Wall clock time and date at job start Tue Mar 31 2020 03:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 5 5 C 1.46903 * 110.99880 * 85.00797 * 4 2 1 6 6 C 1.52999 * 109.47276 * 180.02562 * 5 4 2 7 7 H 1.09006 * 109.47089 * 59.99482 * 6 5 4 8 8 O 1.42906 * 109.46824 * 299.99600 * 6 5 4 9 9 C 1.52999 * 109.47209 * 179.97438 * 6 5 4 10 10 N 1.46902 * 109.46847 * 184.99815 * 9 6 5 11 11 C 1.46896 * 111.00209 * 66.05103 * 10 9 6 12 12 C 1.46904 * 110.99817 * 190.00193 * 10 9 6 13 13 C 1.50696 * 109.47400 * 169.99951 * 12 10 9 14 14 H 1.08004 * 119.99924 * 359.97438 * 13 12 10 15 15 C 1.37874 * 120.00427 * 180.02562 * 13 12 10 16 16 N 1.31517 * 119.99932 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00002 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47189 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46843 * 119.99853 * 17 15 13 20 20 H 1.48491 * 109.46963 * 239.99375 * 17 15 13 21 21 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 22 22 H 1.08999 * 110.43380 * 58.90089 * 21 2 1 23 23 C 1.54814 * 110.48661 * 296.21861 * 21 2 1 24 24 C 1.54995 * 102.09234 * 220.44321 * 23 21 2 25 25 O 1.44378 * 103.49017 * 37.02269 * 24 23 21 26 26 C 1.43748 * 106.97616 * 319.94003 * 25 24 23 27 27 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 29 29 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 30 30 H 1.00904 * 110.99967 * 208.95457 * 4 2 1 31 31 H 1.09003 * 109.46525 * 299.99167 * 5 4 2 32 32 H 1.08991 * 109.47692 * 59.99249 * 5 4 2 33 33 H 0.96701 * 113.99608 * 299.99929 * 8 6 5 34 34 H 1.08998 * 109.47275 * 305.00054 * 9 6 5 35 35 H 1.09001 * 109.46523 * 65.00167 * 9 6 5 36 36 H 1.08999 * 109.47334 * 59.99622 * 11 10 9 37 37 H 1.08996 * 109.47019 * 180.02562 * 11 10 9 38 38 H 1.09003 * 109.46945 * 299.99417 * 11 10 9 39 39 H 1.08994 * 109.47294 * 290.00193 * 12 10 9 40 40 H 1.09004 * 109.46726 * 50.00325 * 12 10 9 41 41 H 0.96993 * 120.00371 * 180.02562 * 16 15 13 42 42 H 1.09000 * 110.90509 * 338.64221 * 23 21 2 43 43 H 1.09000 * 110.90754 * 102.23908 * 23 21 2 44 44 H 1.08995 * 110.61806 * 278.52134 * 24 23 21 45 45 H 1.09000 * 110.74782 * 155.58875 * 24 23 21 46 46 H 1.08999 * 109.87817 * 267.09039 * 26 25 24 47 47 H 1.09001 * 110.00318 * 146.00845 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5950 -0.5333 -3.5745 7 1 1.9181 -1.3566 -3.8030 8 8 3.8999 -1.0500 -3.3053 9 6 2.6599 0.4197 -4.7697 10 7 3.0368 -0.3313 -5.9747 11 6 1.9873 -1.2889 -6.3480 12 6 3.3401 0.5778 -7.0881 13 6 3.9540 -0.2031 -8.2214 14 1 4.1043 -1.2682 -8.1241 15 6 4.3249 0.4421 -9.3820 16 7 4.1424 1.7392 -9.5003 17 14 5.0852 -0.5261 -10.7869 18 1 5.1803 -1.9584 -10.4065 19 1 4.2358 -0.3914 -11.9976 20 1 6.4432 0.0016 -11.0738 21 6 2.0400 -0.7213 1.2492 22 1 1.6695 -1.7460 1.2749 23 6 1.6166 0.0432 2.5271 24 6 2.8876 -0.0666 3.4073 25 8 3.9673 0.0460 2.4554 26 6 3.5803 -0.7034 1.2913 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 2.9173 -1.1206 -1.0287 31 1 1.0871 0.6162 -2.5525 32 1 2.7588 1.0461 -2.1183 33 1 4.5555 -0.3715 -3.0936 34 1 1.6840 0.8814 -4.9197 35 1 3.4025 1.1940 -4.5770 36 1 1.0596 -0.7522 -6.5466 37 1 2.2922 -1.8316 -7.2428 38 1 1.8316 -1.9939 -5.5314 39 1 2.4207 1.0526 -7.4303 40 1 4.0408 1.3424 -6.7523 41 1 4.4029 2.1931 -10.3169 42 1 1.3895 1.0848 2.3000 43 1 0.7674 -0.4427 3.0077 44 1 2.9216 -1.0311 3.9139 45 1 2.9276 0.7474 4.1311 46 1 3.9610 -1.7222 1.3630 47 1 3.9701 -0.2245 0.3930 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572631990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:51 Heat of formation + Delta-G solvation = -124.196053 kcal Electronic energy + Delta-G solvation = -23295.201781 eV Core-core repulsion = 19897.526070 eV Total energy + Delta-G solvation = -3397.675712 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 286.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.78071 -39.56272 -37.74419 -36.69001 -34.63263 -33.54082 -31.36591 -30.07729 -29.86741 -28.88417 -27.27795 -25.29589 -23.84559 -23.12398 -22.41513 -21.84975 -20.90708 -18.58349 -17.97233 -17.50596 -17.18254 -16.84089 -16.69509 -16.36587 -16.02043 -15.91707 -15.53184 -15.01392 -14.98754 -14.57203 -14.16357 -13.85474 -13.74990 -13.54401 -13.48697 -13.24508 -12.97283 -12.78969 -12.60426 -12.57432 -12.41409 -12.36443 -12.27222 -12.05230 -11.97844 -11.88667 -11.60051 -11.47087 -11.38119 -10.71630 -10.64478 -10.63491 -9.40794 -8.97358 -8.21899 -6.31698 1.40201 1.40926 1.54988 2.39535 2.86085 2.99555 3.10589 3.37465 3.52942 3.66659 3.76432 3.88100 3.99963 4.10257 4.23621 4.24839 4.32991 4.33962 4.42635 4.46331 4.54567 4.63002 4.66503 4.72484 4.75136 4.77402 4.84403 4.85351 4.96806 5.01911 5.03723 5.06741 5.15509 5.16697 5.20061 5.31185 5.40310 5.64154 5.88435 6.02315 6.06879 6.31139 6.43180 6.62325 6.84538 6.92725 7.38123 8.89409 Molecular weight = 286.20amu Principal moments of inertia in cm(-1) A = 0.036265 B = 0.002600 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.900987 B =10765.827568 C =11041.250528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.094 3.906 3 H 0.039 0.961 4 N -0.685 5.685 5 C 0.039 3.961 6 C 0.129 3.871 7 H 0.096 0.904 8 O -0.560 6.560 9 C 0.025 3.975 10 N -0.540 5.540 11 C 0.040 3.960 12 C 0.207 3.793 13 C -0.522 4.522 14 H 0.061 0.939 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.970 3.030 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.118 4.118 22 H 0.097 0.903 23 C -0.141 4.141 24 C 0.038 3.962 25 O -0.406 6.406 26 C 0.044 3.956 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.347 0.653 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.378 0.622 34 H 0.033 0.967 35 H 0.066 0.934 36 H 0.011 0.989 37 H 0.055 0.945 38 H 0.076 0.924 39 H -0.039 1.039 40 H 0.003 0.997 41 H 0.265 0.735 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.070 0.930 45 H 0.103 0.897 46 H 0.066 0.934 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.337 -3.641 25.814 27.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.016 4.016 3 H 0.057 0.943 4 N -0.319 5.319 5 C -0.091 4.091 6 C 0.069 3.931 7 H 0.114 0.886 8 O -0.365 6.365 9 C -0.105 4.105 10 N -0.264 5.264 11 C -0.108 4.108 12 C 0.081 3.919 13 C -0.560 4.560 14 H 0.079 0.921 15 C -0.198 4.198 16 N -0.576 5.576 17 Si 0.794 3.206 18 H -0.189 1.189 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.137 4.137 22 H 0.115 0.885 23 C -0.179 4.179 24 C -0.038 4.038 25 O -0.326 6.326 26 C -0.033 4.033 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.167 0.833 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.226 0.774 34 H 0.051 0.949 35 H 0.085 0.915 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.095 0.905 39 H -0.021 1.021 40 H 0.022 0.978 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.120 0.880 44 H 0.089 0.911 45 H 0.121 0.879 46 H 0.085 0.915 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.603 -4.472 25.543 27.023 hybrid contribution 0.530 1.484 -1.086 1.914 sum -7.073 -2.988 24.457 25.634 Atomic orbital electron populations 1.21790 0.93592 1.02421 1.01701 1.21581 0.96597 0.95196 0.88180 0.94313 1.60462 1.34322 1.32907 1.04182 1.22530 1.01563 0.93885 0.91160 1.21790 0.84862 0.95854 0.90584 0.88618 1.86572 1.19865 1.38110 1.91973 1.22826 0.99164 0.96427 0.92039 1.61944 1.41383 1.18379 1.04709 1.22234 0.91536 0.95963 1.01109 1.19402 0.93072 0.91039 0.88418 1.21493 1.39956 0.95166 0.99399 0.92094 1.25924 0.96430 0.95946 1.01463 1.70085 1.49281 1.09850 1.28383 0.85322 0.78005 0.78925 0.78301 1.18856 1.20297 1.20295 1.22696 0.94512 1.01449 0.95032 0.88469 1.23180 0.98893 1.01529 0.94318 1.23779 0.84945 1.02772 0.92280 1.88859 1.42784 1.73367 1.27592 1.23319 0.94683 0.96517 0.88769 0.92101 0.90978 0.93428 0.83250 0.89962 0.94414 0.77399 0.94923 0.91517 0.97011 0.92623 0.90520 1.02120 0.97841 0.92663 0.90344 0.88021 0.91142 0.87901 0.91537 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.23 71.98 0.66 -1.31 16 2 C 0.09 1.49 1.91 44.92 0.09 1.58 16 3 H 0.04 0.68 7.79 -2.39 -0.02 0.67 16 4 N -0.68 -13.28 6.28 -491.56 -3.09 -16.36 16 5 C 0.04 0.84 5.19 86.30 0.45 1.28 16 6 C 0.13 3.56 3.19 30.59 0.10 3.65 16 7 H 0.10 2.83 6.34 -2.38 -0.02 2.81 16 8 O -0.56 -16.22 12.62 -148.98 -1.88 -18.10 16 9 C 0.02 0.85 4.60 86.30 0.40 1.25 16 10 N -0.54 -23.83 4.70 -927.06 -4.36 -28.18 16 11 C 0.04 1.59 9.14 127.69 1.17 2.76 16 12 C 0.21 11.27 4.72 85.55 0.40 11.67 16 13 C -0.52 -30.29 8.46 25.60 0.22 -30.08 16 14 H 0.06 3.51 7.12 -2.91 -0.02 3.49 16 15 C 0.00 0.01 5.46 84.65 0.46 0.47 16 16 N -0.94 -56.94 13.29 21.45 0.28 -56.65 16 17 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 18 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 C -0.12 -1.59 2.74 -9.80 -0.03 -1.62 16 22 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 23 C -0.14 -1.47 5.75 31.90 0.18 -1.29 16 24 C 0.04 0.47 7.72 72.66 0.56 1.03 16 25 O -0.41 -8.03 11.52 -148.98 -1.72 -9.75 16 26 C 0.04 0.73 6.60 72.35 0.48 1.21 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 0.79 7.31 -2.39 -0.02 0.77 16 29 H 0.05 0.77 7.45 -2.39 -0.02 0.75 16 30 H 0.35 6.82 6.16 -89.69 -0.55 6.27 16 31 H 0.08 1.74 7.44 -2.39 -0.02 1.73 16 32 H 0.04 0.78 8.05 -2.39 -0.02 0.76 16 33 H 0.38 8.87 9.05 -74.06 -0.67 8.20 16 34 H 0.03 1.11 8.12 -2.39 -0.02 1.09 16 35 H 0.07 2.31 7.93 -2.39 -0.02 2.29 16 36 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.05 2.41 6.76 -2.39 -0.02 2.40 16 38 H 0.08 2.60 6.37 -2.39 -0.02 2.59 16 39 H -0.04 -2.28 8.12 -2.39 -0.02 -2.30 16 40 H 0.00 0.20 7.93 -2.38 -0.02 0.18 16 41 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 42 H 0.08 0.85 7.75 -2.39 -0.02 0.83 16 43 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 47 H 0.07 1.31 6.84 -2.39 -0.02 1.29 16 Total: -1.00 -68.21 365.82 -3.87 -72.08 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -0.28 Total: 19.30 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 5.14 Total: -9.39 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -7.16 Total: -101.20 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -3.60 Total: -27.85 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -68.21 -3.87 -72.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572631990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.116 kcal (2) G-P(sol) polarization free energy of solvation -68.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds