Wall clock time and date at job start Tue Mar 31 2020 02:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42895 * 114.00494 * 2 1 4 4 C 1.52997 * 109.47629 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47140 * 54.99848 * 4 3 2 6 6 C 1.53006 * 109.47164 * 294.99900 * 4 3 2 7 7 C 1.52999 * 109.47269 * 175.00396 * 4 3 2 8 8 N 1.46500 * 109.47177 * 185.00061 * 7 4 3 9 9 C 1.34778 * 120.00010 * 179.97438 * 8 7 4 10 10 O 1.21583 * 120.00292 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99887 * 179.97438 * 9 8 7 12 12 C 1.47021 * 125.65088 * 359.69208 * 11 9 8 13 13 C 1.54335 * 107.26895 * 178.85032 * 12 11 9 14 14 C 1.55159 * 103.01755 * 338.14052 * 13 12 11 15 15 O 1.42907 * 111.00142 * 277.23047 * 14 13 12 16 16 C 1.50694 * 111.03735 * 153.39688 * 14 13 12 17 17 H 1.08009 * 119.99936 * 6.33124 * 16 14 13 18 18 C 1.37875 * 120.00344 * 186.32761 * 16 14 13 19 19 N 1.31521 * 119.99836 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00186 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47269 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46847 * 120.00113 * 20 18 16 23 23 H 1.48499 * 109.47025 * 239.99935 * 20 18 16 24 24 C 1.47424 * 125.64877 * 179.97438 * 11 9 8 25 25 H 1.09004 * 109.47298 * 299.99709 * 1 2 3 26 26 H 1.09002 * 109.47081 * 60.00017 * 1 2 3 27 27 H 1.09004 * 109.47111 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47049 * 59.99451 * 3 2 1 29 29 H 1.09001 * 109.47302 * 300.00314 * 3 2 1 30 30 H 1.09001 * 109.47002 * 59.99738 * 6 4 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 6 4 3 32 32 H 1.09000 * 109.47050 * 300.00004 * 6 4 3 33 33 H 1.09000 * 109.46738 * 304.99766 * 7 4 3 34 34 H 1.08994 * 109.47465 * 64.99853 * 7 4 3 35 35 H 0.97003 * 120.00376 * 359.97438 * 8 7 4 36 36 H 1.08997 * 109.87976 * 298.39531 * 12 11 9 37 37 H 1.09007 * 109.87976 * 59.55438 * 12 11 9 38 38 H 1.08996 * 110.84885 * 219.67423 * 13 12 11 39 39 H 1.08998 * 110.51393 * 96.44849 * 13 12 11 40 40 H 0.96702 * 113.99555 * 173.65133 * 15 14 13 41 41 H 0.96995 * 120.00278 * 180.02562 * 19 18 16 42 42 H 1.09000 * 110.36827 * 322.93963 * 24 11 9 43 43 H 1.09009 * 110.36156 * 85.14406 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8508 0.5684 -0.8427 6 6 3.9963 0.5363 1.3065 7 6 4.1573 2.5768 -0.1263 8 7 5.6120 2.4528 -0.2470 9 6 6.3746 3.5573 -0.3707 10 8 5.8551 4.6565 -0.3825 11 7 7.7129 3.4432 -0.4812 12 6 8.4689 2.1822 -0.4750 13 6 9.9591 2.5406 -0.6557 14 6 9.9037 3.9453 -1.3123 15 8 9.7072 3.8433 -2.7241 16 6 11.1461 4.7384 -0.9987 17 1 11.9672 4.2713 -0.4750 18 6 11.2349 6.0603 -1.3804 19 7 10.2349 6.6292 -2.0178 20 14 12.7747 7.0435 -0.9911 21 1 13.7453 6.1795 -0.2724 22 1 13.3853 7.5281 -2.2551 23 1 12.4177 8.2046 -0.1369 24 6 8.6619 4.5625 -0.6224 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.5532 -0.4556 1.3960 31 1 5.0828 0.4507 1.3062 32 1 3.6810 1.1525 2.1485 33 1 3.7603 3.0735 -1.0116 34 1 3.9150 3.1643 0.7593 35 1 6.0265 1.5759 -0.2379 36 1 8.3220 1.6666 0.4740 37 1 8.1394 1.5485 -1.2985 38 1 10.4528 1.8262 -1.3144 39 1 10.4609 2.5862 0.3109 40 1 9.5691 4.6932 -3.1643 41 1 10.2974 7.5591 -2.2867 42 1 8.2328 5.3474 -1.2452 43 1 8.9285 4.9597 0.3571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591964853.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:47 Heat of formation + Delta-G solvation = -131.417227 kcal Electronic energy + Delta-G solvation = -23345.116156 eV Core-core repulsion = 19811.294216 eV Total energy + Delta-G solvation = -3533.821940 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.70842 -38.51757 -37.41238 -35.74733 -34.19197 -32.53201 -32.20415 -29.99885 -27.82665 -27.59961 -26.74727 -25.44620 -24.32600 -22.43600 -20.64945 -19.64268 -19.39576 -17.58966 -17.01038 -16.79860 -16.28994 -15.65661 -15.42142 -15.19883 -14.84159 -14.54887 -14.40806 -13.93860 -13.51229 -13.15359 -12.99409 -12.81449 -12.70418 -12.44322 -12.03642 -11.84946 -11.63992 -11.45078 -11.22005 -11.21174 -11.03195 -10.91281 -10.78763 -10.57218 -10.44422 -10.16407 -9.95552 -9.59687 -9.34054 -8.79832 -8.67689 -8.32585 -7.65373 -6.25178 -4.34914 3.02900 3.21679 3.30314 3.33596 3.59741 3.78566 4.27896 4.50324 4.61067 4.71958 4.80593 5.01924 5.02474 5.03831 5.17065 5.32835 5.34499 5.40924 5.43449 5.63293 5.66982 5.72459 5.79990 5.82587 6.00979 6.04458 6.12650 6.15719 6.53635 6.73032 6.76372 6.87244 6.91426 7.00108 7.26402 7.35720 7.67963 7.77006 8.06228 8.56870 8.69905 9.16833 9.32677 9.40828 10.81839 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.041347 B = 0.003068 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.039206 B = 9125.030131 C = 9382.035420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.069 3.931 4 C -0.102 4.102 5 H 0.085 0.915 6 C -0.143 4.143 7 C 0.148 3.852 8 N -0.750 5.750 9 C 0.716 3.284 10 O -0.598 6.598 11 N -0.628 5.628 12 C 0.105 3.895 13 C -0.116 4.116 14 C 0.248 3.752 15 O -0.583 6.583 16 C -0.537 4.537 17 H 0.067 0.933 18 C 0.070 3.930 19 N -0.891 5.891 20 Si 0.903 3.097 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.114 3.886 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.393 0.607 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.381 0.619 41 H 0.269 0.731 42 H 0.085 0.915 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.795 -12.069 4.640 18.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.008 4.008 4 C -0.121 4.121 5 H 0.104 0.896 6 C -0.201 4.201 7 C 0.023 3.977 8 N -0.407 5.407 9 C 0.418 3.582 10 O -0.477 6.477 11 N -0.365 5.365 12 C -0.018 4.018 13 C -0.154 4.154 14 C 0.207 3.793 15 O -0.391 6.391 16 C -0.575 4.575 17 H 0.085 0.915 18 C -0.133 4.133 19 N -0.530 5.530 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.008 4.008 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.227 0.773 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.231 0.769 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.132 -11.857 4.691 19.034 hybrid contribution 0.615 1.024 0.096 1.199 sum -13.517 -10.833 4.787 17.971 Atomic orbital electron populations 1.22735 0.81018 1.02688 1.00039 1.87852 1.19628 1.27935 1.95445 1.22449 0.93018 0.84651 1.00705 1.21324 0.93534 0.96909 1.00366 0.89618 1.21786 1.01158 1.01060 0.96071 1.20971 0.79563 0.95133 1.02069 1.45049 1.06455 1.08113 1.81101 1.15496 0.80448 0.84037 0.78208 1.90882 1.72133 1.25365 1.59296 1.47929 1.03568 1.09768 1.75246 1.21929 0.93976 0.86779 0.99160 1.22588 0.92807 0.99083 1.00890 1.19639 0.90907 0.89497 0.79252 1.86102 1.95047 1.36382 1.21593 1.21488 1.01713 0.95802 1.38498 0.91501 1.25090 0.96675 0.97629 0.93910 1.69734 1.30826 1.13656 1.38784 0.86356 0.82608 0.79774 0.78193 1.19608 1.20787 1.20798 1.23124 0.88729 0.88296 1.00677 0.94075 0.94041 0.89674 0.92839 0.92838 0.91774 0.92478 0.92597 0.91748 0.91692 0.77258 0.93164 0.92695 0.90785 0.90447 0.76931 0.92076 0.89659 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.84 10.24 -35.23 -0.36 -4.21 16 3 C 0.07 0.63 5.32 37.16 0.20 0.82 16 4 C -0.10 -1.02 2.66 -90.62 -0.24 -1.26 16 5 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 6 C -0.14 -1.35 8.96 37.16 0.33 -1.01 16 7 C 0.15 1.89 5.06 -4.04 -0.02 1.87 16 8 N -0.75 -11.40 5.24 -65.23 -0.34 -11.75 16 9 C 0.72 14.79 8.49 -86.92 -0.74 14.05 16 10 O -0.60 -14.70 16.60 5.29 0.09 -14.61 16 11 N -0.63 -13.17 3.33 -176.24 -0.59 -13.76 16 12 C 0.11 1.83 6.15 -3.06 -0.02 1.82 16 13 C -0.12 -2.28 6.13 -24.89 -0.15 -2.43 16 14 C 0.25 6.00 0.87 -89.64 -0.08 5.92 16 15 O -0.58 -14.88 13.16 -35.23 -0.46 -15.34 16 16 C -0.54 -13.95 8.27 -34.44 -0.28 -14.24 16 17 H 0.07 1.71 7.79 -52.48 -0.41 1.30 16 18 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 19 N -0.89 -23.95 10.69 55.43 0.59 -23.36 16 20 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C 0.11 2.78 5.38 -2.54 -0.01 2.76 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.59 7.82 -51.93 -0.41 0.19 16 31 H 0.06 0.53 7.18 -51.93 -0.37 0.16 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.39 5.07 6.64 -40.82 -0.27 4.80 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 40 H 0.38 10.02 7.56 45.56 0.34 10.36 16 41 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.09 2.35 7.33 -51.93 -0.38 1.97 16 43 H 0.06 1.43 8.03 -51.92 -0.42 1.01 16 LS Contribution 350.12 15.07 5.28 5.28 Total: -1.00 -30.89 350.12 -7.35 -38.25 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -6.54 Total: 12.74 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 0.00 Total: 11.37 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: -0.34 Total: -48.86 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.74 Total: -34.16 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.89 -7.35 -38.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591964853.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.170 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds