Wall clock time and date at job start Tue Mar 31 2020 03:15:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46896 * 1
3 3 C 1.46896 * 111.00725 * 2 1
4 4 C 1.50696 * 109.47333 * 293.95867 * 3 2 1
5 5 H 1.08000 * 119.99684 * 359.97438 * 4 3 2
6 6 C 1.37878 * 120.00099 * 180.27084 * 4 3 2
7 7 N 1.31511 * 120.00169 * 359.72183 * 6 4 3
8 8 Si 1.86808 * 119.99922 * 179.72522 * 6 4 3
9 9 H 1.48504 * 109.47066 * 59.99897 * 8 6 4
10 10 H 1.48495 * 109.46787 * 179.97438 * 8 6 4
11 11 H 1.48496 * 109.46967 * 299.99954 * 8 6 4
12 12 C 1.46904 * 110.99935 * 123.96264 * 2 1 3
13 13 C 1.52996 * 109.47248 * 160.25224 * 12 2 1
14 14 H 1.09004 * 109.47646 * 57.27787 * 13 12 2
15 15 O 1.42902 * 109.47070 * 297.28128 * 13 12 2
16 16 C 1.53002 * 109.47367 * 177.27924 * 13 12 2
17 17 N 1.46897 * 109.47205 * 185.00008 * 16 13 12
18 18 C 1.46903 * 110.99742 * 180.02562 * 17 16 13
19 19 H 1.09000 * 110.01693 * 325.05968 * 18 17 16
20 20 C 1.53872 * 110.03817 * 86.45081 * 18 17 16
21 21 C 1.54259 * 106.59844 * 119.28127 * 20 18 17
22 22 C 1.54893 * 104.19828 * 23.61464 * 21 20 18
23 23 H 1.08994 * 110.75246 * 80.55301 * 22 21 20
24 24 C 1.52996 * 110.75903 * 203.73973 * 22 21 20
25 25 O 1.42901 * 109.47224 * 293.54996 * 24 22 21
26 26 C 1.54269 * 110.03180 * 203.61872 * 18 17 16
27 27 H 1.08997 * 109.47182 * 65.25860 * 1 2 3
28 28 H 1.09001 * 109.47451 * 185.26009 * 1 2 3
29 29 H 1.08998 * 109.46850 * 305.26191 * 1 2 3
30 30 H 1.08996 * 109.47506 * 173.95483 * 3 2 1
31 31 H 1.09004 * 109.46509 * 53.95533 * 3 2 1
32 32 H 0.96995 * 119.99931 * 180.02562 * 7 6 4
33 33 H 1.09002 * 109.46656 * 280.24831 * 12 2 1
34 34 H 1.08995 * 109.47470 * 40.24954 * 12 2 1
35 35 H 0.96696 * 113.99721 * 300.00125 * 15 13 12
36 36 H 1.09001 * 109.46908 * 305.00360 * 16 13 12
37 37 H 1.09007 * 109.46633 * 64.99564 * 16 13 12
38 38 H 1.00900 * 110.99885 * 303.94802 * 17 16 13
39 39 H 1.08998 * 110.03324 * 238.57337 * 20 18 17
40 40 H 1.09007 * 110.02592 * 359.95420 * 20 18 17
41 41 H 1.09000 * 110.48843 * 142.29163 * 21 20 18
42 42 H 1.09006 * 110.49262 * 264.93277 * 21 20 18
43 43 H 1.09004 * 109.46940 * 53.54651 * 24 22 21
44 44 H 1.08998 * 109.47314 * 173.54186 * 24 22 21
45 45 H 0.96699 * 114.00157 * 180.02562 * 25 24 22
46 46 H 1.08997 * 110.48374 * 335.78666 * 26 18 17
47 47 H 1.09003 * 110.48426 * 98.42120 * 26 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9956 1.3713 0.0000
4 6 1.6371 2.0471 -1.2983
5 1 1.0746 1.5113 -2.0487
6 6 2.0323 3.3474 -1.5309
7 7 2.7175 3.9998 -0.6173
8 14 1.5945 4.1826 -3.1435
9 1 0.1177 4.2240 -3.2945
10 1 2.1309 5.5673 -3.1453
11 1 2.1863 3.4204 -4.2722
12 6 1.9954 -0.7662 1.1375
13 6 3.4456 -1.1646 0.8566
14 1 4.0379 -0.2697 0.6654
15 8 3.4917 -2.0197 -0.2874
16 6 4.0155 -1.9038 2.0690
17 7 5.4410 -2.1808 1.8480
18 6 6.0229 -2.8919 2.9942
19 1 5.5639 -2.5458 3.9202
20 6 5.8124 -4.4080 2.8363
21 6 7.2163 -5.0456 2.7920
22 6 8.1229 -4.0187 3.5151
23 1 8.0363 -4.1213 4.5967
24 6 9.5792 -4.1749 3.0726
25 8 10.0802 -5.4364 3.5195
26 6 7.5476 -2.6613 3.0406
27 1 -0.3633 0.4301 -0.9333
28 1 -0.3634 -1.0233 0.0942
29 1 -0.3633 0.5933 0.8391
30 1 3.0798 1.3442 0.1082
31 1 1.5612 1.9272 0.8310
32 1 2.9952 4.9146 -0.7808
33 1 1.9549 -0.1535 2.0381
34 1 1.3934 -1.6634 1.2811
35 1 2.9852 -2.8373 -0.1879
36 1 3.8992 -1.2855 2.9591
37 1 3.4797 -2.8431 2.2066
38 1 5.5805 -2.6984 0.9932
39 1 5.2518 -4.7976 3.6860
40 1 5.2777 -4.6160 1.9094
41 1 7.2198 -5.9977 3.3227
42 1 7.5414 -5.1816 1.7605
43 1 9.6357 -4.1261 1.9852
44 1 10.1780 -3.3727 3.5039
45 1 11.0005 -5.6033 3.2742
46 1 7.9260 -2.4121 2.0492
47 1 7.7927 -1.8732 3.7526
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000566235375.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:15:04
Heat of formation + Delta-G solvation = -110.115115 kcal
Electronic energy + Delta-G solvation = -23089.255112 eV
Core-core repulsion = 19692.189996 eV
Total energy + Delta-G solvation = -3397.065116 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 286.204 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-39.34317 -37.98317 -36.75911 -35.53803 -33.87513 -32.44392 -30.24356 -29.43653
-27.87232 -27.19968 -25.25480 -24.12774 -23.21028 -21.51309 -20.42640 -20.21241
-19.92465 -17.56281 -16.74586 -16.33357 -16.00893 -15.68768 -15.40164 -14.87850
-14.64005 -14.42267 -14.15526 -13.81354 -13.57347 -13.50198 -13.22643 -12.79461
-12.46224 -12.25283 -11.91084 -11.67664 -11.49092 -11.34474 -11.25742 -11.10423
-11.07629 -10.90229 -10.82110 -10.77307 -10.67660 -10.59476 -10.33110 -10.23428
-9.71595 -9.57188 -9.09948 -8.37860 -8.34527 -7.16646 -5.97102 -3.97649
3.37682 3.41213 3.44882 3.74570 4.18620 4.34029 4.44076 4.47898
4.72195 4.81374 4.96626 5.01026 5.07002 5.18748 5.29918 5.35594
5.37001 5.38504 5.41528 5.43231 5.54289 5.56514 5.64240 5.74832
5.75713 5.83651 5.86901 5.97130 6.06959 6.10227 6.10833 6.18029
6.37659 6.58774 6.73531 7.07320 7.29528 7.32894 7.35784 7.44942
7.84566 8.09098 8.15476 8.25579 8.60454 9.09218 9.65947 11.13998
Molecular weight = 286.20amu
Principal moments of inertia in cm(-1)
A = 0.024262 B = 0.002769 C = 0.002596
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1153.803381 B =10107.883033 C =10781.945498
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.041 3.959
2 N -0.532 5.532
3 C 0.193 3.807
4 C -0.504 4.504
5 H 0.062 0.938
6 C 0.054 3.946
7 N -0.900 5.900
8 Si 0.898 3.102
9 H -0.278 1.278
10 H -0.288 1.288
11 H -0.276 1.276
12 C 0.027 3.973
13 C 0.115 3.885
14 H 0.112 0.888
15 O -0.542 6.542
16 C 0.030 3.970
17 N -0.677 5.677
18 C 0.084 3.916
19 H 0.078 0.922
20 C -0.156 4.156
21 C -0.109 4.109
22 C -0.095 4.095
23 H 0.080 0.920
24 C 0.083 3.917
25 O -0.575 6.575
26 C -0.105 4.105
27 H 0.072 0.928
28 H 0.041 0.959
29 H 0.011 0.989
30 H 0.032 0.968
31 H -0.012 1.012
32 H 0.261 0.739
33 H 0.032 0.968
34 H 0.058 0.942
35 H 0.358 0.642
36 H 0.077 0.923
37 H 0.028 0.972
38 H 0.349 0.651
39 H 0.062 0.938
40 H 0.065 0.935
41 H 0.065 0.935
42 H 0.065 0.935
43 H 0.047 0.953
44 H 0.046 0.954
45 H 0.377 0.623
46 H 0.078 0.922
47 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.553 -18.002 9.612 22.533
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 N -0.256 5.256
3 C 0.068 3.932
4 C -0.543 4.543
5 H 0.080 0.920
6 C -0.147 4.147
7 N -0.540 5.540
8 Si 0.726 3.274
9 H -0.204 1.204
10 H -0.214 1.214
11 H -0.201 1.201
12 C -0.103 4.103
13 C 0.055 3.945
14 H 0.130 0.870
15 O -0.345 6.345
16 C -0.100 4.100
17 N -0.308 5.308
18 C -0.026 4.026
19 H 0.096 0.904
20 C -0.195 4.195
21 C -0.147 4.147
22 C -0.114 4.114
23 H 0.099 0.901
24 C 0.005 3.995
25 O -0.380 6.380
26 C -0.143 4.143
27 H 0.090 0.910
28 H 0.060 0.940
29 H 0.030 0.970
30 H 0.050 0.950
31 H 0.006 0.994
32 H 0.071 0.929
33 H 0.050 0.950
34 H 0.076 0.924
35 H 0.203 0.797
36 H 0.095 0.905
37 H 0.046 0.954
38 H 0.169 0.831
39 H 0.081 0.919
40 H 0.084 0.916
41 H 0.083 0.917
42 H 0.083 0.917
43 H 0.066 0.934
44 H 0.064 0.936
45 H 0.224 0.776
46 H 0.096 0.904
47 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 9.749 -16.961 9.425 21.716
hybrid contribution -0.695 -0.233 -0.056 0.735
sum 9.054 -17.194 9.369 21.573
Atomic orbital electron populations
1.22189 0.88918 0.98485 1.01146 1.62039 1.06458 1.17896 1.39201
1.19783 0.95560 0.81383 0.96499 1.21113 1.34598 0.96910 1.01674
0.91990 1.24986 0.95344 0.97381 0.96961 1.69946 1.38396 1.11544
1.34087 0.86563 0.78579 0.78289 0.83982 1.20370 1.21398 1.20129
1.22671 0.95970 0.97988 0.93697 1.22005 0.95159 0.93500 0.83823
0.87025 1.86699 1.74058 1.33879 1.39858 1.22700 0.88358 0.98882
1.00049 1.60465 1.14541 1.51120 1.04709 1.22199 0.95080 0.90762
0.94570 0.90396 1.22962 0.97679 0.97029 1.01860 1.22266 0.93922
0.98076 1.00406 1.22130 0.92682 0.95864 1.00720 0.90128 1.22207
0.94537 0.84972 0.97767 1.86475 1.32393 1.37844 1.81327 1.22338
0.94261 0.95452 1.02272 0.90970 0.94013 0.97048 0.94992 0.99393
0.92932 0.94967 0.92390 0.79706 0.90468 0.95418 0.83134 0.91879
0.91649 0.91654 0.91667 0.93425 0.93617 0.77604 0.90378 0.91164
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.81 9.31 60.06 0.56 1.37 16
2 N -0.53 -11.66 4.60 -244.38 -1.12 -12.79 16
3 C 0.19 5.13 4.55 -4.98 -0.02 5.11 16
4 C -0.50 -14.56 8.58 -34.44 -0.30 -14.85 16
5 H 0.06 1.78 7.10 -52.49 -0.37 1.40 16
6 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16
7 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16
8 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16
9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
12 C 0.03 0.46 4.65 -3.82 -0.02 0.45 16
13 C 0.12 1.88 3.28 -26.73 -0.09 1.80 16
14 H 0.11 2.26 6.72 -51.93 -0.35 1.91 16
15 O -0.54 -8.93 12.77 -35.23 -0.45 -9.38 16
16 C 0.03 0.39 5.18 -3.82 -0.02 0.37 16
17 N -0.68 -8.33 6.20 -105.54 -0.65 -8.98 16
18 C 0.08 0.86 3.23 -66.59 -0.21 0.65 16
19 H 0.08 0.81 7.83 -51.93 -0.41 0.40 16
20 C -0.16 -1.42 6.37 -25.62 -0.16 -1.58 16
21 C -0.11 -0.97 6.13 -25.07 -0.15 -1.13 16
22 C -0.10 -0.83 3.18 -88.63 -0.28 -1.11 16
23 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
24 C 0.08 0.65 6.47 37.16 0.24 0.89 16
25 O -0.58 -4.74 13.51 -35.23 -0.48 -5.21 16
26 C -0.11 -0.99 5.98 -25.07 -0.15 -1.14 16
27 H 0.07 1.51 7.01 -51.93 -0.36 1.15 16
28 H 0.04 0.68 7.85 -51.93 -0.41 0.28 16
29 H 0.01 0.22 8.07 -51.93 -0.42 -0.20 16
30 H 0.03 0.91 6.60 -51.93 -0.34 0.57 16
31 H -0.01 -0.33 8.07 -51.93 -0.42 -0.75 16
32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16
33 H 0.03 0.57 8.00 -51.93 -0.42 0.16 16
34 H 0.06 0.86 7.75 -51.93 -0.40 0.46 16
35 H 0.36 4.43 9.04 45.56 0.41 4.84 16
36 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16
37 H 0.03 0.31 8.10 -51.93 -0.42 -0.11 16
38 H 0.35 4.32 7.75 -39.29 -0.30 4.01 16
39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
40 H 0.06 0.61 7.59 -51.92 -0.39 0.22 16
41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
42 H 0.06 0.59 8.01 -51.93 -0.42 0.17 16
43 H 0.05 0.35 8.10 -51.93 -0.42 -0.07 16
44 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16
45 H 0.38 1.43 9.12 45.56 0.42 1.85 16
46 H 0.08 0.79 7.96 -51.93 -0.41 0.37 16
47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
LS Contribution 371.34 15.07 5.60 5.60
Total: -1.00 -32.79 371.34 -9.20 -41.99
By element:
Atomic # 1 Polarization: 12.98 SS G_CDS: -7.11 Total: 5.87 kcal
Atomic # 6 Polarization: -7.00 SS G_CDS: -0.70 Total: -7.71 kcal
Atomic # 7 Polarization: -47.25 SS G_CDS: -1.04 Total: -48.29 kcal
Atomic # 8 Polarization: -13.66 SS G_CDS: -0.93 Total: -14.59 kcal
Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -32.79 -9.20 -41.99 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000566235375.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -68.125 kcal
(2) G-P(sol) polarization free energy of solvation -32.786 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.911 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.990 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.115 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds