Wall clock time and date at job start Tue Mar 31 2020 03:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46928 * 2 1 4 4 C 1.53001 * 109.46883 * 119.99435 * 2 1 3 5 5 O 1.42900 * 109.47238 * 300.00009 * 4 2 1 6 6 N 1.46897 * 109.47334 * 239.99293 * 2 1 3 7 7 C 1.46959 * 110.99936 * 183.80015 * 6 2 1 8 8 C 1.53044 * 109.36119 * 176.81378 * 7 6 2 9 9 N 1.46957 * 109.36888 * 58.40384 * 8 7 6 10 10 C 1.46902 * 111.00490 * 176.80970 * 9 8 7 11 11 C 1.52998 * 109.47130 * 199.50218 * 10 9 8 12 12 O 1.42902 * 109.46800 * 64.64628 * 11 10 9 13 13 C 1.42905 * 113.99621 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46940 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00096 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00106 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99715 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00062 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46968 * 89.99992 * 18 16 14 20 20 H 1.48500 * 109.46697 * 209.99778 * 18 16 14 21 21 H 1.48493 * 109.47014 * 329.99751 * 18 16 14 22 22 C 1.46959 * 110.87770 * 300.67650 * 9 8 7 23 23 C 1.46958 * 110.99756 * 60.00344 * 6 2 1 24 24 H 1.09002 * 109.46974 * 300.00336 * 1 2 3 25 25 H 1.08994 * 109.46602 * 60.00488 * 1 2 3 26 26 H 1.08998 * 109.46962 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46915 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.46670 * 299.99373 * 3 2 1 29 29 H 1.08998 * 109.47878 * 59.99648 * 3 2 1 30 30 H 1.09001 * 109.46962 * 180.02562 * 4 2 1 31 31 H 1.08998 * 109.47258 * 60.00259 * 4 2 1 32 32 H 0.96699 * 114.00220 * 179.97438 * 5 4 2 33 33 H 1.08999 * 109.48465 * 296.77860 * 7 6 2 34 34 H 1.08995 * 109.48746 * 56.84228 * 7 6 2 35 35 H 1.08999 * 109.49014 * 298.43407 * 8 7 6 36 36 H 1.08999 * 109.48645 * 178.36885 * 8 7 6 37 37 H 1.08997 * 109.46843 * 319.50452 * 10 9 8 38 38 H 1.08997 * 109.47045 * 79.49951 * 10 9 8 39 39 H 1.09002 * 109.47104 * 184.64218 * 11 10 9 40 40 H 1.08999 * 109.47405 * 304.64624 * 11 10 9 41 41 H 1.09002 * 109.47000 * 299.99807 * 13 12 11 42 42 H 1.08994 * 109.47307 * 60.00295 * 13 12 11 43 43 H 0.96996 * 119.99603 * 180.02562 * 17 16 14 44 44 H 1.08994 * 109.48860 * 299.35693 * 22 9 8 45 45 H 1.09002 * 109.51037 * 179.29418 * 22 9 8 46 46 H 1.08999 * 109.48836 * 303.15366 * 23 6 2 47 47 H 1.08999 * 109.48990 * 63.21991 * 23 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 1.5637 -0.0474 2.4160 6 7 2.0198 -0.6926 -1.1993 7 6 3.4860 -0.7914 -1.1886 8 6 3.9499 -1.5867 -2.4112 9 7 3.4788 -0.9204 -3.6334 10 6 3.9685 -1.6130 -4.8328 11 6 3.8908 -0.6690 -6.0343 12 8 4.7809 0.4309 -5.8342 13 6 4.7855 1.3771 -6.9051 14 6 5.7544 2.4876 -6.5900 15 1 6.3112 2.4721 -5.6647 16 6 5.9299 3.5234 -7.4830 17 7 5.2522 3.5419 -8.6099 18 14 7.1303 4.9002 -7.0921 19 1 8.4743 4.5491 -7.6172 20 1 6.6638 6.1588 -7.7275 21 1 7.2070 5.0872 -5.6210 22 6 2.0126 -0.8216 -3.6441 23 6 1.5486 -0.0263 -2.4215 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9562 -0.8901 29 1 1.6767 1.9565 0.8899 30 1 3.1300 -0.7208 1.2496 31 1 1.6767 -1.7488 1.2494 32 1 1.8486 -0.4511 3.2473 33 1 3.9180 0.2088 -1.2200 34 1 3.8096 -1.2993 -0.2801 35 1 3.5397 -2.5955 -2.3658 36 1 5.0387 -1.6365 -2.4208 37 1 5.0028 -1.9200 -4.6782 38 1 3.3528 -2.4925 -5.0213 39 1 4.1758 -1.2072 -6.9383 40 1 2.8715 -0.2971 -6.1389 41 1 5.0893 0.8810 -7.8269 42 1 3.7850 1.7914 -7.0282 43 1 5.3760 4.2704 -9.2383 44 1 1.5805 -1.8218 -3.6127 45 1 1.6885 -0.3138 -4.5526 46 1 0.4598 0.0235 -2.4119 47 1 1.9588 0.9826 -2.4669 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590167477.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:58 Heat of formation + Delta-G solvation = -107.839422 kcal Electronic energy + Delta-G solvation = -23980.854205 eV Core-core repulsion = 20583.887770 eV Total energy + Delta-G solvation = -3396.966435 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 286.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.05159 -39.05235 -38.01657 -36.57959 -34.91676 -33.19423 -32.07781 -30.54207 -28.86898 -28.31165 -27.43118 -26.23332 -24.47382 -24.13906 -22.66215 -21.24230 -19.70731 -18.65718 -18.56092 -17.43993 -17.30693 -16.55123 -16.31580 -16.09675 -15.93501 -15.82661 -15.70502 -15.38218 -15.13251 -14.79822 -14.62237 -13.83870 -13.68112 -13.62836 -13.40521 -13.22443 -13.08872 -12.88475 -12.71628 -12.66640 -12.49854 -12.45375 -12.26045 -12.10932 -11.94962 -11.79354 -11.46602 -11.28927 -11.21397 -10.84942 -10.78263 -10.16683 -9.37909 -9.11209 -8.32045 -6.43931 1.38480 1.41688 1.53783 2.34663 2.65040 2.92471 3.01434 3.26686 3.48985 3.82650 3.88743 4.00919 4.08401 4.17459 4.18798 4.27750 4.34649 4.41099 4.43205 4.52815 4.53834 4.60899 4.66200 4.67737 4.76182 4.79612 4.83516 4.84871 4.90766 4.96217 4.98201 5.00322 5.01131 5.10491 5.19709 5.28582 5.37036 5.55361 5.97017 5.97697 6.01718 6.21901 6.23990 6.57868 6.87577 6.93204 7.28456 8.80450 Molecular weight = 286.20amu Principal moments of inertia in cm(-1) A = 0.018812 B = 0.003510 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.032022 B = 7976.049883 C = 8743.946037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.104 3.896 3 C -0.171 4.171 4 C 0.093 3.907 5 O -0.584 6.584 6 N -0.520 5.520 7 C 0.052 3.948 8 C 0.064 3.936 9 N -0.555 5.555 10 C 0.072 3.928 11 C 0.060 3.940 12 O -0.395 6.395 13 C 0.211 3.789 14 C -0.545 4.545 15 H 0.059 0.941 16 C 0.006 3.994 17 N -0.931 5.931 18 Si 0.982 3.018 19 H -0.266 1.266 20 H -0.273 1.273 21 H -0.267 1.267 22 C 0.062 3.938 23 C 0.059 3.941 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.398 0.602 33 H 0.027 0.973 34 H 0.100 0.900 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.046 0.954 40 H 0.034 0.966 41 H -0.016 1.016 42 H -0.020 1.020 43 H 0.271 0.729 44 H 0.052 0.948 45 H 0.066 0.934 46 H 0.094 0.906 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.462 -12.593 19.676 24.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.015 3.985 3 C -0.230 4.230 4 C 0.015 3.985 5 O -0.391 6.391 6 N -0.246 5.246 7 C -0.076 4.076 8 C -0.064 4.064 9 N -0.281 5.281 10 C -0.056 4.056 11 C -0.018 4.018 12 O -0.315 6.315 13 C 0.136 3.864 14 C -0.583 4.583 15 H 0.077 0.923 16 C -0.193 4.193 17 N -0.571 5.571 18 Si 0.805 3.195 19 H -0.191 1.191 20 H -0.198 1.198 21 H -0.191 1.191 22 C -0.066 4.066 23 C -0.069 4.069 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.248 0.752 33 H 0.045 0.955 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.001 0.999 42 H -0.003 1.003 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.113 0.887 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -8.655 -12.105 19.252 24.333 hybrid contribution 0.589 0.532 -0.347 0.866 sum -8.066 -11.573 18.905 23.588 Atomic orbital electron populations 1.21765 0.92580 1.02493 1.01843 1.21014 0.96528 0.91453 0.89524 1.22341 1.00792 0.97914 1.01962 1.22053 0.97202 0.94916 0.84311 1.86382 1.77852 1.58036 1.16877 1.62421 1.10007 1.50831 1.01315 1.22291 0.87613 0.99173 0.98553 1.22145 1.00081 0.95842 0.88338 1.61941 1.10467 1.53324 1.02338 1.22019 1.01293 0.93626 0.88617 1.22575 0.92938 0.88680 0.97588 1.87891 1.63424 1.35269 1.44914 1.19756 0.94659 0.86961 0.85057 1.21375 1.24393 1.06999 1.05504 0.92313 1.25962 0.98215 1.00777 0.94301 1.70074 1.42681 1.34015 1.10316 0.85196 0.78365 0.77214 0.78710 1.19079 1.19824 1.19106 1.22142 0.87196 0.99555 0.97740 1.22163 1.00551 0.95469 0.88745 0.91555 0.92796 0.91601 0.93398 0.93510 0.91358 0.93128 0.91995 0.75171 0.95477 0.88176 0.93124 0.90282 0.90200 0.90940 0.93565 0.94778 0.99875 1.00268 0.92065 0.93026 0.91557 0.88743 0.95648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 8.10 71.98 0.58 -1.81 16 2 C 0.10 2.08 0.54 3.53 0.00 2.08 16 3 C -0.17 -3.97 7.63 71.98 0.55 -3.42 16 4 C 0.09 1.48 5.56 71.98 0.40 1.88 16 5 O -0.58 -8.80 12.31 -148.98 -1.83 -10.63 16 6 N -0.52 -11.39 4.53 -846.20 -3.83 -15.22 16 7 C 0.05 1.16 4.83 86.31 0.42 1.58 16 8 C 0.06 1.53 5.57 86.31 0.48 2.01 16 9 N -0.56 -16.70 4.58 -895.73 -4.11 -20.81 16 10 C 0.07 2.13 5.39 86.30 0.46 2.60 16 11 C 0.06 2.29 6.13 71.98 0.44 2.73 16 12 O -0.40 -20.19 10.27 -148.98 -1.53 -21.72 16 13 C 0.21 12.34 5.69 71.24 0.41 12.74 16 14 C -0.55 -33.66 9.43 25.60 0.24 -33.41 16 15 H 0.06 3.62 7.81 -2.91 -0.02 3.59 16 16 C 0.01 0.34 5.46 84.65 0.46 0.80 16 17 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 18 Si 0.98 45.57 29.54 68.60 2.03 47.59 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 C 0.06 1.65 5.43 86.31 0.47 2.12 16 23 C 0.06 1.47 4.82 86.31 0.42 1.89 16 24 H 0.07 1.23 7.68 -2.39 -0.02 1.22 16 25 H 0.05 1.01 6.34 -2.39 -0.02 1.00 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 1.18 6.56 -2.38 -0.02 1.16 16 28 H 0.05 1.19 6.48 -2.38 -0.02 1.17 16 29 H 0.07 1.54 7.68 -2.39 -0.02 1.52 16 30 H 0.05 0.76 6.28 -2.39 -0.01 0.75 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.40 2.33 9.12 -74.06 -0.68 1.65 16 33 H 0.03 0.75 6.57 -2.39 -0.02 0.73 16 34 H 0.10 1.76 6.06 -2.39 -0.01 1.75 16 35 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.88 8.00 -2.39 -0.02 1.86 16 37 H 0.08 2.33 7.85 -2.39 -0.02 2.32 16 38 H 0.07 1.70 8.00 -2.39 -0.02 1.68 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.03 1.30 6.74 -2.39 -0.02 1.29 16 41 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 42 H -0.02 -1.26 8.14 -2.39 -0.02 -1.27 16 43 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 44 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.07 1.94 6.72 -2.39 -0.02 1.92 16 46 H 0.09 2.07 6.14 -2.39 -0.01 2.05 16 47 H 0.03 0.77 6.48 -2.39 -0.02 0.76 16 Total: -1.00 -71.76 356.22 -3.39 -75.14 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.27 Total: 10.88 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 5.33 Total: -8.22 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -7.65 Total: -93.04 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -3.36 Total: -32.36 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -71.76 -3.39 -75.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590167477.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.695 kcal (2) G-P(sol) polarization free energy of solvation -71.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds