Wall clock time and date at job start Tue Mar 31 2020 03:15:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.42904 * 113.99776 * 2 1
4 4 C 1.52998 * 109.46931 * 179.97438 * 3 2 1
5 5 H 1.09002 * 109.47188 * 174.99722 * 4 3 2
6 6 N 1.46901 * 109.47430 * 294.99860 * 4 3 2
7 7 C 1.46899 * 111.00076 * 205.00203 * 6 4 3
8 8 C 1.52996 * 109.46798 * 179.97438 * 7 6 4
9 9 H 1.09000 * 109.47555 * 304.99556 * 8 7 6
10 10 O 1.42901 * 109.47612 * 65.00079 * 8 7 6
11 11 C 1.53000 * 109.47000 * 185.00066 * 8 7 6
12 12 N 1.46905 * 109.47114 * 180.02562 * 11 8 7
13 13 C 1.46900 * 110.99850 * 293.94896 * 12 11 8
14 14 C 1.46906 * 111.00051 * 169.99929 * 12 11 8
15 15 C 1.50699 * 109.47140 * 189.99841 * 14 12 11
16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 12
17 17 C 1.37873 * 119.99861 * 180.02562 * 15 14 12
18 18 N 1.31522 * 120.00244 * 359.97438 * 17 15 14
19 19 Si 1.86803 * 119.99980 * 180.02562 * 17 15 14
20 20 H 1.48500 * 109.47229 * 89.99965 * 19 17 15
21 21 H 1.48500 * 109.46876 * 209.99805 * 19 17 15
22 22 H 1.48499 * 109.47161 * 329.99530 * 19 17 15
23 23 C 1.53001 * 109.47186 * 54.99958 * 4 3 2
24 24 C 1.53001 * 117.49822 * 128.74406 * 23 4 3
25 25 C 1.52998 * 117.49932 * 60.08719 * 23 4 3
26 26 H 1.09002 * 109.46901 * 180.02562 * 1 2 3
27 27 H 1.09002 * 109.46779 * 299.99985 * 1 2 3
28 28 H 1.09000 * 109.47064 * 60.00390 * 1 2 3
29 29 H 1.08997 * 109.47530 * 59.99976 * 3 2 1
30 30 H 1.08998 * 109.46985 * 300.00141 * 3 2 1
31 31 H 1.00896 * 110.99720 * 81.04073 * 6 4 3
32 32 H 1.08995 * 109.47186 * 60.00137 * 7 6 4
33 33 H 1.08998 * 109.47052 * 299.99451 * 7 6 4
34 34 H 0.96697 * 113.99735 * 59.99435 * 10 8 7
35 35 H 1.08997 * 109.47704 * 60.00204 * 11 8 7
36 36 H 1.09000 * 109.47058 * 299.99530 * 11 8 7
37 37 H 1.08996 * 109.47030 * 296.04770 * 13 12 11
38 38 H 1.08999 * 109.46702 * 56.04909 * 13 12 11
39 39 H 1.08996 * 109.46890 * 176.04778 * 13 12 11
40 40 H 1.09004 * 109.47040 * 309.99779 * 14 12 11
41 41 H 1.09000 * 109.47033 * 69.99731 * 14 12 11
42 42 H 0.96992 * 120.00038 * 179.97438 * 18 17 15
43 43 H 1.08997 * 115.55294 * 274.41373 * 23 4 3
44 44 H 1.08998 * 117.49936 * 0.02562 * 24 23 4
45 45 H 1.09000 * 117.49686 * 145.01950 * 24 23 4
46 46 H 1.08995 * 117.49742 * 214.98259 * 25 23 4
47 47 H 1.08997 * 117.49843 * 359.97438 * 25 23 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1847 0.0006
5 1 3.9785 2.1766 -0.0890
6 7 3.9769 0.5628 1.2562
7 6 5.3587 0.9457 1.5759
8 6 5.7816 0.2806 2.8873
9 1 5.0677 0.5353 3.6706
10 8 5.8127 -1.1375 2.7139
11 6 7.1733 0.7765 3.2849
12 7 7.5797 0.1375 4.5437
13 6 6.7232 0.5722 5.6552
14 6 8.9951 0.4017 4.8353
15 6 9.4397 -0.4602 5.9888
16 1 8.7406 -1.1362 6.4586
17 6 10.7385 -0.3848 6.4451
18 7 11.5897 0.4389 5.8733
19 14 11.2899 -1.4536 7.8745
20 1 11.8097 -2.7443 7.3558
21 1 12.3615 -0.7560 8.6296
22 1 10.1368 -1.7100 8.7744
23 6 3.9790 0.3194 -1.1806
24 6 5.0636 0.8829 -2.1011
25 6 3.6140 0.8017 -2.5860
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 1.6886 1.8465 0.8899
30 1 1.6886 1.8464 -0.8900
31 1 3.8796 -0.4406 1.2163
32 1 5.4203 2.0287 1.6818
33 1 6.0207 0.6207 0.7733
34 1 6.4281 -1.4368 2.0307
35 1 7.1497 1.8581 3.4172
36 1 7.8872 0.5217 2.5016
37 1 6.8529 1.6423 5.8168
38 1 5.6808 0.3650 5.4131
39 1 7.0003 0.0318 6.5602
40 1 9.5965 0.1705 3.9561
41 1 9.1222 1.4523 5.0965
42 1 12.5033 0.4921 6.1945
43 1 3.9794 -0.7558 -1.0018
44 1 5.4613 1.8698 -1.8649
45 1 5.7772 0.1782 -2.5281
46 1 3.3745 0.0438 -3.3318
47 1 3.0575 1.7352 -2.6690
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000583138877.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:15:48
Heat of formation + Delta-G solvation = -91.689028 kcal
Electronic energy + Delta-G solvation = -23231.695308 eV
Core-core repulsion = 19835.429207 eV
Total energy + Delta-G solvation = -3396.266101 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 286.204 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-40.13938 -39.22855 -37.84650 -37.14140 -35.28243 -34.61419 -31.70647 -29.96965
-28.84221 -27.40646 -26.73624 -25.11339 -23.97153 -23.18671 -22.61863 -21.81231
-21.04739 -18.57370 -17.56602 -17.37637 -17.16552 -17.01394 -16.70272 -16.28960
-16.13970 -15.88262 -15.64877 -15.24353 -15.04064 -14.62205 -14.34342 -13.91894
-13.71008 -13.59650 -13.21385 -13.02604 -12.85243 -12.67820 -12.56408 -12.51438
-12.46689 -12.37837 -12.34150 -12.00919 -11.86339 -11.59403 -11.40286 -11.38720
-10.94159 -10.63424 -10.61645 -10.46149 -9.29770 -8.95284 -8.20888 -6.30682
1.40897 1.42537 1.53774 2.40253 2.84999 2.97086 3.01094 3.11559
3.44139 3.70379 3.75110 3.96948 4.04248 4.09972 4.16490 4.28260
4.30019 4.37541 4.48655 4.53318 4.58683 4.60327 4.64716 4.70534
4.73709 4.74035 4.78758 4.85987 4.87648 4.93841 5.04079 5.07082
5.16740 5.18468 5.24001 5.26953 5.33256 5.65008 6.03466 6.08312
6.33027 6.38250 6.46770 6.64354 6.85496 6.97127 7.39079 8.90171
Molecular weight = 286.20amu
Principal moments of inertia in cm(-1)
A = 0.029355 B = 0.002766 C = 0.002633
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 953.616427 B =10119.920470 C =10629.829554
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.403 6.403
3 C 0.077 3.923
4 C 0.121 3.879
5 H 0.096 0.904
6 N -0.676 5.676
7 C 0.041 3.959
8 C 0.128 3.872
9 H 0.093 0.907
10 O -0.560 6.560
11 C 0.025 3.975
12 N -0.539 5.539
13 C 0.042 3.958
14 C 0.207 3.793
15 C -0.523 4.523
16 H 0.060 0.940
17 C 0.001 3.999
18 N -0.935 5.935
19 Si 0.969 3.031
20 H -0.273 1.273
21 H -0.281 1.281
22 H -0.266 1.266
23 C -0.175 4.175
24 C -0.184 4.184
25 C -0.165 4.165
26 H 0.089 0.911
27 H 0.042 0.958
28 H 0.049 0.951
29 H 0.051 0.949
30 H 0.063 0.937
31 H 0.349 0.651
32 H 0.083 0.917
33 H 0.042 0.958
34 H 0.378 0.622
35 H 0.033 0.967
36 H 0.067 0.933
37 H 0.010 0.990
38 H 0.075 0.925
39 H 0.053 0.947
40 H 0.004 0.996
41 H -0.039 1.039
42 H 0.265 0.735
43 H 0.092 0.908
44 H 0.097 0.903
45 H 0.092 0.908
46 H 0.094 0.906
47 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.379 3.145 -16.740 26.560
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.322 6.322
3 C 0.000 4.000
4 C 0.011 3.989
5 H 0.114 0.886
6 N -0.307 5.307
7 C -0.090 4.090
8 C 0.068 3.932
9 H 0.111 0.889
10 O -0.366 6.366
11 C -0.104 4.104
12 N -0.263 5.263
13 C -0.106 4.106
14 C 0.081 3.919
15 C -0.561 4.561
16 H 0.078 0.922
17 C -0.197 4.197
18 N -0.576 5.576
19 Si 0.794 3.206
20 H -0.198 1.198
21 H -0.206 1.206
22 H -0.190 1.190
23 C -0.195 4.195
24 C -0.221 4.221
25 C -0.202 4.202
26 H 0.107 0.893
27 H 0.060 0.940
28 H 0.068 0.932
29 H 0.069 0.931
30 H 0.082 0.918
31 H 0.169 0.831
32 H 0.101 0.899
33 H 0.060 0.940
34 H 0.226 0.774
35 H 0.051 0.949
36 H 0.086 0.914
37 H 0.028 0.972
38 H 0.094 0.906
39 H 0.072 0.928
40 H 0.022 0.978
41 H -0.021 1.021
42 H 0.073 0.927
43 H 0.110 0.890
44 H 0.115 0.885
45 H 0.110 0.890
46 H 0.113 0.887
47 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -20.878 3.045 -15.891 26.414
hybrid contribution 1.619 0.259 -0.284 1.664
sum -19.259 3.304 -16.175 25.366
Atomic orbital electron populations
1.22828 0.80379 1.03241 1.00359 1.87874 1.20522 1.28333 1.95444
1.22590 0.92339 0.84797 1.00292 1.21303 0.93734 0.97586 0.86311
0.88649 1.60523 1.21281 1.16056 1.32868 1.22512 0.89570 1.00877
0.95993 1.21791 0.93980 0.80796 0.96607 0.88902 1.86564 1.66116
1.21477 1.62434 1.22808 0.98031 0.96430 0.93125 1.61934 1.03742
1.58136 1.02499 1.22199 0.96941 0.96787 0.94678 1.19405 0.84325
0.92816 0.95344 1.21471 0.96144 1.22628 1.15886 0.92159 1.25912
0.96657 0.97038 1.00078 1.70080 1.05363 1.38769 1.43370 0.85383
0.77997 0.78515 0.78729 1.19813 1.20615 1.18984 1.22930 1.04487
0.99585 0.92519 1.23103 0.92250 1.02693 1.04059 1.22904 0.97719
1.03289 0.96318 0.89285 0.93965 0.93215 0.93055 0.91849 0.83119
0.89897 0.94009 0.77449 0.94903 0.91434 0.97187 0.90622 0.92779
0.97763 1.02133 0.92664 0.88955 0.88463 0.88991 0.88711 0.87978
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.38 11.01 113.37 1.25 1.63 16
2 O -0.40 -7.76 10.14 -148.98 -1.51 -9.27 16
3 C 0.08 1.26 5.54 71.98 0.40 1.66 16
4 C 0.12 2.08 2.61 44.91 0.12 2.20 16
5 H 0.10 1.50 7.56 -2.39 -0.02 1.48 16
6 N -0.68 -14.37 6.20 -491.58 -3.05 -17.42 16
7 C 0.04 0.89 5.16 86.30 0.44 1.33 16
8 C 0.13 3.63 3.08 30.59 0.09 3.72 16
9 H 0.09 2.83 6.47 -2.39 -0.02 2.81 16
10 O -0.56 -17.08 12.72 -148.98 -1.90 -18.98 16
11 C 0.03 0.88 4.62 86.30 0.40 1.28 16
12 N -0.54 -23.96 4.62 -927.03 -4.28 -28.24 16
13 C 0.04 1.72 9.16 127.69 1.17 2.89 16
14 C 0.21 11.32 4.72 85.56 0.40 11.73 16
15 C -0.52 -30.49 8.52 25.60 0.22 -30.27 16
16 H 0.06 3.49 7.10 -2.91 -0.02 3.47 16
17 C 0.00 0.05 5.46 84.65 0.46 0.52 16
18 N -0.94 -57.01 13.29 21.45 0.28 -56.73 16
19 Si 0.97 45.16 29.54 68.60 2.03 47.19 16
20 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16
21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16
22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16
23 C -0.18 -2.93 4.60 -10.79 -0.05 -2.98 16
24 C -0.18 -2.77 10.18 30.62 0.31 -2.46 16
25 C -0.16 -2.27 9.80 30.62 0.30 -1.97 16
26 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16
27 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16
28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16
29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16
30 H 0.06 0.81 7.48 -2.39 -0.02 0.79 16
31 H 0.35 8.26 7.90 -89.70 -0.71 7.56 16
32 H 0.08 1.72 8.05 -2.39 -0.02 1.70 16
33 H 0.04 0.87 8.01 -2.39 -0.02 0.85 16
34 H 0.38 9.53 9.04 -74.06 -0.67 8.86 16
35 H 0.03 1.12 8.12 -2.39 -0.02 1.10 16
36 H 0.07 2.34 7.93 -2.39 -0.02 2.32 16
37 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16
38 H 0.08 2.64 6.30 -2.39 -0.02 2.62 16
39 H 0.05 2.37 6.86 -2.39 -0.02 2.36 16
40 H 0.00 0.25 7.93 -2.38 -0.02 0.23 16
41 H -0.04 -2.30 8.12 -2.39 -0.02 -2.32 16
42 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16
43 H 0.09 1.84 7.93 -2.39 -0.02 1.82 16
44 H 0.10 1.38 8.05 -2.39 -0.02 1.36 16
45 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16
46 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16
47 H 0.10 1.18 7.67 -2.39 -0.02 1.16 16
Total: -1.00 -67.23 378.11 -3.34 -70.57
By element:
Atomic # 1 Polarization: 24.05 SS G_CDS: -0.44 Total: 23.62 kcal
Atomic # 6 Polarization: -16.26 SS G_CDS: 5.52 Total: -10.74 kcal
Atomic # 7 Polarization: -95.34 SS G_CDS: -7.04 Total: -102.39 kcal
Atomic # 8 Polarization: -24.85 SS G_CDS: -3.41 Total: -28.25 kcal
Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal
Total: -67.23 -3.34 -70.57 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000583138877.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.119 kcal
(2) G-P(sol) polarization free energy of solvation -67.226 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.345 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.344 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.570 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.689 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds