Wall clock time and date at job start Tue Mar 31 2020 03:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46906 * 111.00136 * 2 1 4 4 C 1.50693 * 109.47155 * 66.04479 * 3 2 1 5 5 H 1.08002 * 120.00119 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00394 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00401 * 180.02562 * 6 4 3 8 8 Si 1.86807 * 119.99435 * 359.97438 * 6 4 3 9 9 H 1.48494 * 109.46954 * 90.00203 * 8 6 4 10 10 H 1.48501 * 109.46843 * 210.00277 * 8 6 4 11 11 H 1.48504 * 109.47114 * 330.00314 * 8 6 4 12 12 C 1.46901 * 111.00243 * 236.04528 * 2 1 3 13 13 C 1.53000 * 109.46769 * 293.95721 * 12 2 1 14 14 H 1.08992 * 109.47399 * 59.99697 * 13 12 2 15 15 O 1.42900 * 109.47041 * 299.99294 * 13 12 2 16 16 C 1.53001 * 109.46886 * 180.02562 * 13 12 2 17 17 N 1.46896 * 109.47098 * 185.00074 * 16 13 12 18 18 C 1.46903 * 111.00046 * 179.97438 * 17 16 13 19 19 C 1.53006 * 109.47219 * 179.97438 * 18 17 16 20 20 H 1.09006 * 109.47239 * 305.00212 * 19 18 17 21 21 C 1.52999 * 109.46969 * 64.99865 * 19 18 17 22 22 O 1.42895 * 109.47067 * 185.00169 * 21 19 18 23 23 C 1.52993 * 109.47351 * 185.00073 * 19 18 17 24 24 C 1.53004 * 117.50084 * 128.74706 * 23 19 18 25 25 C 1.53005 * 117.50061 * 60.08503 * 23 19 18 26 26 H 1.08999 * 109.47439 * 183.95618 * 1 2 3 27 27 H 1.08997 * 109.47257 * 303.95746 * 1 2 3 28 28 H 1.09006 * 109.46808 * 63.95302 * 1 2 3 29 29 H 1.09000 * 109.47257 * 186.04513 * 3 2 1 30 30 H 1.09006 * 109.46871 * 306.04551 * 3 2 1 31 31 H 0.97005 * 119.99916 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.47401 * 173.95428 * 12 2 1 33 33 H 1.09001 * 109.46874 * 53.95440 * 12 2 1 34 34 H 0.96698 * 114.00516 * 300.00983 * 15 13 12 35 35 H 1.09008 * 109.46864 * 304.99696 * 16 13 12 36 36 H 1.09000 * 109.47679 * 64.99728 * 16 13 12 37 37 H 1.00905 * 111.00162 * 56.04172 * 17 16 13 38 38 H 1.08991 * 109.47170 * 299.99552 * 18 17 16 39 39 H 1.09001 * 109.46877 * 59.99944 * 18 17 16 40 40 H 1.08999 * 109.47201 * 304.99970 * 21 19 18 41 41 H 1.09002 * 109.47077 * 65.00395 * 21 19 18 42 42 H 0.96701 * 114.00423 * 180.02562 * 22 21 19 43 43 H 1.09003 * 115.55202 * 274.42043 * 23 19 18 44 44 H 1.09000 * 117.49735 * 0.02562 * 24 23 19 45 45 H 1.08993 * 117.49500 * 145.02356 * 24 23 19 46 46 H 1.08995 * 117.49883 * 214.98279 * 25 23 19 47 47 H 1.09004 * 117.49734 * 0.02562 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5113 2.0487 6 6 2.0268 3.3495 1.5285 7 7 1.7143 3.9390 2.6617 8 14 3.0000 4.2762 0.2309 9 1 2.0634 4.9797 -0.6817 10 1 3.8864 5.2678 0.8913 11 1 3.8239 3.3174 -0.5484 12 6 1.9954 -0.7660 -1.1376 13 6 1.6314 -2.2426 -0.9703 14 1 0.5472 -2.3475 -0.9322 15 8 2.2008 -2.7391 0.2427 16 6 2.1803 -3.0405 -2.1547 17 7 1.7298 -4.4352 -2.0564 18 6 2.2384 -5.2332 -3.1801 19 6 1.7499 -6.6767 -3.0429 20 1 2.0387 -7.0668 -2.0669 21 6 0.2262 -6.7143 -3.1766 22 8 -0.2406 -8.0427 -2.9331 23 6 2.3797 -7.5348 -4.1418 24 6 3.0765 -8.8287 -3.7158 25 6 3.9065 -7.6282 -4.1776 26 1 -0.3634 -1.0252 0.0709 27 1 -0.3633 0.5740 0.8524 28 1 -0.3633 0.4513 -0.9234 29 1 3.0797 1.3444 -0.1082 30 1 1.5611 1.9274 -0.8310 31 1 1.9889 4.8552 2.8237 32 1 3.0797 -0.6611 -1.1756 33 1 1.5611 -0.3872 -2.0628 34 1 3.1652 -2.6771 0.2788 35 1 1.8160 -2.6058 -3.0857 36 1 3.2697 -3.0087 -2.1407 37 1 0.7235 -4.4873 -2.0026 38 1 1.8742 -4.8137 -4.1178 39 1 3.3282 -5.2166 -3.1735 40 1 -0.2191 -6.0339 -2.4508 41 1 -0.0578 -6.4083 -4.1835 42 1 -1.2002 -8.1412 -3.0016 43 1 1.8529 -7.5377 -5.0961 44 1 3.0858 -9.0687 -2.6525 45 1 3.0083 -9.6824 -4.3899 46 1 4.3840 -7.6928 -5.1552 47 1 4.4622 -7.0785 -3.4179 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578748891.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:27 Heat of formation + Delta-G solvation = -71.564216 kcal Electronic energy + Delta-G solvation = -22859.258249 eV Core-core repulsion = 19463.864825 eV Total energy + Delta-G solvation = -3395.393424 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 286.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.18317 -38.17966 -36.53046 -36.07953 -35.02067 -32.46694 -31.64994 -29.45861 -27.67856 -26.30713 -25.03831 -23.53563 -22.72162 -22.12490 -21.27180 -20.13304 -20.04459 -17.85603 -16.93892 -16.50496 -16.03441 -15.95778 -15.54970 -15.18257 -14.85379 -14.53266 -14.20683 -14.00200 -13.87840 -13.78613 -13.30070 -12.90716 -12.61496 -12.39321 -12.21109 -11.92992 -11.79529 -11.62584 -11.44712 -11.33712 -11.20008 -10.99459 -10.73436 -10.69635 -10.49536 -10.32636 -10.21330 -10.17674 -9.90692 -9.51380 -9.21421 -8.59254 -8.57816 -7.34885 -6.04631 -4.01747 3.26695 3.34535 3.35839 3.47114 3.81613 3.88766 4.33393 4.41319 4.55837 4.60744 4.69918 4.77996 4.82438 4.91580 5.05657 5.09453 5.14334 5.24960 5.28730 5.31921 5.34909 5.38196 5.45908 5.54079 5.54272 5.61052 5.67133 5.78231 5.87664 5.92734 6.07494 6.10058 6.20023 6.29785 6.68663 6.76542 6.82945 6.98405 7.12582 7.31148 7.59165 7.89504 7.99898 8.14250 8.66663 9.05266 9.56833 11.08562 Molecular weight = 286.20amu Principal moments of inertia in cm(-1) A = 0.033648 B = 0.002523 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.937728 B =11096.795129 C =11506.932291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.519 5.519 3 C 0.162 3.838 4 C -0.507 4.507 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.900 5.900 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.268 1.268 12 C 0.021 3.979 13 C 0.118 3.882 14 H 0.092 0.908 15 O -0.534 6.534 16 C 0.027 3.973 17 N -0.680 5.680 18 C 0.067 3.933 19 C -0.056 4.056 20 H 0.090 0.910 21 C 0.081 3.919 22 O -0.568 6.568 23 C -0.140 4.140 24 C -0.169 4.169 25 C -0.185 4.185 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.008 0.992 29 H 0.027 0.973 30 H -0.019 1.019 31 H 0.263 0.737 32 H 0.070 0.930 33 H 0.027 0.973 34 H 0.369 0.631 35 H 0.035 0.965 36 H 0.076 0.924 37 H 0.338 0.662 38 H 0.029 0.971 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.041 0.959 42 H 0.377 0.623 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.217 -22.334 -16.753 27.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.242 5.242 3 C 0.036 3.964 4 C -0.546 4.546 5 H 0.100 0.900 6 C -0.134 4.134 7 N -0.539 5.539 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.193 1.193 12 C -0.109 4.109 13 C 0.057 3.943 14 H 0.110 0.890 15 O -0.337 6.337 16 C -0.103 4.103 17 N -0.312 5.312 18 C -0.062 4.062 19 C -0.075 4.075 20 H 0.108 0.892 21 C 0.003 3.997 22 O -0.372 6.372 23 C -0.158 4.158 24 C -0.206 4.206 25 C -0.222 4.222 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.026 0.974 29 H 0.045 0.955 30 H -0.001 1.001 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.215 0.785 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.158 0.842 38 H 0.047 0.953 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.223 0.777 43 H 0.118 0.882 44 H 0.113 0.887 45 H 0.108 0.892 46 H 0.110 0.890 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.490 -22.774 -15.561 27.587 hybrid contribution -0.338 1.715 -2.537 3.081 sum 0.152 -21.059 -18.098 27.768 Atomic orbital electron populations 1.22289 0.88358 1.00028 1.00643 1.61847 1.07294 1.15947 1.39129 1.20209 0.95089 0.84142 0.97003 1.21041 1.35497 0.97120 1.00914 0.90021 1.24912 0.95816 0.97377 0.95329 1.69893 1.46921 1.13226 1.23865 0.86857 0.80619 0.80028 0.82160 1.20441 1.21119 1.19304 1.22790 1.00539 0.94356 0.93217 1.21830 0.98212 0.90479 0.83764 0.89048 1.86605 1.24937 1.84874 1.37312 1.22741 1.01255 0.88283 0.98070 1.60423 1.16336 1.10344 1.44085 1.21932 1.00849 0.91741 0.91665 1.20751 0.93068 0.94420 0.99230 0.89208 1.22223 0.94627 0.84062 0.98750 1.86512 1.27157 1.29220 1.94356 1.22137 0.94114 0.99885 0.99684 1.22935 1.03899 0.91815 1.01936 1.23008 0.93526 1.02809 1.02865 0.93159 0.90067 0.97381 0.95535 1.00108 0.92673 0.91121 0.95487 0.78469 0.94688 0.90528 0.84249 0.95286 0.90196 0.93284 0.94050 0.77663 0.88241 0.88714 0.89152 0.89009 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 9.14 60.06 0.55 1.23 16 2 N -0.52 -10.88 4.62 -244.37 -1.13 -12.01 16 3 C 0.16 3.95 3.79 -4.98 -0.02 3.93 16 4 C -0.51 -14.57 9.01 -34.44 -0.31 -14.88 16 5 H 0.08 2.57 7.37 -52.49 -0.39 2.18 16 6 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 7 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 8 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 12 C 0.02 0.34 4.62 -3.82 -0.02 0.32 16 13 C 0.12 1.60 3.02 -26.73 -0.08 1.52 16 14 H 0.09 1.28 6.55 -51.93 -0.34 0.94 16 15 O -0.53 -8.34 13.15 -35.23 -0.46 -8.81 16 16 C 0.03 0.28 5.32 -3.83 -0.02 0.26 16 17 N -0.68 -6.86 6.45 -113.78 -0.73 -7.59 16 18 C 0.07 0.58 5.06 -3.82 -0.02 0.56 16 19 C -0.06 -0.48 2.45 -90.62 -0.22 -0.70 16 20 H 0.09 0.94 7.90 -51.93 -0.41 0.53 16 21 C 0.08 0.63 6.29 37.16 0.23 0.86 16 22 O -0.57 -4.72 13.42 -35.23 -0.47 -5.20 16 23 C -0.14 -1.12 4.93 -90.62 -0.45 -1.56 16 24 C -0.17 -1.35 10.18 -26.69 -0.27 -1.62 16 25 C -0.19 -1.37 9.68 -26.69 -0.26 -1.63 16 26 H 0.05 0.85 6.47 -51.93 -0.34 0.52 16 27 H 0.08 1.77 6.76 -51.93 -0.35 1.42 16 28 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.03 0.65 6.99 -51.93 -0.36 0.29 16 30 H -0.02 -0.46 7.55 -51.93 -0.39 -0.85 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.07 1.11 7.93 -51.93 -0.41 0.69 16 33 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 34 H 0.37 4.81 9.04 45.56 0.41 5.22 16 35 H 0.03 0.35 8.14 -51.92 -0.42 -0.07 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.34 3.25 6.89 -39.29 -0.27 2.98 16 38 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 39 H 0.08 0.70 7.13 -51.93 -0.37 0.33 16 40 H 0.05 0.37 6.47 -51.93 -0.34 0.03 16 41 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.38 1.53 9.12 45.56 0.42 1.95 16 43 H 0.10 0.77 8.11 -51.93 -0.42 0.35 16 44 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.10 0.72 7.59 -51.93 -0.39 0.33 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -33.16 372.12 -8.99 -42.15 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.92 Total: 5.79 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -0.98 Total: -9.84 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -1.09 Total: -46.57 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.94 Total: -14.00 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.16 -8.99 -42.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578748891.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.418 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds