Wall clock time and date at job start Tue Mar 31 2020 03:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46928 * 2 1 4 4 C 1.53001 * 109.46883 * 119.99435 * 2 1 3 5 5 O 1.42900 * 109.47238 * 300.00009 * 4 2 1 6 6 N 1.46897 * 109.47334 * 239.99293 * 2 1 3 7 7 C 1.46959 * 110.99936 * 183.80015 * 6 2 1 8 8 C 1.53044 * 109.36119 * 176.81378 * 7 6 2 9 9 N 1.46957 * 109.36888 * 58.40384 * 8 7 6 10 10 C 1.46902 * 111.00490 * 176.80970 * 9 8 7 11 11 C 1.52998 * 109.47130 * 199.50218 * 10 9 8 12 12 O 1.42902 * 109.46800 * 64.64628 * 11 10 9 13 13 C 1.42905 * 113.99621 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46940 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00096 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00106 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99715 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00062 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46968 * 89.99992 * 18 16 14 20 20 H 1.48500 * 109.46697 * 209.99778 * 18 16 14 21 21 H 1.48493 * 109.47014 * 329.99751 * 18 16 14 22 22 C 1.46959 * 110.87770 * 300.67650 * 9 8 7 23 23 C 1.46958 * 110.99756 * 60.00344 * 6 2 1 24 24 H 1.09002 * 109.46974 * 300.00336 * 1 2 3 25 25 H 1.08994 * 109.46602 * 60.00488 * 1 2 3 26 26 H 1.08998 * 109.46962 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46915 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.46670 * 299.99373 * 3 2 1 29 29 H 1.08998 * 109.47878 * 59.99648 * 3 2 1 30 30 H 1.09001 * 109.46962 * 180.02562 * 4 2 1 31 31 H 1.08998 * 109.47258 * 60.00259 * 4 2 1 32 32 H 0.96699 * 114.00220 * 179.97438 * 5 4 2 33 33 H 1.08999 * 109.48465 * 296.77860 * 7 6 2 34 34 H 1.08995 * 109.48746 * 56.84228 * 7 6 2 35 35 H 1.08999 * 109.49014 * 298.43407 * 8 7 6 36 36 H 1.08999 * 109.48645 * 178.36885 * 8 7 6 37 37 H 1.08997 * 109.46843 * 319.50452 * 10 9 8 38 38 H 1.08997 * 109.47045 * 79.49951 * 10 9 8 39 39 H 1.09002 * 109.47104 * 184.64218 * 11 10 9 40 40 H 1.08999 * 109.47405 * 304.64624 * 11 10 9 41 41 H 1.09002 * 109.47000 * 299.99807 * 13 12 11 42 42 H 1.08994 * 109.47307 * 60.00295 * 13 12 11 43 43 H 0.96996 * 119.99603 * 180.02562 * 17 16 14 44 44 H 1.08994 * 109.48860 * 299.35693 * 22 9 8 45 45 H 1.09002 * 109.51037 * 179.29418 * 22 9 8 46 46 H 1.08999 * 109.48836 * 303.15366 * 23 6 2 47 47 H 1.08999 * 109.48990 * 63.21991 * 23 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 1.5637 -0.0474 2.4160 6 7 2.0198 -0.6926 -1.1993 7 6 3.4860 -0.7914 -1.1886 8 6 3.9499 -1.5867 -2.4112 9 7 3.4788 -0.9204 -3.6334 10 6 3.9685 -1.6130 -4.8328 11 6 3.8908 -0.6690 -6.0343 12 8 4.7809 0.4309 -5.8342 13 6 4.7855 1.3771 -6.9051 14 6 5.7544 2.4876 -6.5900 15 1 6.3112 2.4721 -5.6647 16 6 5.9299 3.5234 -7.4830 17 7 5.2522 3.5419 -8.6099 18 14 7.1303 4.9002 -7.0921 19 1 8.4743 4.5491 -7.6172 20 1 6.6638 6.1588 -7.7275 21 1 7.2070 5.0872 -5.6210 22 6 2.0126 -0.8216 -3.6441 23 6 1.5486 -0.0263 -2.4215 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9562 -0.8901 29 1 1.6767 1.9565 0.8899 30 1 3.1300 -0.7208 1.2496 31 1 1.6767 -1.7488 1.2494 32 1 1.8486 -0.4511 3.2473 33 1 3.9180 0.2088 -1.2200 34 1 3.8096 -1.2993 -0.2801 35 1 3.5397 -2.5955 -2.3658 36 1 5.0387 -1.6365 -2.4208 37 1 5.0028 -1.9200 -4.6782 38 1 3.3528 -2.4925 -5.0213 39 1 4.1758 -1.2072 -6.9383 40 1 2.8715 -0.2971 -6.1389 41 1 5.0893 0.8810 -7.8269 42 1 3.7850 1.7914 -7.0282 43 1 5.3760 4.2704 -9.2383 44 1 1.5805 -1.8218 -3.6127 45 1 1.6885 -0.3138 -4.5526 46 1 0.4598 0.0235 -2.4119 47 1 1.9588 0.9826 -2.4669 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590167477.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:58 Heat of formation + Delta-G solvation = -80.879100 kcal Electronic energy + Delta-G solvation = -23979.685118 eV Core-core repulsion = 20583.887770 eV Total energy + Delta-G solvation = -3395.797348 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 286.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.10081 -37.86247 -36.57039 -35.53748 -32.76629 -32.05319 -31.07117 -29.07197 -27.42010 -26.91331 -26.58884 -25.03337 -23.15484 -22.24660 -21.34916 -20.21197 -18.77942 -17.89236 -16.35951 -16.17687 -15.68451 -15.30410 -15.19104 -15.05910 -14.71455 -14.59314 -14.29824 -14.14298 -13.88370 -13.56933 -13.05630 -12.87273 -12.56214 -12.45591 -12.24238 -11.87977 -11.70804 -11.61187 -11.46252 -11.32289 -11.12003 -10.93264 -10.81353 -10.75938 -10.62400 -10.41523 -10.30953 -10.09445 -9.91205 -9.02708 -8.73765 -8.38306 -8.08387 -7.99658 -6.05730 -4.06428 3.33371 3.38105 3.44154 3.50188 4.03224 4.22990 4.39802 4.66632 4.71870 4.88893 4.91166 5.00103 5.16140 5.27142 5.28128 5.30730 5.34245 5.41421 5.43061 5.51704 5.62154 5.66486 5.69129 5.71387 5.76792 5.82595 5.88351 5.93431 5.97253 6.03287 6.08621 6.13945 6.23843 6.28129 6.34028 6.94858 6.97826 7.17268 7.30491 7.31869 7.35756 7.50637 7.86217 8.23308 8.69343 9.08750 9.58267 11.06026 Molecular weight = 286.20amu Principal moments of inertia in cm(-1) A = 0.018812 B = 0.003510 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.032022 B = 7976.049883 C = 8743.946037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.108 3.892 3 C -0.177 4.177 4 C 0.088 3.912 5 O -0.570 6.570 6 N -0.528 5.528 7 C 0.049 3.951 8 C 0.061 3.939 9 N -0.525 5.525 10 C 0.062 3.938 11 C 0.069 3.931 12 O -0.380 6.380 13 C 0.195 3.805 14 C -0.509 4.509 15 H 0.066 0.934 16 C 0.055 3.945 17 N -0.901 5.901 18 Si 0.906 3.094 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.272 1.272 22 C 0.059 3.941 23 C 0.054 3.946 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.379 0.621 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.035 0.965 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.041 0.959 39 H 0.037 0.963 40 H 0.034 0.966 41 H 0.001 0.999 42 H 0.002 0.998 43 H 0.263 0.737 44 H 0.036 0.964 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.692 -11.861 18.219 23.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.019 3.981 3 C -0.236 4.236 4 C 0.009 3.991 5 O -0.375 6.375 6 N -0.254 5.254 7 C -0.079 4.079 8 C -0.067 4.067 9 N -0.250 5.250 10 C -0.066 4.066 11 C -0.009 4.009 12 O -0.300 6.300 13 C 0.120 3.880 14 C -0.548 4.548 15 H 0.084 0.916 16 C -0.146 4.146 17 N -0.540 5.540 18 Si 0.734 3.266 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.070 4.070 23 C -0.073 4.073 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.225 0.775 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.053 0.947 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.019 0.981 42 H 0.020 0.980 43 H 0.072 0.928 44 H 0.054 0.946 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.876 -11.341 17.770 22.873 hybrid contribution 0.727 0.351 0.089 0.812 sum -8.149 -10.991 17.859 22.498 Atomic orbital electron populations 1.21814 0.93180 1.02170 1.02002 1.20909 0.96035 0.92135 0.89033 1.22399 1.01503 0.96976 1.02694 1.22169 0.97097 0.94892 0.84894 1.86429 1.77611 1.57445 1.15975 1.62375 1.10256 1.51304 1.01446 1.22284 0.87556 1.00304 0.97774 1.22122 1.00006 0.95264 0.89322 1.62010 1.09432 1.52081 1.01444 1.22123 1.00430 0.93974 0.90026 1.22212 0.94049 0.89700 0.94929 1.87936 1.61772 1.34197 1.46064 1.20155 0.96374 0.86609 0.84829 1.21067 1.23182 1.05377 1.05128 0.91600 1.24948 0.96525 0.98269 0.94850 1.69970 1.41632 1.32941 1.09476 0.86358 0.80787 0.80831 0.78644 1.20519 1.21134 1.19652 1.22181 0.87886 0.98865 0.98021 1.22233 0.99850 0.96982 0.88275 0.91546 0.92466 0.92247 0.92444 0.92084 0.91431 0.93491 0.92983 0.77478 0.93045 0.90622 0.94694 0.90273 0.90334 0.94141 0.94461 0.94756 0.98097 0.97985 0.92765 0.94619 0.90038 0.90172 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 8.10 37.16 0.30 -1.04 16 2 C 0.11 1.15 0.54 -131.60 -0.07 1.08 16 3 C -0.18 -2.05 7.63 37.16 0.28 -1.77 16 4 C 0.09 0.79 5.56 37.16 0.21 1.00 16 5 O -0.57 -4.90 12.31 -35.23 -0.43 -5.33 16 6 N -0.53 -6.12 4.53 -218.82 -0.99 -7.11 16 7 C 0.05 0.58 4.83 -3.77 -0.02 0.56 16 8 C 0.06 0.78 5.57 -3.77 -0.02 0.76 16 9 N -0.52 -8.07 4.58 -234.47 -1.07 -9.14 16 10 C 0.06 0.95 5.39 -3.82 -0.02 0.93 16 11 C 0.07 1.32 6.13 37.16 0.23 1.55 16 12 O -0.38 -9.45 10.27 -35.23 -0.36 -9.81 16 13 C 0.19 5.49 5.69 36.01 0.20 5.69 16 14 C -0.51 -15.37 9.43 -34.44 -0.32 -15.69 16 15 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 18 Si 0.91 22.28 29.54 -169.99 -5.02 17.26 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.06 0.80 5.43 -3.76 -0.02 0.78 16 23 C 0.05 0.69 4.82 -3.76 -0.02 0.67 16 24 H 0.07 0.66 7.68 -51.93 -0.40 0.27 16 25 H 0.06 0.56 6.34 -51.93 -0.33 0.23 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.70 6.56 -51.93 -0.34 0.36 16 28 H 0.06 0.75 6.48 -51.93 -0.34 0.41 16 29 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 30 H 0.05 0.41 6.28 -51.93 -0.33 0.08 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.38 1.56 9.12 45.56 0.42 1.98 16 33 H 0.05 0.71 6.57 -51.93 -0.34 0.37 16 34 H 0.08 0.75 6.06 -51.93 -0.31 0.44 16 35 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.99 8.00 -51.93 -0.42 0.58 16 37 H 0.08 1.20 7.85 -51.93 -0.41 0.79 16 38 H 0.04 0.53 8.00 -51.93 -0.42 0.11 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.03 0.64 6.74 -51.93 -0.35 0.29 16 41 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 42 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.08 1.18 6.72 -51.93 -0.35 0.83 16 46 H 0.08 0.90 6.14 -51.93 -0.32 0.58 16 47 H 0.05 0.77 6.48 -51.93 -0.34 0.44 16 LS Contribution 356.22 15.07 5.37 5.37 Total: -1.00 -33.21 356.22 -8.61 -41.82 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -7.47 Total: -2.38 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 0.63 Total: -3.96 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: -1.33 Total: -42.96 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.80 Total: -15.15 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.21 -8.61 -41.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590167477.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.061 kcal (2) G-P(sol) polarization free energy of solvation -33.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds