Wall clock time and date at job start Tue Mar 31 2020 03:15:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46896 * 1
3 3 C 1.46896 * 111.00725 * 2 1
4 4 C 1.50696 * 109.47333 * 293.95867 * 3 2 1
5 5 H 1.08000 * 119.99684 * 359.97438 * 4 3 2
6 6 C 1.37878 * 120.00099 * 180.27084 * 4 3 2
7 7 N 1.31511 * 120.00169 * 359.72183 * 6 4 3
8 8 Si 1.86808 * 119.99922 * 179.72522 * 6 4 3
9 9 H 1.48504 * 109.47066 * 59.99897 * 8 6 4
10 10 H 1.48495 * 109.46787 * 179.97438 * 8 6 4
11 11 H 1.48496 * 109.46967 * 299.99954 * 8 6 4
12 12 C 1.46904 * 110.99935 * 123.96264 * 2 1 3
13 13 C 1.52996 * 109.47248 * 160.25224 * 12 2 1
14 14 H 1.09004 * 109.47646 * 57.27787 * 13 12 2
15 15 O 1.42902 * 109.47070 * 297.28128 * 13 12 2
16 16 C 1.53002 * 109.47367 * 177.27924 * 13 12 2
17 17 N 1.46897 * 109.47205 * 185.00008 * 16 13 12
18 18 C 1.46903 * 110.99742 * 180.02562 * 17 16 13
19 19 H 1.09000 * 110.01693 * 325.05968 * 18 17 16
20 20 C 1.53872 * 110.03817 * 86.45081 * 18 17 16
21 21 C 1.54259 * 106.59844 * 119.28127 * 20 18 17
22 22 C 1.54893 * 104.19828 * 23.61464 * 21 20 18
23 23 H 1.08994 * 110.75246 * 80.55301 * 22 21 20
24 24 C 1.52996 * 110.75903 * 203.73973 * 22 21 20
25 25 O 1.42901 * 109.47224 * 293.54996 * 24 22 21
26 26 C 1.54269 * 110.03180 * 203.61872 * 18 17 16
27 27 H 1.08997 * 109.47182 * 65.25860 * 1 2 3
28 28 H 1.09001 * 109.47451 * 185.26009 * 1 2 3
29 29 H 1.08998 * 109.46850 * 305.26191 * 1 2 3
30 30 H 1.08996 * 109.47506 * 173.95483 * 3 2 1
31 31 H 1.09004 * 109.46509 * 53.95533 * 3 2 1
32 32 H 0.96995 * 119.99931 * 180.02562 * 7 6 4
33 33 H 1.09002 * 109.46656 * 280.24831 * 12 2 1
34 34 H 1.08995 * 109.47470 * 40.24954 * 12 2 1
35 35 H 0.96696 * 113.99721 * 300.00125 * 15 13 12
36 36 H 1.09001 * 109.46908 * 305.00360 * 16 13 12
37 37 H 1.09007 * 109.46633 * 64.99564 * 16 13 12
38 38 H 1.00900 * 110.99885 * 303.94802 * 17 16 13
39 39 H 1.08998 * 110.03324 * 238.57337 * 20 18 17
40 40 H 1.09007 * 110.02592 * 359.95420 * 20 18 17
41 41 H 1.09000 * 110.48843 * 142.29163 * 21 20 18
42 42 H 1.09006 * 110.49262 * 264.93277 * 21 20 18
43 43 H 1.09004 * 109.46940 * 53.54651 * 24 22 21
44 44 H 1.08998 * 109.47314 * 173.54186 * 24 22 21
45 45 H 0.96699 * 114.00157 * 180.02562 * 25 24 22
46 46 H 1.08997 * 110.48374 * 335.78666 * 26 18 17
47 47 H 1.09003 * 110.48426 * 98.42120 * 26 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9956 1.3713 0.0000
4 6 1.6371 2.0471 -1.2983
5 1 1.0746 1.5113 -2.0487
6 6 2.0323 3.3474 -1.5309
7 7 2.7175 3.9998 -0.6173
8 14 1.5945 4.1826 -3.1435
9 1 0.1177 4.2240 -3.2945
10 1 2.1309 5.5673 -3.1453
11 1 2.1863 3.4204 -4.2722
12 6 1.9954 -0.7662 1.1375
13 6 3.4456 -1.1646 0.8566
14 1 4.0379 -0.2697 0.6654
15 8 3.4917 -2.0197 -0.2874
16 6 4.0155 -1.9038 2.0690
17 7 5.4410 -2.1808 1.8480
18 6 6.0229 -2.8919 2.9942
19 1 5.5639 -2.5458 3.9202
20 6 5.8124 -4.4080 2.8363
21 6 7.2163 -5.0456 2.7920
22 6 8.1229 -4.0187 3.5151
23 1 8.0363 -4.1213 4.5967
24 6 9.5792 -4.1749 3.0726
25 8 10.0802 -5.4364 3.5195
26 6 7.5476 -2.6613 3.0406
27 1 -0.3633 0.4301 -0.9333
28 1 -0.3634 -1.0233 0.0942
29 1 -0.3633 0.5933 0.8391
30 1 3.0798 1.3442 0.1082
31 1 1.5612 1.9272 0.8310
32 1 2.9952 4.9146 -0.7808
33 1 1.9549 -0.1535 2.0381
34 1 1.3934 -1.6634 1.2811
35 1 2.9852 -2.8373 -0.1879
36 1 3.8992 -1.2855 2.9591
37 1 3.4797 -2.8431 2.2066
38 1 5.5805 -2.6984 0.9932
39 1 5.2518 -4.7976 3.6860
40 1 5.2777 -4.6160 1.9094
41 1 7.2198 -5.9977 3.3227
42 1 7.5414 -5.1816 1.7605
43 1 9.6357 -4.1261 1.9852
44 1 10.1780 -3.3727 3.5039
45 1 11.0005 -5.6033 3.2742
46 1 7.9260 -2.4121 2.0492
47 1 7.7927 -1.8732 3.7526
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000566235375.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:15:04
Heat of formation + Delta-G solvation = -138.493388 kcal
Electronic energy + Delta-G solvation = -23090.485687 eV
Core-core repulsion = 19692.189996 eV
Total energy + Delta-G solvation = -3398.295691 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 286.204 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-40.19402 -39.25645 -37.61529 -36.97527 -34.83511 -34.60324 -31.37022 -30.28965
-29.40470 -28.70158 -26.60330 -25.26002 -24.62244 -22.84926 -21.80252 -21.08483
-20.89017 -18.61239 -18.16590 -17.63375 -17.20901 -16.75807 -16.52321 -16.46962
-15.95951 -15.62475 -15.27253 -15.15571 -14.81184 -14.69002 -14.23695 -14.00981
-13.86082 -13.62924 -13.16276 -13.08770 -12.92064 -12.61982 -12.55980 -12.42434
-12.31806 -12.29283 -12.13205 -11.97324 -11.78029 -11.57919 -11.51130 -11.47757
-11.33475 -10.82534 -10.72598 -10.59659 -9.27099 -8.95001 -8.19601 -6.29368
1.40016 1.44169 1.51838 2.40816 2.91172 3.12653 3.28523 3.55534
3.62969 3.70296 3.75847 3.99974 4.09184 4.16815 4.30952 4.34676
4.40193 4.47686 4.49423 4.58327 4.61029 4.62591 4.67228 4.72606
4.75463 4.78251 4.84422 4.93542 5.03410 5.07778 5.11569 5.13218
5.18317 5.29031 5.31424 5.35513 5.46891 5.65334 6.06827 6.17058
6.35154 6.49862 6.65574 6.86314 6.91133 7.05325 7.39941 8.91493
Molecular weight = 286.20amu
Principal moments of inertia in cm(-1)
A = 0.024262 B = 0.002769 C = 0.002596
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1153.803381 B =10107.883033 C =10781.945498
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.042 3.958
2 N -0.543 5.543
3 C 0.210 3.790
4 C -0.524 4.524
5 H 0.061 0.939
6 C -0.001 4.001
7 N -0.935 5.935
8 Si 0.969 3.031
9 H -0.266 1.266
10 H -0.282 1.282
11 H -0.270 1.270
12 C 0.026 3.974
13 C 0.125 3.875
14 H 0.063 0.937
15 O -0.559 6.559
16 C 0.045 3.955
17 N -0.691 5.691
18 C 0.084 3.916
19 H 0.078 0.922
20 C -0.149 4.149
21 C -0.106 4.106
22 C -0.092 4.092
23 H 0.078 0.922
24 C 0.083 3.917
25 O -0.592 6.592
26 C -0.102 4.102
27 H 0.054 0.946
28 H 0.083 0.917
29 H 0.007 0.993
30 H 0.003 0.997
31 H -0.042 1.042
32 H 0.264 0.736
33 H 0.027 0.973
34 H 0.097 0.903
35 H 0.379 0.621
36 H 0.075 0.925
37 H 0.054 0.946
38 H 0.348 0.652
39 H 0.069 0.931
40 H 0.065 0.935
41 H 0.063 0.937
42 H 0.062 0.938
43 H 0.051 0.949
44 H 0.054 0.946
45 H 0.396 0.604
46 H 0.070 0.930
47 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.098 -19.573 9.385 23.536
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 N -0.267 5.267
3 C 0.084 3.916
4 C -0.562 4.562
5 H 0.079 0.921
6 C -0.198 4.198
7 N -0.576 5.576
8 Si 0.794 3.206
9 H -0.191 1.191
10 H -0.207 1.207
11 H -0.195 1.195
12 C -0.103 4.103
13 C 0.065 3.935
14 H 0.081 0.919
15 O -0.365 6.365
16 C -0.085 4.085
17 N -0.323 5.323
18 C -0.026 4.026
19 H 0.096 0.904
20 C -0.188 4.188
21 C -0.144 4.144
22 C -0.111 4.111
23 H 0.096 0.904
24 C 0.005 3.995
25 O -0.401 6.401
26 C -0.141 4.141
27 H 0.072 0.928
28 H 0.102 0.898
29 H 0.025 0.975
30 H 0.021 0.979
31 H -0.024 1.024
32 H 0.073 0.927
33 H 0.045 0.955
34 H 0.115 0.885
35 H 0.226 0.774
36 H 0.093 0.907
37 H 0.072 0.928
38 H 0.168 0.832
39 H 0.088 0.912
40 H 0.084 0.916
41 H 0.082 0.918
42 H 0.081 0.919
43 H 0.069 0.931
44 H 0.072 0.928
45 H 0.245 0.755
46 H 0.088 0.912
47 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 9.294 -18.572 9.208 22.717
hybrid contribution -0.526 0.187 0.045 0.560
sum 8.768 -18.385 9.252 22.371
Atomic orbital electron populations
1.22216 0.87446 1.00877 1.00037 1.61935 1.07905 1.15133 1.41728
1.19384 0.93704 0.83857 0.94689 1.21449 1.34741 0.97573 1.02448
0.92114 1.25938 0.95024 0.98106 1.00782 1.70079 1.39302 1.11960
1.36231 0.85440 0.78880 0.77161 0.79163 1.19056 1.20711 1.19493
1.22802 0.97098 0.98557 0.91804 1.21704 0.93932 0.92548 0.85311
0.91910 1.86648 1.74727 1.34957 1.40131 1.22473 0.88875 0.99405
0.97777 1.60438 1.14368 1.52028 1.05461 1.22236 0.95286 0.91409
0.93630 0.90398 1.22884 0.97844 0.95952 1.02134 1.22232 0.93886
0.98007 1.00263 1.22086 0.93396 0.95138 1.00473 0.90396 1.22183
0.94066 0.85221 0.97985 1.86421 1.34140 1.37912 1.81592 1.22291
0.93891 0.96023 1.01854 0.92754 0.89808 0.97465 0.97890 1.02398
0.92708 0.95512 0.88495 0.77368 0.90679 0.92764 0.83226 0.91173
0.91628 0.91778 0.91879 0.93112 0.92799 0.75495 0.91157 0.91169
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.63 9.31 127.69 1.19 2.82 16
2 N -0.54 -23.81 4.60 -927.08 -4.26 -28.07 16
3 C 0.21 11.61 4.55 85.56 0.39 12.00 16
4 C -0.52 -30.87 8.58 25.60 0.22 -30.65 16
5 H 0.06 3.51 7.10 -2.91 -0.02 3.49 16
6 C 0.00 -0.04 5.46 84.66 0.46 0.42 16
7 N -0.94 -57.99 13.29 21.45 0.28 -57.71 16
8 Si 0.97 45.63 29.54 68.60 2.03 47.65 16
9 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16
10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16
11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16
12 C 0.03 0.90 4.65 86.30 0.40 1.30 16
13 C 0.13 4.09 3.28 30.59 0.10 4.19 16
14 H 0.06 2.69 6.72 -2.39 -0.02 2.67 16
15 O -0.56 -17.87 12.77 -148.98 -1.90 -19.77 16
16 C 0.04 1.09 5.18 86.30 0.45 1.53 16
17 N -0.69 -16.56 6.20 -487.82 -3.03 -19.58 16
18 C 0.08 1.62 3.23 45.64 0.15 1.77 16
19 H 0.08 1.51 7.83 -2.39 -0.02 1.49 16
20 C -0.15 -2.45 6.37 31.32 0.20 -2.25 16
21 C -0.11 -1.75 6.13 31.67 0.19 -1.55 16
22 C -0.09 -1.50 3.18 -9.50 -0.03 -1.53 16
23 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16
24 C 0.08 1.20 6.47 71.98 0.47 1.66 16
25 O -0.59 -8.92 13.51 -148.98 -2.01 -10.93 16
26 C -0.10 -1.86 5.98 31.67 0.19 -1.67 16
27 H 0.05 2.25 7.01 -2.39 -0.02 2.23 16
28 H 0.08 2.49 7.85 -2.39 -0.02 2.47 16
29 H 0.01 0.27 8.07 -2.39 -0.02 0.25 16
30 H 0.00 0.18 6.60 -2.39 -0.02 0.17 16
31 H -0.04 -2.49 8.07 -2.38 -0.02 -2.51 16
32 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16
33 H 0.03 0.95 8.00 -2.39 -0.02 0.93 16
34 H 0.10 2.55 7.75 -2.39 -0.02 2.53 16
35 H 0.38 8.44 9.04 -74.06 -0.67 7.77 16
36 H 0.07 1.87 8.07 -2.39 -0.02 1.85 16
37 H 0.05 1.05 8.10 -2.38 -0.02 1.03 16
38 H 0.35 8.36 7.75 -89.69 -0.70 7.67 16
39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16
40 H 0.07 1.09 7.59 -2.38 -0.02 1.07 16
41 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16
42 H 0.06 1.06 8.01 -2.38 -0.02 1.05 16
43 H 0.05 0.69 8.10 -2.38 -0.02 0.67 16
44 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16
45 H 0.40 2.41 9.12 -74.06 -0.68 1.74 16
46 H 0.07 1.39 7.96 -2.39 -0.02 1.37 16
47 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16
Total: -1.00 -71.93 371.34 -5.60 -77.52
By element:
Atomic # 1 Polarization: 23.92 SS G_CDS: -1.08 Total: 22.84 kcal
Atomic # 6 Polarization: -16.32 SS G_CDS: 4.37 Total: -11.95 kcal
Atomic # 7 Polarization: -98.37 SS G_CDS: -7.00 Total: -105.37 kcal
Atomic # 8 Polarization: -26.78 SS G_CDS: -3.91 Total: -30.70 kcal
Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal
Total: -71.93 -5.60 -77.52 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000566235375.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -60.969 kcal
(2) G-P(sol) polarization free energy of solvation -71.925 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.894 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.524 kcal
(6) G-S(sol) free energy of system = (1) + (5) -138.493 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds