Wall clock time and date at job start Tue Mar 31 2020 02:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42895 * 114.00494 * 2 1 4 4 C 1.52997 * 109.47629 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47140 * 54.99848 * 4 3 2 6 6 C 1.53006 * 109.47164 * 294.99900 * 4 3 2 7 7 C 1.52999 * 109.47269 * 175.00396 * 4 3 2 8 8 N 1.46500 * 109.47177 * 185.00061 * 7 4 3 9 9 C 1.34778 * 120.00010 * 179.97438 * 8 7 4 10 10 O 1.21583 * 120.00292 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99887 * 179.97438 * 9 8 7 12 12 C 1.47021 * 125.65088 * 359.69208 * 11 9 8 13 13 C 1.54335 * 107.26895 * 178.85032 * 12 11 9 14 14 C 1.55159 * 103.01755 * 338.14052 * 13 12 11 15 15 O 1.42907 * 111.00142 * 277.23047 * 14 13 12 16 16 C 1.50694 * 111.03735 * 153.39688 * 14 13 12 17 17 H 1.08009 * 119.99936 * 6.33124 * 16 14 13 18 18 C 1.37875 * 120.00344 * 186.32761 * 16 14 13 19 19 N 1.31521 * 119.99836 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00186 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47269 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46847 * 120.00113 * 20 18 16 23 23 H 1.48499 * 109.47025 * 239.99935 * 20 18 16 24 24 C 1.47424 * 125.64877 * 179.97438 * 11 9 8 25 25 H 1.09004 * 109.47298 * 299.99709 * 1 2 3 26 26 H 1.09002 * 109.47081 * 60.00017 * 1 2 3 27 27 H 1.09004 * 109.47111 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47049 * 59.99451 * 3 2 1 29 29 H 1.09001 * 109.47302 * 300.00314 * 3 2 1 30 30 H 1.09001 * 109.47002 * 59.99738 * 6 4 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 6 4 3 32 32 H 1.09000 * 109.47050 * 300.00004 * 6 4 3 33 33 H 1.09000 * 109.46738 * 304.99766 * 7 4 3 34 34 H 1.08994 * 109.47465 * 64.99853 * 7 4 3 35 35 H 0.97003 * 120.00376 * 359.97438 * 8 7 4 36 36 H 1.08997 * 109.87976 * 298.39531 * 12 11 9 37 37 H 1.09007 * 109.87976 * 59.55438 * 12 11 9 38 38 H 1.08996 * 110.84885 * 219.67423 * 13 12 11 39 39 H 1.08998 * 110.51393 * 96.44849 * 13 12 11 40 40 H 0.96702 * 113.99555 * 173.65133 * 15 14 13 41 41 H 0.96995 * 120.00278 * 180.02562 * 19 18 16 42 42 H 1.09000 * 110.36827 * 322.93963 * 24 11 9 43 43 H 1.09009 * 110.36156 * 85.14406 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8508 0.5684 -0.8427 6 6 3.9963 0.5363 1.3065 7 6 4.1573 2.5768 -0.1263 8 7 5.6120 2.4528 -0.2470 9 6 6.3746 3.5573 -0.3707 10 8 5.8551 4.6565 -0.3825 11 7 7.7129 3.4432 -0.4812 12 6 8.4689 2.1822 -0.4750 13 6 9.9591 2.5406 -0.6557 14 6 9.9037 3.9453 -1.3123 15 8 9.7072 3.8433 -2.7241 16 6 11.1461 4.7384 -0.9987 17 1 11.9672 4.2713 -0.4750 18 6 11.2349 6.0603 -1.3804 19 7 10.2349 6.6292 -2.0178 20 14 12.7747 7.0435 -0.9911 21 1 13.7453 6.1795 -0.2724 22 1 13.3853 7.5281 -2.2551 23 1 12.4177 8.2046 -0.1369 24 6 8.6619 4.5625 -0.6224 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.5532 -0.4556 1.3960 31 1 5.0828 0.4507 1.3062 32 1 3.6810 1.1525 2.1485 33 1 3.7603 3.0735 -1.0116 34 1 3.9150 3.1643 0.7593 35 1 6.0265 1.5759 -0.2379 36 1 8.3220 1.6666 0.4740 37 1 8.1394 1.5485 -1.2985 38 1 10.4528 1.8262 -1.3144 39 1 10.4609 2.5862 0.3109 40 1 9.5691 4.6932 -3.1643 41 1 10.2974 7.5591 -2.2867 42 1 8.2328 5.3474 -1.2452 43 1 8.9285 4.9597 0.3571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591964853.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:46 Heat of formation + Delta-G solvation = -154.993404 kcal Electronic energy + Delta-G solvation = -23346.138496 eV Core-core repulsion = 19811.294216 eV Total energy + Delta-G solvation = -3534.844280 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.27626 -39.46978 -38.91339 -36.87797 -36.02182 -34.21709 -33.75622 -31.63902 -29.55197 -28.25023 -27.87167 -26.78353 -25.60783 -23.99122 -21.62684 -21.41073 -20.86196 -19.24581 -18.78742 -17.74015 -17.10990 -17.07092 -16.81807 -16.71632 -16.25278 -15.85104 -15.64956 -15.37089 -14.84479 -14.70347 -14.56602 -14.04014 -13.73127 -13.62767 -13.50740 -13.31620 -13.16343 -12.85556 -12.52428 -12.44140 -12.32320 -12.19032 -12.08004 -12.07013 -12.01777 -11.68380 -11.32759 -11.17519 -10.66006 -10.60109 -10.31397 -10.18613 -9.31075 -8.23112 -6.40283 1.41545 1.44988 1.55858 1.66079 2.16303 2.39303 2.76850 3.03036 3.19796 3.81399 3.82953 3.84028 4.04345 4.11506 4.21051 4.36098 4.43358 4.45210 4.48910 4.58932 4.63149 4.65756 4.75667 4.78647 4.87970 4.89500 5.01720 5.08886 5.12168 5.19149 5.31803 5.36952 5.40014 5.48331 5.51212 5.77686 6.06763 6.19682 6.22377 6.67512 7.07437 7.29054 7.36456 7.58053 8.82202 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.041347 B = 0.003068 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.039206 B = 9125.030131 C = 9382.035420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.069 3.931 4 C -0.091 4.091 5 H 0.088 0.912 6 C -0.140 4.140 7 C 0.147 3.853 8 N -0.727 5.727 9 C 0.710 3.290 10 O -0.645 6.645 11 N -0.634 5.634 12 C 0.106 3.894 13 C -0.111 4.111 14 C 0.231 3.769 15 O -0.587 6.587 16 C -0.553 4.553 17 H 0.070 0.930 18 C 0.024 3.976 19 N -0.916 5.916 20 Si 0.965 3.035 21 H -0.263 1.263 22 H -0.281 1.281 23 H -0.283 1.283 24 C 0.128 3.872 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.409 0.591 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.372 0.628 41 H 0.268 0.732 42 H 0.043 0.957 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.912 -14.161 5.501 20.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.008 4.008 4 C -0.110 4.110 5 H 0.107 0.893 6 C -0.198 4.198 7 C 0.023 3.977 8 N -0.384 5.384 9 C 0.411 3.589 10 O -0.528 6.528 11 N -0.370 5.370 12 C -0.015 4.015 13 C -0.148 4.148 14 C 0.191 3.809 15 O -0.395 6.395 16 C -0.592 4.592 17 H 0.088 0.912 18 C -0.177 4.177 19 N -0.555 5.555 20 Si 0.790 3.210 21 H -0.187 1.187 22 H -0.207 1.207 23 H -0.209 1.209 24 C 0.004 3.996 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.245 0.755 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.221 0.779 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.260 -14.036 5.564 20.768 hybrid contribution 0.586 1.651 -0.176 1.761 sum -13.674 -12.385 5.388 19.220 Atomic orbital electron populations 1.22920 0.79553 1.03817 1.00779 1.87809 1.21273 1.28076 1.95597 1.22423 0.92324 0.84769 1.01306 1.21194 0.94092 0.94768 1.00907 0.89344 1.21764 1.01295 1.01159 0.95552 1.21099 0.78033 0.97106 1.01481 1.44867 1.07060 1.07241 1.79271 1.15728 0.80486 0.84573 0.78068 1.90844 1.73007 1.27627 1.61335 1.47867 1.03702 1.10068 1.75399 1.22129 0.91939 0.85396 1.02084 1.22596 0.94795 0.96307 1.01123 1.19881 0.90062 0.92377 0.78611 1.86094 1.95056 1.35772 1.22536 1.21824 1.02498 0.96361 1.38489 0.91229 1.25852 0.99259 0.98709 0.93855 1.69859 1.32354 1.13733 1.39547 0.85404 0.79450 0.78273 0.77870 1.18669 1.20661 1.20941 1.22651 0.89624 0.88541 0.98747 0.93213 0.93435 0.88435 0.92100 0.92501 0.91345 0.92233 0.92601 0.92630 0.92125 0.75458 0.89118 0.90891 0.89590 0.89257 0.77932 0.92246 0.93846 0.94301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.23 10.24 -148.98 -1.53 -8.76 16 3 C 0.07 1.13 5.32 71.98 0.38 1.51 16 4 C -0.09 -1.62 2.66 -10.79 -0.03 -1.65 16 5 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 6 C -0.14 -2.29 8.96 71.98 0.65 -1.65 16 7 C 0.15 3.59 5.06 86.38 0.44 4.03 16 8 N -0.73 -20.94 5.24 -478.55 -2.51 -23.45 16 9 C 0.71 29.09 8.49 179.05 1.52 30.61 16 10 O -0.65 -32.53 16.60 -3.98 -0.07 -32.59 16 11 N -0.63 -26.19 3.33 -829.77 -2.76 -28.95 16 12 C 0.11 3.41 6.15 86.73 0.53 3.95 16 13 C -0.11 -4.11 6.13 31.79 0.19 -3.92 16 14 C 0.23 11.19 0.87 -10.16 -0.01 11.18 16 15 O -0.59 -30.28 13.16 -148.98 -1.96 -32.24 16 16 C -0.55 -28.81 8.27 25.60 0.21 -28.59 16 17 H 0.07 3.50 7.79 -2.91 -0.02 3.47 16 18 C 0.02 1.27 5.29 84.65 0.45 1.71 16 19 N -0.92 -50.58 10.69 21.45 0.23 -50.35 16 20 Si 0.96 42.02 29.54 68.60 2.03 44.04 16 21 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 24 C 0.13 6.40 5.38 86.85 0.47 6.87 16 25 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.09 7.82 -2.39 -0.02 1.07 16 31 H 0.06 0.93 7.18 -2.39 -0.02 0.92 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.41 9.33 6.64 -92.71 -0.62 8.72 16 36 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 39 H 0.09 3.09 8.03 -2.39 -0.02 3.07 16 40 H 0.37 20.26 7.56 -74.06 -0.56 19.70 16 41 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 42 H 0.04 2.51 7.33 -2.39 -0.02 2.49 16 43 H 0.04 2.03 8.03 -2.38 -0.02 2.01 16 Total: -1.00 -68.11 350.12 -0.69 -68.80 By element: Atomic # 1 Polarization: 38.07 SS G_CDS: -0.17 Total: 37.89 kcal Atomic # 6 Polarization: 19.56 SS G_CDS: 6.05 Total: 25.61 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -5.04 Total: -102.75 kcal Atomic # 8 Polarization: -70.04 SS G_CDS: -3.55 Total: -73.59 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -68.11 -0.69 -68.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591964853.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.197 kcal (2) G-P(sol) polarization free energy of solvation -68.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds