Wall clock time and date at job start Tue Mar 31 2020 03:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 110.99856 * 2 1 4 4 C 1.50692 * 109.47357 * 66.04274 * 3 2 1 5 5 H 1.08000 * 120.00251 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00132 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99758 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00159 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46776 * 60.00713 * 8 6 4 10 10 H 1.48505 * 109.47020 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47224 * 300.00312 * 8 6 4 12 12 C 1.46893 * 111.00149 * 236.04164 * 2 1 3 13 13 C 1.52991 * 109.47255 * 199.85185 * 12 2 1 14 14 H 1.09002 * 109.47288 * 300.46474 * 13 12 2 15 15 O 1.42906 * 109.47243 * 60.46383 * 13 12 2 16 16 C 1.53008 * 109.47421 * 180.46362 * 13 12 2 17 17 N 1.46899 * 109.47228 * 180.02562 * 16 13 12 18 18 C 1.46901 * 110.99780 * 180.02562 * 17 16 13 19 19 C 1.53000 * 109.46822 * 179.97438 * 18 17 16 20 20 H 1.09005 * 109.52107 * 54.87574 * 19 18 17 21 21 C 1.53175 * 109.51963 * 174.99742 * 19 18 17 22 22 C 1.53184 * 109.03486 * 176.88815 * 21 19 18 23 23 C 1.53090 * 109.21529 * 302.98721 * 22 21 19 24 24 O 1.43040 * 109.34299 * 57.58023 * 23 22 21 25 25 C 1.42906 * 114.12862 * 298.88121 * 24 23 22 26 26 H 1.09001 * 109.47178 * 188.77848 * 1 2 3 27 27 H 1.08998 * 109.47269 * 308.77831 * 1 2 3 28 28 H 1.08997 * 109.46985 * 68.77794 * 1 2 3 29 29 H 1.09003 * 109.46789 * 186.04592 * 3 2 1 30 30 H 1.08997 * 109.46928 * 306.03997 * 3 2 1 31 31 H 0.97002 * 119.99944 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47223 * 79.84987 * 12 2 1 33 33 H 1.08997 * 109.47249 * 319.85563 * 12 2 1 34 34 H 0.96703 * 113.99835 * 59.99731 * 15 13 12 35 35 H 1.08994 * 109.46972 * 59.99943 * 16 13 12 36 36 H 1.09004 * 109.46718 * 299.99835 * 16 13 12 37 37 H 1.00907 * 110.99815 * 303.94929 * 17 16 13 38 38 H 1.09004 * 109.47016 * 59.99711 * 18 17 16 39 39 H 1.08998 * 109.47026 * 299.99743 * 18 17 16 40 40 H 1.09007 * 109.54282 * 57.02537 * 21 19 18 41 41 H 1.09001 * 109.54821 * 296.75542 * 21 19 18 42 42 H 1.08994 * 109.52004 * 62.93161 * 22 21 19 43 43 H 1.09008 * 109.51700 * 183.05299 * 22 21 19 44 44 H 1.09000 * 109.48314 * 177.62358 * 23 22 21 45 45 H 1.08995 * 109.48300 * 297.66046 * 23 22 21 46 46 H 1.08996 * 109.47785 * 301.17253 * 25 24 23 47 47 H 1.08997 * 109.48597 * 181.14925 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5114 2.0487 6 6 2.0276 3.3492 1.5288 7 7 2.7128 4.0016 0.6152 8 14 1.5825 4.1871 3.1379 9 1 2.1733 3.4296 4.2703 10 1 2.1148 5.5735 3.1379 11 1 0.1052 4.2246 3.2844 12 6 1.9955 -0.7660 -1.1375 13 6 3.4448 -1.1667 -0.8555 14 1 4.0463 -0.2706 -0.7026 15 8 3.4945 -1.9797 0.3187 16 6 3.9969 -1.9547 -2.0452 17 7 5.3884 -2.3399 -1.7741 18 6 5.9527 -3.0994 -2.8978 19 6 7.3997 -3.4813 -2.5795 20 1 7.4348 -4.0163 -1.6303 21 6 7.9491 -4.3781 -3.6931 22 6 9.4206 -4.6900 -3.4032 23 6 10.1987 -3.3775 -3.2789 24 8 9.6160 -2.5771 -2.2464 25 6 8.2546 -2.2148 -2.4864 26 1 -0.3633 -1.0156 0.1568 27 1 -0.3634 0.6436 0.8011 28 1 -0.3633 0.3720 -0.9580 29 1 3.0797 1.3444 -0.1082 30 1 1.5611 1.9273 -0.8310 31 1 2.9874 4.9177 0.7771 32 1 1.9566 -0.1527 -2.0377 33 1 1.3923 -1.6623 -1.2822 34 1 2.9802 -2.7961 0.2538 35 1 3.9591 -1.3345 -2.9407 36 1 3.3954 -2.8508 -2.1980 37 1 5.9535 -1.5304 -1.5651 38 1 5.9289 -2.4866 -3.7990 39 1 5.3647 -4.0031 -3.0572 40 1 7.8673 -3.8627 -4.6501 41 1 7.3795 -5.3069 -3.7278 42 1 9.4975 -5.2489 -2.4707 43 1 9.8346 -5.2831 -4.2187 44 1 11.2380 -3.5931 -3.0308 45 1 10.1551 -2.8380 -4.2249 46 1 8.1856 -1.6601 -3.4221 47 1 7.8942 -1.5924 -1.6674 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591727672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:54 Heat of formation + Delta-G solvation = -104.143788 kcal Electronic energy + Delta-G solvation = -23152.205120 eV Core-core repulsion = 19755.398940 eV Total energy + Delta-G solvation = -3396.806180 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 286.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.73955 -38.11183 -36.27638 -35.17837 -33.65199 -32.45584 -31.69237 -29.41691 -27.29948 -26.41628 -25.36341 -24.63868 -23.24668 -21.85290 -21.51363 -20.28688 -19.98258 -16.82584 -16.57277 -16.44440 -15.99092 -15.55510 -15.18339 -15.06857 -14.79049 -14.64431 -14.32432 -14.13497 -13.67334 -13.35502 -13.24903 -13.06145 -12.89309 -12.48779 -11.96651 -11.87435 -11.78097 -11.50031 -11.40747 -11.23925 -11.12809 -10.89024 -10.85463 -10.67872 -10.60346 -10.51688 -10.31895 -9.73511 -9.67648 -9.46464 -9.10176 -8.43541 -8.39023 -7.17446 -5.99280 -3.99595 3.37086 3.40617 3.44525 3.64006 3.92070 4.46128 4.47788 4.51008 4.60525 4.64510 4.84149 4.89721 4.98417 5.10515 5.15979 5.28950 5.29635 5.35290 5.36231 5.40132 5.45749 5.49205 5.60684 5.65638 5.71195 5.72823 5.75425 5.77632 5.88307 6.05318 6.10479 6.15714 6.33849 6.51393 6.74656 6.92675 6.97296 7.29481 7.30967 7.33687 7.83470 8.11603 8.20988 8.30490 8.59061 9.07411 9.64145 11.11871 Molecular weight = 286.20amu Principal moments of inertia in cm(-1) A = 0.020974 B = 0.002905 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.690710 B = 9636.045347 C =10561.477015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.530 5.530 3 C 0.193 3.807 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.026 3.974 13 C 0.119 3.881 14 H 0.099 0.901 15 O -0.530 6.530 16 C 0.027 3.973 17 N -0.679 5.679 18 C 0.066 3.934 19 C -0.121 4.121 20 H 0.091 0.909 21 C -0.117 4.117 22 C -0.155 4.155 23 C 0.058 3.942 24 O -0.380 6.380 25 C 0.063 3.937 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.007 0.993 29 H 0.030 0.970 30 H -0.013 1.013 31 H 0.261 0.739 32 H 0.030 0.970 33 H 0.060 0.940 34 H 0.361 0.639 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.343 0.657 38 H 0.027 0.973 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.092 0.908 45 H 0.048 0.952 46 H 0.047 0.953 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.358 -17.070 -11.867 22.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.255 5.255 3 C 0.068 3.932 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.104 4.104 13 C 0.058 3.942 14 H 0.117 0.883 15 O -0.332 6.332 16 C -0.103 4.103 17 N -0.311 5.311 18 C -0.064 4.064 19 C -0.140 4.140 20 H 0.109 0.891 21 C -0.155 4.155 22 C -0.193 4.193 23 C -0.019 4.019 24 O -0.298 6.298 25 C -0.014 4.014 26 H 0.063 0.937 27 H 0.095 0.905 28 H 0.025 0.975 29 H 0.048 0.952 30 H 0.005 0.995 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.205 0.795 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.162 0.838 38 H 0.045 0.955 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.110 0.890 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.907 -17.119 -10.737 22.506 hybrid contribution -0.918 1.156 -1.264 1.944 sum 8.989 -15.963 -12.001 21.901 Atomic orbital electron populations 1.22227 0.88901 0.99957 1.00005 1.62014 1.06483 1.17737 1.39222 1.19757 0.95417 0.81544 0.96500 1.21120 1.34658 0.96793 1.01692 0.91895 1.24986 0.95328 0.97369 0.96982 1.69946 1.38525 1.11484 1.34143 0.86554 0.78618 0.78279 0.83929 1.20065 1.21403 1.20348 1.22669 0.96104 0.98085 0.93517 1.21849 0.95057 0.93247 0.84031 0.88344 1.86686 1.73599 1.35642 1.37266 1.22724 0.90077 0.99497 0.97964 1.60396 1.02749 1.28515 1.39396 1.21936 0.94184 0.98381 0.91864 1.21821 0.94264 0.97463 1.00474 0.89070 1.21604 0.95721 0.99937 0.98195 1.22181 0.95965 0.98423 1.02737 1.22601 0.97243 0.90762 0.91270 1.87994 1.25959 1.70530 1.45352 1.22695 0.81542 0.95576 1.01618 0.93737 0.90456 0.97479 0.95193 0.99480 0.92937 0.95200 0.92194 0.79455 0.94700 0.91006 0.83816 0.95484 0.90862 0.91956 0.91298 0.90888 0.90990 0.88995 0.93378 0.93493 0.88346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.37 60.07 0.56 1.31 16 2 N -0.53 -11.60 4.56 -244.39 -1.11 -12.72 16 3 C 0.19 5.10 4.55 -4.98 -0.02 5.07 16 4 C -0.50 -14.47 8.39 -34.44 -0.29 -14.76 16 5 H 0.06 1.80 7.17 -52.49 -0.38 1.42 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 8 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.03 0.45 4.66 -3.83 -0.02 0.44 16 13 C 0.12 1.94 3.24 -26.73 -0.09 1.85 16 14 H 0.10 1.90 6.78 -51.93 -0.35 1.55 16 15 O -0.53 -9.25 13.08 -35.23 -0.46 -9.71 16 16 C 0.03 0.34 5.35 -3.82 -0.02 0.32 16 17 N -0.68 -8.18 6.37 -113.77 -0.72 -8.90 16 18 C 0.07 0.64 5.15 -3.82 -0.02 0.62 16 19 C -0.12 -1.13 2.60 -90.48 -0.23 -1.36 16 20 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 21 C -0.12 -0.88 5.31 -26.55 -0.14 -1.02 16 22 C -0.16 -1.11 6.13 -26.59 -0.16 -1.28 16 23 C 0.06 0.48 6.86 37.20 0.26 0.73 16 24 O -0.38 -4.33 10.77 -35.23 -0.38 -4.71 16 25 C 0.06 0.64 5.85 37.20 0.22 0.86 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 1.65 6.67 -51.93 -0.35 1.30 16 28 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 29 H 0.03 0.84 6.63 -51.93 -0.34 0.50 16 30 H -0.01 -0.35 8.12 -51.93 -0.42 -0.78 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.03 0.53 8.00 -51.93 -0.42 0.11 16 33 H 0.06 0.89 7.94 -51.93 -0.41 0.48 16 34 H 0.36 4.95 9.05 45.56 0.41 5.36 16 35 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.34 4.26 7.06 -39.29 -0.28 3.99 16 38 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.10 1.06 6.80 -51.93 -0.35 0.71 16 LS Contribution 368.30 15.07 5.55 5.55 Total: -1.00 -32.13 368.30 -9.41 -41.54 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -7.94 Total: 4.00 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -0.06 Total: -5.75 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -1.10 Total: -47.98 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.84 Total: -14.42 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.13 -9.41 -41.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591727672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.604 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds