Wall clock time and date at job start Tue Mar 31 2020 03:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00261 * 2 1 4 4 C 1.50697 * 109.47151 * 293.95384 * 3 2 1 5 5 H 1.08004 * 119.99975 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00011 * 179.97438 * 4 3 2 7 7 N 1.31508 * 119.99586 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99854 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47349 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46780 * 120.00419 * 8 6 4 11 11 H 1.48499 * 109.47209 * 240.00251 * 8 6 4 12 12 C 1.46895 * 110.99869 * 123.96023 * 2 1 3 13 13 C 1.52996 * 109.47586 * 66.04172 * 12 2 1 14 14 H 1.08997 * 109.47122 * 304.99772 * 13 12 2 15 15 O 1.42901 * 109.47358 * 65.00174 * 13 12 2 16 16 C 1.53007 * 109.47066 * 185.00011 * 13 12 2 17 17 N 1.46898 * 109.46764 * 179.97438 * 16 13 12 18 18 C 1.46906 * 110.99888 * 179.97438 * 17 16 13 19 19 C 1.52999 * 109.46897 * 179.97438 * 18 17 16 20 20 C 1.53006 * 109.46997 * 180.02562 * 19 18 17 21 21 O 1.42899 * 112.84645 * 53.80162 * 20 19 18 22 22 C 1.53786 * 113.61229 * 282.49954 * 20 19 18 23 23 C 1.53778 * 87.07991 * 220.01737 * 22 20 19 24 24 C 1.53781 * 113.61629 * 185.00212 * 20 19 18 25 25 H 1.09005 * 109.46831 * 296.04804 * 1 2 3 26 26 H 1.09002 * 109.47226 * 56.03957 * 1 2 3 27 27 H 1.08997 * 109.47660 * 176.04914 * 1 2 3 28 28 H 1.08996 * 109.46887 * 53.95834 * 3 2 1 29 29 H 1.08998 * 109.47130 * 173.95599 * 3 2 1 30 30 H 0.97010 * 119.99520 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47156 * 306.03907 * 12 2 1 32 32 H 1.09002 * 109.46993 * 186.04712 * 12 2 1 33 33 H 0.96699 * 113.99871 * 59.99211 * 15 13 12 34 34 H 1.08995 * 109.47210 * 59.99879 * 16 13 12 35 35 H 1.08997 * 109.46954 * 299.99863 * 16 13 12 36 36 H 1.00902 * 111.00533 * 56.04323 * 17 16 13 37 37 H 1.09000 * 109.47033 * 300.00113 * 18 17 16 38 38 H 1.09001 * 109.46544 * 60.00058 * 18 17 16 39 39 H 1.09000 * 109.47486 * 299.99976 * 19 18 17 40 40 H 1.09001 * 109.47362 * 60.00699 * 19 18 17 41 41 H 0.96700 * 114.00661 * 309.66736 * 21 20 19 42 42 H 1.09000 * 113.61551 * 334.56942 * 22 20 19 43 43 H 1.09000 * 113.61368 * 105.47075 * 22 20 19 44 44 H 1.09005 * 113.61449 * 270.88287 * 23 22 20 45 45 H 1.08998 * 113.61202 * 139.98285 * 23 22 20 46 46 H 1.08997 * 113.61077 * 254.52583 * 24 20 19 47 47 H 1.09000 * 113.61202 * 25.43226 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0485 6 6 2.0269 3.3495 -1.5284 7 7 2.7121 4.0017 -0.6149 8 14 1.5819 4.1872 -3.1376 9 1 0.8138 3.2450 -3.9904 10 1 0.7544 5.3883 -2.8581 11 1 2.8233 4.5947 -3.8434 12 6 1.9954 -0.7661 1.1375 13 6 1.6313 -2.2427 0.9702 14 1 0.5531 -2.3389 0.8432 15 8 2.2954 -2.7697 -0.1801 16 6 2.0699 -3.0200 2.2130 17 7 1.7198 -4.4376 2.0526 18 6 2.1273 -5.2169 3.2294 19 6 1.7463 -6.6847 3.0259 20 6 2.1702 -7.4962 4.2518 21 8 1.6596 -6.9617 5.4747 22 6 3.6757 -7.8072 4.2942 23 6 3.2925 -9.2054 4.8070 24 6 1.9421 -9.0092 4.0979 25 1 -0.3633 0.4513 0.9233 26 1 -0.3634 0.5741 -0.8524 27 1 -0.3634 -1.0252 -0.0708 28 1 1.5612 1.9273 0.8309 29 1 3.0797 1.3443 0.1082 30 1 2.9867 4.9179 -0.7769 31 1 1.5611 -0.3874 2.0627 32 1 3.0797 -0.6612 1.1755 33 1 3.2599 -2.7167 -0.1361 34 1 1.5634 -2.6180 3.0905 35 1 3.1481 -2.9238 2.3400 36 1 2.1248 -4.8171 1.2100 37 1 3.2061 -5.1362 3.3627 38 1 1.6218 -4.8300 4.1142 39 1 0.6675 -6.7650 2.8928 40 1 2.2515 -7.0719 2.1410 41 1 1.8208 -6.0149 5.5878 42 1 4.1475 -7.8166 3.3116 43 1 4.2245 -7.2102 5.0226 44 1 3.2111 -9.2652 5.8923 45 1 3.8965 -10.0070 4.3820 46 1 1.0913 -9.3826 4.6679 47 1 1.9399 -9.3473 3.0617 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582781758.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:21 Heat of formation + Delta-G solvation = -108.470856 kcal Electronic energy + Delta-G solvation = -22708.391889 eV Core-core repulsion = 19311.398073 eV Total energy + Delta-G solvation = -3396.993816 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 286.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.73895 -39.60469 -37.54214 -36.25089 -35.56041 -34.63152 -32.32581 -30.45463 -28.94373 -27.44468 -26.71631 -25.68385 -24.31108 -22.69834 -22.35283 -21.72532 -20.60035 -18.58730 -17.74021 -17.49163 -17.19462 -16.74041 -16.53190 -16.33652 -15.97030 -15.89410 -15.50940 -15.18954 -14.89982 -14.61547 -14.42866 -13.88204 -13.70242 -13.66291 -13.29469 -13.21049 -12.93165 -12.76822 -12.63647 -12.56088 -12.50344 -12.38399 -12.06011 -12.01332 -11.98292 -11.75047 -11.62458 -11.40840 -11.08127 -10.71291 -10.63445 -10.52934 -9.38428 -8.97257 -8.21874 -6.31566 1.40450 1.41024 1.55154 2.39636 2.88501 3.10578 3.13096 3.39440 3.58012 3.68033 3.70639 3.91610 3.94346 4.04356 4.09645 4.22321 4.27003 4.33503 4.47159 4.54240 4.58429 4.63703 4.68834 4.72690 4.79000 4.80512 4.83036 4.96846 5.02835 5.03584 5.05980 5.14988 5.16697 5.21977 5.31569 5.38517 5.44407 5.64273 5.99998 6.05450 6.31074 6.43794 6.62879 6.77225 6.84712 6.95123 7.38171 8.89269 Molecular weight = 286.20amu Principal moments of inertia in cm(-1) A = 0.050677 B = 0.002180 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.386747 B =12841.246946 C =12898.346685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.541 5.541 3 C 0.207 3.793 4 C -0.523 4.523 5 H 0.061 0.939 6 C -0.001 4.001 7 N -0.934 5.934 8 Si 0.970 3.030 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.024 3.976 13 C 0.128 3.872 14 H 0.093 0.907 15 O -0.560 6.560 16 C 0.039 3.961 17 N -0.691 5.691 18 C 0.058 3.942 19 C -0.126 4.126 20 C 0.105 3.895 21 O -0.561 6.561 22 C -0.163 4.163 23 C -0.137 4.137 24 C -0.132 4.132 25 H 0.011 0.989 26 H 0.055 0.945 27 H 0.076 0.924 28 H -0.039 1.039 29 H 0.005 0.995 30 H 0.265 0.735 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.379 0.621 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.349 0.651 37 H 0.038 0.962 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.387 0.613 42 H 0.097 0.903 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.322 -24.537 10.470 26.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.265 5.265 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.575 5.575 8 Si 0.795 3.205 9 H -0.189 1.189 10 H -0.204 1.204 11 H -0.203 1.203 12 C -0.105 4.105 13 C 0.068 3.932 14 H 0.111 0.889 15 O -0.366 6.366 16 C -0.091 4.091 17 N -0.323 5.323 18 C -0.071 4.071 19 C -0.164 4.164 20 C 0.064 3.936 21 O -0.369 6.369 22 C -0.201 4.201 23 C -0.174 4.174 24 C -0.169 4.169 25 H 0.030 0.970 26 H 0.074 0.926 27 H 0.094 0.906 28 H -0.021 1.021 29 H 0.023 0.977 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.227 0.773 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.168 0.832 37 H 0.056 0.944 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.238 0.762 42 H 0.116 0.884 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.114 -25.239 10.190 27.218 hybrid contribution 1.320 2.080 0.281 2.479 sum 1.434 -23.159 10.471 25.456 Atomic orbital electron populations 1.22235 0.87880 1.01089 0.99668 1.61939 1.07962 1.14911 1.41698 1.19397 0.93652 0.83926 0.94917 1.21502 1.34717 0.97477 1.02397 0.92098 1.25929 0.95060 0.98067 1.00779 1.70087 1.39423 1.11890 1.36110 0.85315 0.78106 0.78139 0.78943 1.18876 1.20353 1.20280 1.22833 1.00246 0.95364 0.92037 1.21792 0.97701 0.88804 0.84914 0.88893 1.86575 1.24083 1.83647 1.42273 1.22487 0.99111 0.89209 0.98321 1.60323 1.64665 1.01656 1.05691 1.21932 0.98211 0.93173 0.93767 1.22004 1.02407 0.94030 0.97963 1.22278 0.93598 0.93992 0.83736 1.86451 1.81669 1.29687 1.39100 1.23630 0.96258 0.97684 1.02486 1.22751 0.96855 0.97515 1.00277 1.23110 0.98439 0.93148 1.02186 0.97017 0.92645 0.90560 1.02139 0.97736 0.92670 0.94916 0.91312 0.77300 0.89989 0.93914 0.83180 0.94410 0.90947 0.91460 0.89943 0.76213 0.88448 0.91262 0.90781 0.90241 0.91611 0.87518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.57 9.14 127.69 1.17 2.74 16 2 N -0.54 -23.63 4.70 -927.09 -4.36 -27.99 16 3 C 0.21 11.18 4.72 85.56 0.40 11.59 16 4 C -0.52 -30.16 8.46 25.60 0.22 -29.94 16 5 H 0.06 3.49 7.12 -2.91 -0.02 3.47 16 6 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 7 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 8 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 9 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 C 0.02 0.83 4.59 86.30 0.40 1.22 16 13 C 0.13 3.43 3.19 30.60 0.10 3.53 16 14 H 0.09 2.73 6.34 -2.39 -0.02 2.71 16 15 O -0.56 -15.73 12.62 -148.98 -1.88 -17.61 16 16 C 0.04 0.78 5.39 86.31 0.47 1.25 16 17 N -0.69 -12.75 6.50 -513.88 -3.34 -16.09 16 18 C 0.06 0.83 5.25 86.30 0.45 1.28 16 19 C -0.13 -1.70 5.11 30.60 0.16 -1.54 16 20 C 0.11 1.44 1.38 -10.26 -0.01 1.43 16 21 O -0.56 -9.17 13.39 -148.98 -1.99 -11.17 16 22 C -0.16 -1.91 7.32 31.12 0.23 -1.68 16 23 C -0.14 -1.65 8.02 31.12 0.25 -1.40 16 24 C -0.13 -1.70 7.47 31.12 0.23 -1.47 16 25 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 26 H 0.05 2.40 6.76 -2.39 -0.02 2.38 16 27 H 0.08 2.59 6.37 -2.39 -0.02 2.57 16 28 H -0.04 -2.28 8.12 -2.39 -0.02 -2.30 16 29 H 0.00 0.26 7.93 -2.39 -0.02 0.24 16 30 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 31 H 0.03 1.09 8.12 -2.39 -0.02 1.07 16 32 H 0.07 2.30 7.93 -2.39 -0.02 2.28 16 33 H 0.38 8.35 9.05 -74.06 -0.67 7.68 16 34 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.35 6.40 8.12 -89.69 -0.73 5.68 16 37 H 0.04 0.49 8.05 -2.39 -0.02 0.48 16 38 H 0.07 0.99 6.75 -2.39 -0.02 0.98 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 0.98 8.05 -2.39 -0.02 0.96 16 41 H 0.39 4.20 7.18 -74.06 -0.53 3.67 16 42 H 0.10 0.96 8.04 -2.39 -0.02 0.94 16 43 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 45 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.11 1.07 8.10 -2.39 -0.02 1.05 16 Total: -1.00 -68.25 372.35 -5.72 -73.97 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -0.97 Total: 20.88 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 4.52 Total: -12.58 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -7.42 Total: -100.30 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -3.88 Total: -28.78 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -68.25 -5.72 -73.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582781758.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.503 kcal (2) G-P(sol) polarization free energy of solvation -68.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds