Wall clock time and date at job start Tue Mar 31 2020 03:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 5 5 C 1.46903 * 110.99880 * 85.00797 * 4 2 1 6 6 C 1.52999 * 109.47276 * 180.02562 * 5 4 2 7 7 H 1.09006 * 109.47089 * 59.99482 * 6 5 4 8 8 O 1.42906 * 109.46824 * 299.99600 * 6 5 4 9 9 C 1.52999 * 109.47209 * 179.97438 * 6 5 4 10 10 N 1.46902 * 109.46847 * 184.99815 * 9 6 5 11 11 C 1.46896 * 111.00209 * 66.05103 * 10 9 6 12 12 C 1.46904 * 110.99817 * 190.00193 * 10 9 6 13 13 C 1.50696 * 109.47400 * 169.99951 * 12 10 9 14 14 H 1.08004 * 119.99924 * 359.97438 * 13 12 10 15 15 C 1.37874 * 120.00427 * 180.02562 * 13 12 10 16 16 N 1.31517 * 119.99932 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00002 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47189 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46843 * 119.99853 * 17 15 13 20 20 H 1.48491 * 109.46963 * 239.99375 * 17 15 13 21 21 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 22 22 H 1.08999 * 110.43380 * 58.90089 * 21 2 1 23 23 C 1.54814 * 110.48661 * 296.21861 * 21 2 1 24 24 C 1.54995 * 102.09234 * 220.44321 * 23 21 2 25 25 O 1.44378 * 103.49017 * 37.02269 * 24 23 21 26 26 C 1.43748 * 106.97616 * 319.94003 * 25 24 23 27 27 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 29 29 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 30 30 H 1.00904 * 110.99967 * 208.95457 * 4 2 1 31 31 H 1.09003 * 109.46525 * 299.99167 * 5 4 2 32 32 H 1.08991 * 109.47692 * 59.99249 * 5 4 2 33 33 H 0.96701 * 113.99608 * 299.99929 * 8 6 5 34 34 H 1.08998 * 109.47275 * 305.00054 * 9 6 5 35 35 H 1.09001 * 109.46523 * 65.00167 * 9 6 5 36 36 H 1.08999 * 109.47334 * 59.99622 * 11 10 9 37 37 H 1.08996 * 109.47019 * 180.02562 * 11 10 9 38 38 H 1.09003 * 109.46945 * 299.99417 * 11 10 9 39 39 H 1.08994 * 109.47294 * 290.00193 * 12 10 9 40 40 H 1.09004 * 109.46726 * 50.00325 * 12 10 9 41 41 H 0.96993 * 120.00371 * 180.02562 * 16 15 13 42 42 H 1.09000 * 110.90509 * 338.64221 * 23 21 2 43 43 H 1.09000 * 110.90754 * 102.23908 * 23 21 2 44 44 H 1.08995 * 110.61806 * 278.52134 * 24 23 21 45 45 H 1.09000 * 110.74782 * 155.58875 * 24 23 21 46 46 H 1.08999 * 109.87817 * 267.09039 * 26 25 24 47 47 H 1.09001 * 110.00318 * 146.00845 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5950 -0.5333 -3.5745 7 1 1.9181 -1.3566 -3.8030 8 8 3.8999 -1.0500 -3.3053 9 6 2.6599 0.4197 -4.7697 10 7 3.0368 -0.3313 -5.9747 11 6 1.9873 -1.2889 -6.3480 12 6 3.3401 0.5778 -7.0881 13 6 3.9540 -0.2031 -8.2214 14 1 4.1043 -1.2682 -8.1241 15 6 4.3249 0.4421 -9.3820 16 7 4.1424 1.7392 -9.5003 17 14 5.0852 -0.5261 -10.7869 18 1 5.1803 -1.9584 -10.4065 19 1 4.2358 -0.3914 -11.9976 20 1 6.4432 0.0016 -11.0738 21 6 2.0400 -0.7213 1.2492 22 1 1.6695 -1.7460 1.2749 23 6 1.6166 0.0432 2.5271 24 6 2.8876 -0.0666 3.4073 25 8 3.9673 0.0460 2.4554 26 6 3.5803 -0.7034 1.2913 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 2.9173 -1.1206 -1.0287 31 1 1.0871 0.6162 -2.5525 32 1 2.7588 1.0461 -2.1183 33 1 4.5555 -0.3715 -3.0936 34 1 1.6840 0.8814 -4.9197 35 1 3.4025 1.1940 -4.5770 36 1 1.0596 -0.7522 -6.5466 37 1 2.2922 -1.8316 -7.2428 38 1 1.8316 -1.9939 -5.5314 39 1 2.4207 1.0526 -7.4303 40 1 4.0408 1.3424 -6.7523 41 1 4.4029 2.1931 -10.3169 42 1 1.3895 1.0848 2.3000 43 1 0.7674 -0.4427 3.0077 44 1 2.9216 -1.0311 3.9139 45 1 2.9276 0.7474 4.1311 46 1 3.9610 -1.7222 1.3630 47 1 3.9701 -0.2245 0.3930 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572631990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:51 Heat of formation + Delta-G solvation = -98.320596 kcal Electronic energy + Delta-G solvation = -23294.079737 eV Core-core repulsion = 19897.526070 eV Total energy + Delta-G solvation = -3396.553668 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 286.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.11748 -38.33703 -36.59879 -35.36521 -32.76391 -32.48445 -30.43035 -29.23528 -28.87845 -27.04209 -25.80391 -23.81021 -23.14552 -22.18664 -21.27356 -20.36906 -20.04699 -17.19989 -16.83540 -16.43652 -16.00360 -15.85469 -15.41870 -15.28069 -14.86218 -14.45330 -14.16212 -13.94011 -13.58789 -13.44471 -13.14723 -12.96209 -12.58204 -12.55951 -12.26785 -11.91036 -11.75378 -11.66961 -11.41385 -11.30024 -11.26878 -11.07403 -10.87174 -10.83214 -10.73946 -10.65259 -10.26513 -10.00815 -9.99068 -9.60509 -9.09587 -8.58066 -8.42900 -7.18238 -6.01738 -4.02542 3.32284 3.39530 3.45327 3.57655 3.75624 4.13145 4.38068 4.44571 4.48605 4.66493 4.77848 4.84304 4.87117 5.03413 5.09688 5.16011 5.20552 5.31349 5.32170 5.35893 5.39316 5.44436 5.45980 5.51570 5.61535 5.66719 5.72726 5.75084 5.79655 6.04578 6.07296 6.21691 6.34266 6.42816 6.49554 6.79657 6.86132 7.25416 7.28504 7.34000 7.81842 7.95392 8.11176 8.21938 8.56831 9.05925 9.61725 11.09353 Molecular weight = 286.20amu Principal moments of inertia in cm(-1) A = 0.036265 B = 0.002600 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.900987 B =10765.827568 C =11041.250528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.092 3.908 3 H 0.046 0.954 4 N -0.682 5.682 5 C 0.027 3.973 6 C 0.114 3.886 7 H 0.104 0.896 8 O -0.546 6.546 9 C 0.025 3.975 10 N -0.530 5.530 11 C 0.036 3.964 12 C 0.192 3.808 13 C -0.504 4.504 14 H 0.065 0.935 15 C 0.053 3.947 16 N -0.901 5.901 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.124 4.124 22 H 0.093 0.907 23 C -0.147 4.147 24 C 0.045 3.955 25 O -0.378 6.378 26 C 0.046 3.954 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.347 0.653 31 H 0.078 0.922 32 H 0.032 0.968 33 H 0.366 0.634 34 H 0.028 0.972 35 H 0.068 0.932 36 H 0.008 0.992 37 H 0.074 0.926 38 H 0.048 0.952 39 H -0.011 1.011 40 H 0.028 0.972 41 H 0.260 0.740 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.060 0.940 45 H 0.092 0.908 46 H 0.063 0.937 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.881 -2.688 24.679 25.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.018 4.018 3 H 0.063 0.937 4 N -0.315 5.315 5 C -0.103 4.103 6 C 0.054 3.946 7 H 0.122 0.878 8 O -0.350 6.350 9 C -0.105 4.105 10 N -0.254 5.254 11 C -0.113 4.113 12 C 0.067 3.933 13 C -0.542 4.542 14 H 0.083 0.917 15 C -0.148 4.148 16 N -0.541 5.541 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.212 1.212 20 H -0.210 1.210 21 C -0.143 4.143 22 H 0.111 0.889 23 C -0.185 4.185 24 C -0.032 4.032 25 O -0.297 6.297 26 C -0.031 4.031 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.168 0.832 31 H 0.097 0.903 32 H 0.050 0.950 33 H 0.212 0.788 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.027 0.973 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.007 0.993 40 H 0.046 0.954 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.110 0.890 46 H 0.082 0.918 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.139 -3.515 24.377 25.643 hybrid contribution 0.396 1.166 -0.812 1.475 sum -6.742 -2.349 23.565 24.623 Atomic orbital electron populations 1.21805 0.94266 1.02457 1.01265 1.21558 0.96194 0.95610 0.88438 0.93651 1.60455 1.34279 1.32963 1.03827 1.22739 1.01481 0.94085 0.91981 1.22002 0.84980 0.96867 0.90752 0.87815 1.86610 1.19286 1.37103 1.91990 1.22710 0.99154 0.95874 0.92719 1.62031 1.39823 1.18614 1.04917 1.22261 0.92139 0.96065 1.00812 1.19749 0.95132 0.91169 0.87254 1.21211 1.39555 0.95166 0.98299 0.91727 1.25003 0.96131 0.94940 0.98695 1.69969 1.48480 1.08215 1.27403 0.86434 0.78831 0.80274 0.81861 1.19601 1.21152 1.21013 1.22755 0.95397 1.01179 0.94993 0.88890 1.23186 0.98590 1.01574 0.95181 1.23569 0.85502 1.01683 0.92435 1.88891 1.41184 1.72968 1.26672 1.23291 0.93830 0.96631 0.89307 0.91888 0.92646 0.92575 0.83212 0.90316 0.94985 0.78795 0.95359 0.91332 0.97324 0.90686 0.93375 0.99308 0.95418 0.93025 0.90255 0.89962 0.92156 0.88996 0.91839 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.23 37.16 0.34 -0.81 16 2 C 0.09 0.81 1.91 -67.71 -0.13 0.68 16 3 H 0.05 0.43 7.79 -51.93 -0.40 0.03 16 4 N -0.68 -7.11 6.28 -106.72 -0.67 -7.78 16 5 C 0.03 0.31 5.19 -3.82 -0.02 0.29 16 6 C 0.11 1.63 3.19 -26.73 -0.09 1.55 16 7 H 0.10 1.61 6.34 -51.93 -0.33 1.29 16 8 O -0.55 -8.21 12.62 -35.23 -0.44 -8.65 16 9 C 0.03 0.44 4.60 -3.82 -0.02 0.42 16 10 N -0.53 -11.60 4.70 -244.37 -1.15 -12.75 16 11 C 0.04 0.72 9.14 60.06 0.55 1.27 16 12 C 0.19 5.08 4.72 -4.98 -0.02 5.05 16 13 C -0.50 -14.40 8.46 -34.44 -0.29 -14.69 16 14 H 0.06 1.85 7.12 -52.48 -0.37 1.47 16 15 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 16 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 17 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.12 -0.95 2.74 -89.09 -0.24 -1.19 16 22 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 23 C -0.15 -0.94 5.75 -24.72 -0.14 -1.08 16 24 C 0.04 0.32 7.72 38.21 0.29 0.61 16 25 O -0.38 -3.91 11.52 -35.23 -0.41 -4.32 16 26 C 0.05 0.41 6.60 37.73 0.25 0.66 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.37 7.31 -51.93 -0.38 0.00 16 29 H 0.06 0.50 7.45 -51.93 -0.39 0.11 16 30 H 0.35 3.64 6.16 -39.29 -0.24 3.39 16 31 H 0.08 0.90 7.44 -51.93 -0.39 0.51 16 32 H 0.03 0.35 8.05 -51.93 -0.42 -0.07 16 33 H 0.37 4.46 9.05 45.56 0.41 4.87 16 34 H 0.03 0.49 8.12 -51.93 -0.42 0.06 16 35 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 36 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 37 H 0.07 1.62 6.76 -51.93 -0.35 1.27 16 38 H 0.05 0.85 6.37 -51.93 -0.33 0.52 16 39 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 40 H 0.03 0.78 7.93 -51.93 -0.41 0.36 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.08 0.52 7.75 -51.93 -0.40 0.12 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.08 0.75 6.84 -51.93 -0.36 0.40 16 LS Contribution 365.82 15.07 5.51 5.51 Total: -1.00 -31.82 365.82 -8.77 -40.59 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.71 Total: 2.60 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 0.39 Total: -5.81 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -1.08 Total: -46.83 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.85 Total: -12.97 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.82 -8.77 -40.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572631990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.736 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds