Wall clock time and date at job start Tue Mar 31 2020 03:15:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.42904 * 113.99776 * 2 1
4 4 C 1.52998 * 109.46931 * 179.97438 * 3 2 1
5 5 H 1.09002 * 109.47188 * 174.99722 * 4 3 2
6 6 N 1.46901 * 109.47430 * 294.99860 * 4 3 2
7 7 C 1.46899 * 111.00076 * 205.00203 * 6 4 3
8 8 C 1.52996 * 109.46798 * 179.97438 * 7 6 4
9 9 H 1.09000 * 109.47555 * 304.99556 * 8 7 6
10 10 O 1.42901 * 109.47612 * 65.00079 * 8 7 6
11 11 C 1.53000 * 109.47000 * 185.00066 * 8 7 6
12 12 N 1.46905 * 109.47114 * 180.02562 * 11 8 7
13 13 C 1.46900 * 110.99850 * 293.94896 * 12 11 8
14 14 C 1.46906 * 111.00051 * 169.99929 * 12 11 8
15 15 C 1.50699 * 109.47140 * 189.99841 * 14 12 11
16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 12
17 17 C 1.37873 * 119.99861 * 180.02562 * 15 14 12
18 18 N 1.31522 * 120.00244 * 359.97438 * 17 15 14
19 19 Si 1.86803 * 119.99980 * 180.02562 * 17 15 14
20 20 H 1.48500 * 109.47229 * 89.99965 * 19 17 15
21 21 H 1.48500 * 109.46876 * 209.99805 * 19 17 15
22 22 H 1.48499 * 109.47161 * 329.99530 * 19 17 15
23 23 C 1.53001 * 109.47186 * 54.99958 * 4 3 2
24 24 C 1.53001 * 117.49822 * 128.74406 * 23 4 3
25 25 C 1.52998 * 117.49932 * 60.08719 * 23 4 3
26 26 H 1.09002 * 109.46901 * 180.02562 * 1 2 3
27 27 H 1.09002 * 109.46779 * 299.99985 * 1 2 3
28 28 H 1.09000 * 109.47064 * 60.00390 * 1 2 3
29 29 H 1.08997 * 109.47530 * 59.99976 * 3 2 1
30 30 H 1.08998 * 109.46985 * 300.00141 * 3 2 1
31 31 H 1.00896 * 110.99720 * 81.04073 * 6 4 3
32 32 H 1.08995 * 109.47186 * 60.00137 * 7 6 4
33 33 H 1.08998 * 109.47052 * 299.99451 * 7 6 4
34 34 H 0.96697 * 113.99735 * 59.99435 * 10 8 7
35 35 H 1.08997 * 109.47704 * 60.00204 * 11 8 7
36 36 H 1.09000 * 109.47058 * 299.99530 * 11 8 7
37 37 H 1.08996 * 109.47030 * 296.04770 * 13 12 11
38 38 H 1.08999 * 109.46702 * 56.04909 * 13 12 11
39 39 H 1.08996 * 109.46890 * 176.04778 * 13 12 11
40 40 H 1.09004 * 109.47040 * 309.99779 * 14 12 11
41 41 H 1.09000 * 109.47033 * 69.99731 * 14 12 11
42 42 H 0.96992 * 120.00038 * 179.97438 * 18 17 15
43 43 H 1.08997 * 115.55294 * 274.41373 * 23 4 3
44 44 H 1.08998 * 117.49936 * 0.02562 * 24 23 4
45 45 H 1.09000 * 117.49686 * 145.01950 * 24 23 4
46 46 H 1.08995 * 117.49742 * 214.98259 * 25 23 4
47 47 H 1.08997 * 117.49843 * 359.97438 * 25 23 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1847 0.0006
5 1 3.9785 2.1766 -0.0890
6 7 3.9769 0.5628 1.2562
7 6 5.3587 0.9457 1.5759
8 6 5.7816 0.2806 2.8873
9 1 5.0677 0.5353 3.6706
10 8 5.8127 -1.1375 2.7139
11 6 7.1733 0.7765 3.2849
12 7 7.5797 0.1375 4.5437
13 6 6.7232 0.5722 5.6552
14 6 8.9951 0.4017 4.8353
15 6 9.4397 -0.4602 5.9888
16 1 8.7406 -1.1362 6.4586
17 6 10.7385 -0.3848 6.4451
18 7 11.5897 0.4389 5.8733
19 14 11.2899 -1.4536 7.8745
20 1 11.8097 -2.7443 7.3558
21 1 12.3615 -0.7560 8.6296
22 1 10.1368 -1.7100 8.7744
23 6 3.9790 0.3194 -1.1806
24 6 5.0636 0.8829 -2.1011
25 6 3.6140 0.8017 -2.5860
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 1.6886 1.8465 0.8899
30 1 1.6886 1.8464 -0.8900
31 1 3.8796 -0.4406 1.2163
32 1 5.4203 2.0287 1.6818
33 1 6.0207 0.6207 0.7733
34 1 6.4281 -1.4368 2.0307
35 1 7.1497 1.8581 3.4172
36 1 7.8872 0.5217 2.5016
37 1 6.8529 1.6423 5.8168
38 1 5.6808 0.3650 5.4131
39 1 7.0003 0.0318 6.5602
40 1 9.5965 0.1705 3.9561
41 1 9.1222 1.4523 5.0965
42 1 12.5033 0.4921 6.1945
43 1 3.9794 -0.7558 -1.0018
44 1 5.4613 1.8698 -1.8649
45 1 5.7772 0.1782 -2.5281
46 1 3.3745 0.0438 -3.3318
47 1 3.0575 1.7352 -2.6690
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000583138877.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:15:49
Heat of formation + Delta-G solvation = -66.813318 kcal
Electronic energy + Delta-G solvation = -23230.616616 eV
Core-core repulsion = 19835.429207 eV
Total energy + Delta-G solvation = -3395.187410 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 286.204 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-39.31730 -37.98419 -37.11023 -35.62203 -34.34559 -32.48648 -30.63409 -28.69768
-27.03484 -26.45685 -25.47495 -23.78461 -22.97225 -22.53079 -21.26286 -20.40312
-20.05287 -16.76769 -16.62287 -16.41410 -16.10373 -15.84472 -15.60421 -15.21665
-14.77809 -14.74862 -14.18643 -14.01589 -13.66523 -13.51269 -13.15041 -12.67057
-12.54443 -12.27258 -11.88396 -11.86801 -11.83419 -11.72292 -11.28771 -11.18084
-11.06724 -10.86024 -10.72395 -10.70552 -10.60164 -10.24817 -10.22086 -9.94502
-9.81816 -9.54608 -9.07541 -8.44105 -8.40294 -7.14517 -5.99903 -4.00624
3.34971 3.40428 3.44896 3.52455 3.64027 3.94459 4.39766 4.45772
4.63632 4.70975 4.79045 4.95770 4.97946 5.03856 5.12047 5.19884
5.23589 5.29052 5.34584 5.37071 5.39387 5.43848 5.45732 5.56392
5.60312 5.67105 5.75154 5.83164 5.85363 5.97344 6.11542 6.26029
6.38552 6.48533 6.82994 6.88333 7.04792 7.30828 7.36742 7.40018
7.84017 8.03280 8.14882 8.25294 8.59766 9.07698 9.63534 11.11156
Molecular weight = 286.20amu
Principal moments of inertia in cm(-1)
A = 0.029355 B = 0.002766 C = 0.002633
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 953.616427 B =10119.920470 C =10629.829554
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 O -0.380 6.380
3 C 0.076 3.924
4 C 0.120 3.880
5 H 0.088 0.912
6 N -0.671 5.671
7 C 0.027 3.973
8 C 0.114 3.886
9 H 0.102 0.898
10 O -0.545 6.545
11 C 0.025 3.975
12 N -0.529 5.529
13 C 0.038 3.962
14 C 0.192 3.808
15 C -0.504 4.504
16 H 0.064 0.936
17 C 0.053 3.947
18 N -0.901 5.901
19 Si 0.899 3.101
20 H -0.280 1.280
21 H -0.288 1.288
22 H -0.273 1.273
23 C -0.169 4.169
24 C -0.183 4.183
25 C -0.173 4.173
26 H 0.083 0.917
27 H 0.039 0.961
28 H 0.036 0.964
29 H 0.056 0.944
30 H 0.046 0.954
31 H 0.356 0.644
32 H 0.075 0.925
33 H 0.035 0.965
34 H 0.367 0.633
35 H 0.028 0.972
36 H 0.068 0.932
37 H 0.008 0.992
38 H 0.048 0.952
39 H 0.072 0.928
40 H 0.027 0.973
41 H -0.011 1.011
42 H 0.260 0.740
43 H 0.107 0.893
44 H 0.092 0.908
45 H 0.093 0.907
46 H 0.092 0.908
47 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.276 3.233 -16.273 25.433
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.299 6.299
3 C -0.001 4.001
4 C 0.009 3.991
5 H 0.106 0.894
6 N -0.303 5.303
7 C -0.103 4.103
8 C 0.054 3.946
9 H 0.120 0.880
10 O -0.349 6.349
11 C -0.105 4.105
12 N -0.253 5.253
13 C -0.111 4.111
14 C 0.067 3.933
15 C -0.542 4.542
16 H 0.082 0.918
17 C -0.147 4.147
18 N -0.541 5.541
19 Si 0.727 3.273
20 H -0.206 1.206
21 H -0.214 1.214
22 H -0.198 1.198
23 C -0.189 4.189
24 C -0.220 4.220
25 C -0.211 4.211
26 H 0.101 0.899
27 H 0.058 0.942
28 H 0.054 0.946
29 H 0.074 0.926
30 H 0.064 0.936
31 H 0.176 0.824
32 H 0.093 0.907
33 H 0.053 0.947
34 H 0.213 0.787
35 H 0.046 0.954
36 H 0.086 0.914
37 H 0.027 0.973
38 H 0.066 0.934
39 H 0.091 0.909
40 H 0.045 0.955
41 H 0.007 0.993
42 H 0.070 0.930
43 H 0.125 0.875
44 H 0.111 0.889
45 H 0.111 0.889
46 H 0.110 0.890
47 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -19.749 3.128 -15.403 25.241
hybrid contribution 1.330 0.220 -0.368 1.397
sum -18.420 3.348 -15.771 24.479
Atomic orbital electron populations
1.22694 0.81592 1.02522 0.99578 1.87906 1.19070 1.27598 1.95283
1.22565 0.92770 0.85044 0.99712 1.21259 0.93284 0.97462 0.87106
0.89410 1.60529 1.21875 1.16420 1.31448 1.22721 0.89009 1.00904
0.97658 1.21973 0.96394 0.80995 0.95227 0.88015 1.86601 1.65641
1.20955 1.61698 1.22699 0.96185 0.96290 0.95299 1.62023 1.05877
1.57024 1.00396 1.22235 0.95913 0.97085 0.95857 1.19749 0.81676
0.94908 0.96940 1.21180 0.95716 1.22280 1.15059 0.91788 1.24998
0.96658 0.95790 0.97302 1.69962 1.04914 1.37399 1.41854 0.86486
0.78274 0.80351 0.82237 1.20628 1.21382 1.19830 1.23076 1.03403
1.00464 0.91970 1.23061 0.92007 1.02582 1.04353 1.22835 0.98088
1.02869 0.97307 0.89870 0.94196 0.94586 0.92589 0.93550 0.82403
0.90678 0.94663 0.78734 0.95411 0.91401 0.97315 0.93368 0.90901
0.95451 0.99333 0.92995 0.87493 0.88914 0.88882 0.88998 0.89095
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.25 11.01 101.05 1.11 1.36 16
2 O -0.38 -3.91 10.14 -35.23 -0.36 -4.27 16
3 C 0.08 0.69 5.54 37.16 0.21 0.90 16
4 C 0.12 1.13 2.61 -67.71 -0.18 0.95 16
5 H 0.09 0.79 7.56 -51.93 -0.39 0.40 16
6 N -0.67 -7.58 6.20 -106.73 -0.66 -8.24 16
7 C 0.03 0.32 5.16 -3.83 -0.02 0.30 16
8 C 0.11 1.68 3.08 -26.73 -0.08 1.59 16
9 H 0.10 1.62 6.47 -51.93 -0.34 1.28 16
10 O -0.55 -8.56 12.72 -35.23 -0.45 -9.01 16
11 C 0.03 0.44 4.62 -3.82 -0.02 0.42 16
12 N -0.53 -11.69 4.62 -244.36 -1.13 -12.82 16
13 C 0.04 0.77 9.16 60.06 0.55 1.32 16
14 C 0.19 5.12 4.72 -4.97 -0.02 5.09 16
15 C -0.50 -14.48 8.52 -34.44 -0.29 -14.77 16
16 H 0.06 1.84 7.10 -52.48 -0.37 1.46 16
17 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16
18 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16
19 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16
20 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16
21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
22 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16
23 C -0.17 -1.53 4.60 -90.62 -0.42 -1.95 16
24 C -0.18 -1.53 10.18 -26.70 -0.27 -1.80 16
25 C -0.17 -1.37 9.80 -26.70 -0.26 -1.63 16
26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16
27 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16
28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16
29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
30 H 0.05 0.35 7.48 -51.93 -0.39 -0.04 16
31 H 0.36 4.37 7.90 -39.29 -0.31 4.06 16
32 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16
33 H 0.04 0.40 8.01 -51.93 -0.42 -0.02 16
34 H 0.37 4.77 9.04 45.56 0.41 5.19 16
35 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16
36 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16
37 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16
38 H 0.05 0.87 6.30 -51.93 -0.33 0.54 16
39 H 0.07 1.59 6.86 -51.93 -0.36 1.24 16
40 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16
41 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16
42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16
43 H 0.11 1.10 7.93 -51.93 -0.41 0.68 16
44 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16
45 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16
46 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16
47 H 0.09 0.65 7.67 -51.93 -0.40 0.25 16
LS Contribution 378.11 15.07 5.70 5.70
Total: -1.00 -31.51 378.11 -8.87 -40.38
By element:
Atomic # 1 Polarization: 12.32 SS G_CDS: -7.89 Total: 4.42 kcal
Atomic # 6 Polarization: -6.97 SS G_CDS: 0.21 Total: -6.77 kcal
Atomic # 7 Polarization: -46.42 SS G_CDS: -1.05 Total: -47.47 kcal
Atomic # 8 Polarization: -12.47 SS G_CDS: -0.81 Total: -13.28 kcal
Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -31.51 -8.87 -40.38 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000583138877.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.437 kcal
(2) G-P(sol) polarization free energy of solvation -31.508 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.945 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.377 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.813 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds