 169.99933 * 14 12 11 16 16 H 1.07994 * 120.00516 * 0.02562 * 15 14 12 17 17 C 1.37879 * 119.99278 * 180.02562 * 15 14 12 18 18 N 1.31516 * 120.00323 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99680 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47205 * 59.99615 * 19 17 15 21 21 H 1.48502 * 109.46924 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47127 * 299.99888 * 19 17 15 23 23 C 1.52999 * 109.47261 * 150.00232 * 3 2 1 24 24 C 1.52998 * 117.49753 * 8.74507 * 23 3 2 25 25 C 1.53005 * 117.49784 * 300.08750 * 23 3 2 26 26 H 1.09000 * 109.47339 * 299.99792 * 1 2 3 27 27 H 1.08997 * 109.47419 * 60.00026 * 1 2 3 28 28 H 1.09002 * 109.47227 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47002 * 184.99708 * 5 3 2 30 30 H 1.08993 * 109.46955 * 305.00145 * 5 3 2 31 31 H 1.00906 * 111.00348 * 56.04933 * 6 5 3 32 32 H 1.08993 * 109.47323 * 299.99830 * 7 6 5 33 33 H 1.08995 * 109.46831 * 60.00909 * 7 6 5 34 34 H 0.96700 * 113.99588 * 299.99547 * 10 8 7 35 35 H 1.08996 * 109.47250 * 305.00541 * 11 8 7 36 36 H 1.09005 * 109.47205 * 64.99852 * 11 8 7 37 37 H 1.08999 * 109.47704 * 59.99791 * 13 12 11 38 38 H 1.08998 * 109.47140 * 180.02562 * 13 12 11 39 39 H 1.09008 * 109.46978 * 299.99838 * 13 12 11 40 40 H 1.08990 * 109.47139 * 290.00337 * 14 12 11 41 41 H 1.08997 * 109.46752 * 50.00782 * 14 12 11 42 42 H 0.96997 * 119.99563 * 180.02562 * 18 17 15 43 43 H 1.08997 * 115.54998 * 154.41537 * 23 3 2 44 44 H 1.09002 * 117.50180 * 0.02562 * 24 23 3 45 45 H 1.09003 * 117.50053 * 145.01924 * 24 23 3 46 46 H 1.08995 * 117.49529 * 214.98012 * 25 23 3 47 47 H 1.09003 * 117.49466 * 359.97236 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2176 1.7713 -1.4426 6 7 0.9128 1.9268 -2.0993 7 6 1.0731 2.3747 -3.4892 8 6 -0.3041 2.5243 -4.1388 9 1 -0.8889 3.2591 -3.5854 10 8 -0.9795 1.2652 -4.1189 11 6 -0.1372 2.9902 -5.5865 12 7 -1.4589 3.2488 -6.1732 13 6 -2.1141 4.3861 -5.5135 14 6 -1.3579 3.4676 -7.6223 15 6 -2.7391 3.4845 -8.2251 16 1 -3.6051 3.3470 -7.5947 17 6 -2.8969 3.6756 -9.5814 18 7 -1.8423 3.8437 -10.3490 19 14 -4.6089 3.6973 -10.3285 20 1 -5.4021 4.7937 -9.7170 21 1 -4.5068 3.9184 -11.7935 22 1 -5.2787 2.3976 -10.0690 23 6 3.3589 1.2632 0.7212 24 6 3.9152 -0.1110 1.0990 25 6 3.3638 0.8166 2.1846 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 2.7413 2.7273 -1.4439 30 1 2.8098 1.0318 -1.9816 31 1 0.3206 2.5592 -1.5820 32 1 1.5886 3.3349 -3.5043 33 1 1.6574 1.6397 -4.0426 34 1 -0.5150 0.5622 -4.5934 35 1 0.4552 3.9049 -5.6079 36 1 0.3702 2.2154 -6.1613 37 1 -1.4989 5.2782 -5.6310 38 1 -3.0908 4.5556 -5.9667 39 1 -2.2391 4.1681 -4.4528 40 1 -0.8668 4.4219 -7.8123 41 1 -0.7754 2.6633 -8.0714 42 1 -1.9535 3.9785 -11.3031 43 1 4.0735 2.0320 0.4272 44 1 3.3206 -0.9851 0.8335 45 1 4.9959 -0.2463 1.0539 46 1 4.0819 1.2914 2.8532 47 1 2.4061 0.5534 2.6336 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517230802.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:06 Heat of formation + Delta-G solvation = -86.858593 kcal Electronic energy + Delta-G solvation = -23038.628666 eV Core-core repulsion = 19642.572028 eV Total energy + Delta-G solvation = -3396.056638 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 286.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.11582 -39.39876 -37.37445 -36.84621 -35.81961 -34.61785 -31.73723 -30.04205 -28.89663 -27.57484 -26.73655 -25.14971 -23.56707 -23.04476 -22.74867 -21.75440 -21.19007 -18.56761 -17.91662 -17.28348 -17.17747 -16.89513 -16.68239 -16.38936 -15.95137 -15.73210 -15.51339 -15.33403 -14.95682 -14.66359 -14.21399 -14.08757 -13.84680 -13.60467 -13.25265 -13.04176 -12.85390 -12.72133 -12.56399 -12.53471 -12.40532 -12.33425 -12.14262 -12.03762 -11.98692 -11.62582 -11.40619 -11.25211 -10.97046 -10.73495 -10.62006 -10.30713 -9.26791 -8.96470 -8.21222 -6.31253 1.40699 1.44181 1.52114 2.39820 2.73080 2.88669 3.10854 3.12249 3.40313 3.71742 3.88443 3.91127 4.01221 4.05487 4.14685 4.28228 4.33892 4.35435 4.40021 4.52303 4.57455 4.61862 4.63857 4.69271 4.72552 4.76981 4.83198 4.86679 4.99540 5.05514 5.07663 5.14135 5.16220 5.20107 5.27864 5.30843 5.39995 5.63877 5.95266 6.04903 6.31233 6.34371 6.45320 6.63291 6.84571 7.03146 7.38360 8.89524 Molecular weight = 286.20amu Principal moments of inertia in cm(-1) A = 0.044420 B = 0.002431 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.197057 B =11517.331656 C =11743.869379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.392 6.392 3 C 0.124 3.876 4 H 0.066 0.934 5 C 0.045 3.955 6 N -0.679 5.679 7 C 0.039 3.961 8 C 0.131 3.869 9 H 0.093 0.907 10 O -0.553 6.553 11 C 0.024 3.976 12 N -0.541 5.541 13 C 0.040 3.960 14 C 0.208 3.792 15 C -0.524 4.524 16 H 0.061 0.939 17 C 0.000 4.000 18 N -0.935 5.935 19 Si 0.970 3.030 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.269 1.269 23 C -0.165 4.165 24 C -0.170 4.170 25 C -0.170 4.170 26 H 0.039 0.961 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.342 0.658 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.377 0.623 35 H 0.032 0.968 36 H 0.066 0.934 37 H 0.011 0.989 38 H 0.054 0.946 39 H 0.078 0.922 40 H -0.039 1.039 41 H 0.003 0.997 42 H 0.265 0.735 43 H 0.125 0.875 44 H 0.090 0.910 45 H 0.100 0.900 46 H 0.107 0.893 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.539 -3.651 24.159 26.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.311 6.311 3 C 0.065 3.935 4 H 0.084 0.916 5 C -0.085 4.085 6 N -0.311 5.311 7 C -0.091 4.091 8 C 0.071 3.929 9 H 0.110 0.890 10 O -0.358 6.358 11 C -0.105 4.105 12 N -0.265 5.265 13 C -0.108 4.108 14 C 0.082 3.918 15 C -0.562 4.562 16 H 0.079 0.921 17 C -0.198 4.198 18 N -0.575 5.575 19 Si 0.795 3.205 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.194 1.194 23 C -0.183 4.183 24 C -0.207 4.207 25 C -0.207 4.207 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.160 0.840 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.225 0.775 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.030 0.970 38 H 0.073 0.927 39 H 0.096 0.904 40 H -0.022 1.022 41 H 0.021 0.979 42 H 0.073 0.927 43 H 0.143 0.857 44 H 0.108 0.892 45 H 0.119 0.881 46 H 0.126 0.874 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.929 -4.532 24.232 26.577 hybrid contribution 0.397 1.666 -1.345 2.178 sum 10.326 -2.866 22.887 25.272 Atomic orbital electron populations 1.22926 0.80150 1.02743 1.01054 1.87829 1.20704 1.27537 1.95007 1.21517 0.93400 0.84995 0.93543 0.91586 1.22489 0.90860 1.00110 0.95000 1.60360 1.14107 1.54499 1.02096 1.22515 0.96749 0.99591 0.90241 1.21726 0.92372 0.86536 0.92304 0.88961 1.86539 1.51520 1.19798 1.77903 1.22839 0.90649 0.99958 0.97048 1.61938 1.19715 1.40518 1.04309 1.22239 0.99093 0.90567 0.98949 1.19386 0.96133 0.92608 0.83712 1.21441 0.93288 1.48561 0.92943 0.92058 1.25934 1.01387 0.94827 0.97651 1.70076 1.31305 1.50515 1.05628 0.85424 0.79104 0.79067 0.76955 1.19202 1.20751 1.19389 1.22453 0.97661 1.00220 0.98003 1.22857 1.00766 0.93962 1.03087 1.22971 1.03064 1.03706 0.90935 0.94198 0.91738 0.90282 0.93376 0.91228 0.83983 0.93668 0.90636 0.77518 0.95032 0.91575 0.97044 0.92671 0.90387 1.02156 0.97917 0.92667 0.85670 0.89179 0.88118 0.87442 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.69 113.37 1.21 1.72 16 2 O -0.39 -8.02 8.70 -148.98 -1.30 -9.31 16 3 C 0.12 2.02 2.77 30.60 0.08 2.10 16 4 H 0.07 0.99 7.79 -2.39 -0.02 0.97 16 5 C 0.04 0.75 5.33 86.31 0.46 1.21 16 6 N -0.68 -12.82 4.37 -513.89 -2.25 -15.06 16 7 C 0.04 0.81 5.35 86.30 0.46 1.27 16 8 C 0.13 3.50 3.13 30.59 0.10 3.59 16 9 H 0.09 2.47 6.34 -2.39 -0.02 2.45 16 10 O -0.55 -16.66 13.15 -148.98 -1.96 -18.62 16 11 C 0.02 0.83 4.59 86.30 0.40 1.23 16 12 N -0.54 -23.61 4.70 -927.04 -4.36 -27.97 16 13 C 0.04 1.55 9.14 127.69 1.17 2.71 16 14 C 0.21 11.27 4.72 85.56 0.40 11.68 16 15 C -0.52 -30.31 8.46 25.60 0.22 -30.09 16 16 H 0.06 3.50 7.12 -2.91 -0.02 3.48 16 17 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 18 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 19 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 C -0.16 -2.32 5.71 -10.79 -0.06 -2.38 16 24 C -0.17 -2.53 9.88 30.62 0.30 -2.23 16 25 C -0.17 -2.21 10.19 30.62 0.31 -1.90 16 26 H 0.04 0.62 8.08 -2.39 -0.02 0.60 16 27 H 0.06 1.33 6.20 -2.39 -0.01 1.31 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.34 5.94 8.66 -89.69 -0.78 5.16 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.38 9.83 9.04 -74.06 -0.67 9.16 16 35 H 0.03 1.05 8.12 -2.39 -0.02 1.03 16 36 H 0.07 2.29 7.93 -2.38 -0.02 2.27 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.05 2.35 6.76 -2.39 -0.02 2.33 16 39 H 0.08 2.52 6.37 -2.38 -0.02 2.50 16 40 H -0.04 -2.29 8.12 -2.39 -0.02 -2.31 16 41 H 0.00 0.16 7.93 -2.39 -0.02 0.14 16 42 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 43 H 0.13 1.42 8.11 -2.39 -0.02 1.40 16 44 H 0.09 1.67 7.07 -2.39 -0.02 1.65 16 45 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -66.99 375.72 -2.54 -69.53 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -0.50 Total: 21.70 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 5.51 Total: -10.63 kcal Atomic # 7 Polarization: -93.24 SS G_CDS: -6.32 Total: -99.56 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -3.25 Total: -27.93 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -66.99 -2.54 -69.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517230802.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.325 kcal (2) G-P(sol) polarization free energy of solvation -66.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds