Wall clock time and date at job start Tue Mar 31 2020 03:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 110.99856 * 2 1 4 4 C 1.50692 * 109.47357 * 66.04274 * 3 2 1 5 5 H 1.08000 * 120.00251 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00132 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99758 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00159 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46776 * 60.00713 * 8 6 4 10 10 H 1.48505 * 109.47020 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47224 * 300.00312 * 8 6 4 12 12 C 1.46893 * 111.00149 * 236.04164 * 2 1 3 13 13 C 1.52991 * 109.47255 * 199.85185 * 12 2 1 14 14 H 1.09002 * 109.47288 * 300.46474 * 13 12 2 15 15 O 1.42906 * 109.47243 * 60.46383 * 13 12 2 16 16 C 1.53008 * 109.47421 * 180.46362 * 13 12 2 17 17 N 1.46899 * 109.47228 * 180.02562 * 16 13 12 18 18 C 1.46901 * 110.99780 * 180.02562 * 17 16 13 19 19 C 1.53000 * 109.46822 * 179.97438 * 18 17 16 20 20 H 1.09005 * 109.52107 * 54.87574 * 19 18 17 21 21 C 1.53175 * 109.51963 * 174.99742 * 19 18 17 22 22 C 1.53184 * 109.03486 * 176.88815 * 21 19 18 23 23 C 1.53090 * 109.21529 * 302.98721 * 22 21 19 24 24 O 1.43040 * 109.34299 * 57.58023 * 23 22 21 25 25 C 1.42906 * 114.12862 * 298.88121 * 24 23 22 26 26 H 1.09001 * 109.47178 * 188.77848 * 1 2 3 27 27 H 1.08998 * 109.47269 * 308.77831 * 1 2 3 28 28 H 1.08997 * 109.46985 * 68.77794 * 1 2 3 29 29 H 1.09003 * 109.46789 * 186.04592 * 3 2 1 30 30 H 1.08997 * 109.46928 * 306.03997 * 3 2 1 31 31 H 0.97002 * 119.99944 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47223 * 79.84987 * 12 2 1 33 33 H 1.08997 * 109.47249 * 319.85563 * 12 2 1 34 34 H 0.96703 * 113.99835 * 59.99731 * 15 13 12 35 35 H 1.08994 * 109.46972 * 59.99943 * 16 13 12 36 36 H 1.09004 * 109.46718 * 299.99835 * 16 13 12 37 37 H 1.00907 * 110.99815 * 303.94929 * 17 16 13 38 38 H 1.09004 * 109.47016 * 59.99711 * 18 17 16 39 39 H 1.08998 * 109.47026 * 299.99743 * 18 17 16 40 40 H 1.09007 * 109.54282 * 57.02537 * 21 19 18 41 41 H 1.09001 * 109.54821 * 296.75542 * 21 19 18 42 42 H 1.08994 * 109.52004 * 62.93161 * 22 21 19 43 43 H 1.09008 * 109.51700 * 183.05299 * 22 21 19 44 44 H 1.09000 * 109.48314 * 177.62358 * 23 22 21 45 45 H 1.08995 * 109.48300 * 297.66046 * 23 22 21 46 46 H 1.08996 * 109.47785 * 301.17253 * 25 24 23 47 47 H 1.08997 * 109.48597 * 181.14925 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5114 2.0487 6 6 2.0276 3.3492 1.5288 7 7 2.7128 4.0016 0.6152 8 14 1.5825 4.1871 3.1379 9 1 2.1733 3.4296 4.2703 10 1 2.1148 5.5735 3.1379 11 1 0.1052 4.2246 3.2844 12 6 1.9955 -0.7660 -1.1375 13 6 3.4448 -1.1667 -0.8555 14 1 4.0463 -0.2706 -0.7026 15 8 3.4945 -1.9797 0.3187 16 6 3.9969 -1.9547 -2.0452 17 7 5.3884 -2.3399 -1.7741 18 6 5.9527 -3.0994 -2.8978 19 6 7.3997 -3.4813 -2.5795 20 1 7.4348 -4.0163 -1.6303 21 6 7.9491 -4.3781 -3.6931 22 6 9.4206 -4.6900 -3.4032 23 6 10.1987 -3.3775 -3.2789 24 8 9.6160 -2.5771 -2.2464 25 6 8.2546 -2.2148 -2.4864 26 1 -0.3633 -1.0156 0.1568 27 1 -0.3634 0.6436 0.8011 28 1 -0.3633 0.3720 -0.9580 29 1 3.0797 1.3444 -0.1082 30 1 1.5611 1.9273 -0.8310 31 1 2.9874 4.9177 0.7771 32 1 1.9566 -0.1527 -2.0377 33 1 1.3923 -1.6623 -1.2822 34 1 2.9802 -2.7961 0.2538 35 1 3.9591 -1.3345 -2.9407 36 1 3.3954 -2.8508 -2.1980 37 1 5.9535 -1.5304 -1.5651 38 1 5.9289 -2.4866 -3.7990 39 1 5.3647 -4.0031 -3.0572 40 1 7.8673 -3.8627 -4.6501 41 1 7.3795 -5.3069 -3.7278 42 1 9.4975 -5.2489 -2.4707 43 1 9.8346 -5.2831 -4.2187 44 1 11.2380 -3.5931 -3.0308 45 1 10.1551 -2.8380 -4.2249 46 1 8.1856 -1.6601 -3.4221 47 1 7.8942 -1.5924 -1.6674 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591727672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:53 Heat of formation + Delta-G solvation = -130.327470 kcal Electronic energy + Delta-G solvation = -23153.340530 eV Core-core repulsion = 19755.398940 eV Total energy + Delta-G solvation = -3397.941590 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 286.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.48827 -39.46163 -37.54881 -36.48030 -34.59996 -34.44921 -32.52874 -30.70515 -29.29942 -27.54210 -26.15107 -25.92293 -24.80188 -22.85154 -22.61368 -21.65727 -20.97533 -18.59988 -17.82795 -17.29577 -17.05396 -16.82569 -16.63873 -16.26565 -15.91289 -15.84202 -15.53971 -15.19553 -15.07960 -14.73800 -14.34391 -14.10037 -13.95067 -13.71670 -13.54780 -13.17728 -12.94497 -12.83501 -12.58658 -12.54963 -12.50692 -12.30401 -12.13385 -12.12686 -11.97045 -11.60264 -11.49886 -11.32728 -11.22124 -10.64416 -10.60141 -10.40266 -9.36260 -8.93749 -8.20650 -6.29890 1.39862 1.43896 1.51449 2.40374 2.91995 2.92790 3.11939 3.43037 3.74449 3.78540 3.84742 3.93195 3.96809 4.03604 4.20347 4.24389 4.34999 4.37826 4.48076 4.50848 4.56371 4.59235 4.61602 4.70468 4.76040 4.76851 4.78366 4.80899 4.97988 5.06314 5.08340 5.11198 5.12756 5.21916 5.24269 5.30032 5.41411 5.64761 6.02839 6.08098 6.24526 6.31485 6.35926 6.65813 6.85775 7.15420 7.39339 8.90353 Molecular weight = 286.20amu Principal moments of inertia in cm(-1) A = 0.020974 B = 0.002905 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.690710 B = 9636.045347 C =10561.477015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.543 5.543 3 C 0.210 3.790 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.000 4.000 7 N -0.935 5.935 8 Si 0.968 3.032 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.265 1.265 12 C 0.027 3.973 13 C 0.125 3.875 14 H 0.057 0.943 15 O -0.552 6.552 16 C 0.042 3.958 17 N -0.691 5.691 18 C 0.070 3.930 19 C -0.114 4.114 20 H 0.073 0.927 21 C -0.114 4.114 22 C -0.152 4.152 23 C 0.050 3.950 24 O -0.407 6.407 25 C 0.061 3.939 26 H 0.081 0.919 27 H 0.054 0.946 28 H 0.012 0.988 29 H 0.003 0.997 30 H -0.041 1.041 31 H 0.264 0.736 32 H 0.027 0.973 33 H 0.097 0.903 34 H 0.378 0.622 35 H 0.040 0.960 36 H 0.095 0.905 37 H 0.336 0.664 38 H 0.034 0.966 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.806 -18.806 -12.439 24.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.267 5.267 3 C 0.083 3.917 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.576 5.576 8 Si 0.793 3.207 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.190 1.190 12 C -0.102 4.102 13 C 0.065 3.935 14 H 0.075 0.925 15 O -0.357 6.357 16 C -0.088 4.088 17 N -0.322 5.322 18 C -0.058 4.058 19 C -0.133 4.133 20 H 0.091 0.909 21 C -0.152 4.152 22 C -0.190 4.190 23 C -0.027 4.027 24 O -0.327 6.327 25 C -0.016 4.016 26 H 0.100 0.900 27 H 0.073 0.927 28 H 0.031 0.969 29 H 0.021 0.979 30 H -0.024 1.024 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.115 0.885 34 H 0.225 0.775 35 H 0.058 0.942 36 H 0.113 0.887 37 H 0.155 0.845 38 H 0.053 0.947 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.112 0.888 44 H 0.121 0.879 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.340 -18.894 -11.323 23.925 hybrid contribution -0.716 1.638 -1.111 2.105 sum 8.624 -17.255 -12.435 22.951 Atomic orbital electron populations 1.22246 0.87459 1.01757 0.99450 1.61927 1.07922 1.15062 1.41813 1.19368 0.93661 0.83952 0.94674 1.21452 1.34774 0.97449 1.02488 0.92124 1.25917 0.95045 0.98093 1.00704 1.70073 1.39409 1.11887 1.36211 0.85454 0.78911 0.77157 0.79217 1.19566 1.20714 1.19030 1.22789 0.97139 0.98614 0.91699 1.21655 0.94016 0.92491 0.85344 0.92476 1.86639 1.74245 1.36705 1.38094 1.22528 0.90556 0.99818 0.95915 1.60418 1.02569 1.28411 1.40801 1.21960 0.94284 0.98423 0.91175 1.21722 0.94020 0.97098 1.00447 0.90887 1.21607 0.95960 0.99979 0.97623 1.22165 0.95694 0.97924 1.03180 1.22832 0.97850 0.91043 0.90925 1.87951 1.26431 1.71332 1.46944 1.22682 0.81533 0.96058 1.01314 0.90006 0.92723 0.96943 0.97922 1.02357 0.92717 0.95500 0.88476 0.77473 0.94220 0.88709 0.84538 0.94742 0.89792 0.91090 0.90240 0.91702 0.88818 0.87930 0.92498 0.92798 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.49 9.37 127.69 1.20 2.69 16 2 N -0.54 -23.77 4.56 -927.11 -4.22 -27.99 16 3 C 0.21 11.50 4.55 85.55 0.39 11.89 16 4 C -0.52 -30.71 8.39 25.60 0.21 -30.50 16 5 H 0.06 3.51 7.17 -2.91 -0.02 3.49 16 6 C 0.00 0.01 5.46 84.66 0.46 0.47 16 7 N -0.94 -57.58 13.29 21.45 0.28 -57.29 16 8 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 9 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 C 0.03 0.90 4.66 86.30 0.40 1.30 16 13 C 0.13 4.10 3.24 30.59 0.10 4.20 16 14 H 0.06 2.34 6.78 -2.39 -0.02 2.32 16 15 O -0.55 -18.98 13.08 -148.98 -1.95 -20.93 16 16 C 0.04 0.99 5.35 86.31 0.46 1.45 16 17 N -0.69 -16.22 6.37 -513.87 -3.27 -19.50 16 18 C 0.07 1.26 5.15 86.30 0.44 1.70 16 19 C -0.11 -2.02 2.60 -10.71 -0.03 -2.05 16 20 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 21 C -0.11 -1.49 5.31 30.71 0.16 -1.32 16 22 C -0.15 -1.91 6.13 30.69 0.19 -1.72 16 23 C 0.05 0.76 6.86 72.01 0.49 1.25 16 24 O -0.41 -9.31 10.77 -148.98 -1.60 -10.91 16 25 C 0.06 1.25 5.85 72.01 0.42 1.67 16 26 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.05 2.32 6.67 -2.39 -0.02 2.30 16 28 H 0.01 0.45 8.13 -2.39 -0.02 0.43 16 29 H 0.00 0.16 6.63 -2.39 -0.02 0.15 16 30 H -0.04 -2.43 8.12 -2.39 -0.02 -2.45 16 31 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 32 H 0.03 0.93 8.00 -2.39 -0.02 0.92 16 33 H 0.10 2.57 7.94 -2.39 -0.02 2.55 16 34 H 0.38 9.67 9.05 -74.06 -0.67 9.00 16 35 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.34 8.63 7.06 -89.69 -0.63 7.99 16 38 H 0.03 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.08 1.91 6.80 -2.39 -0.02 1.89 16 Total: -1.00 -70.81 368.30 -4.20 -75.01 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -0.37 Total: 22.98 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 4.91 Total: -8.96 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -7.21 Total: -104.78 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -3.55 Total: -31.84 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -70.81 -4.20 -75.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591727672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.317 kcal (2) G-P(sol) polarization free energy of solvation -70.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds