Wall clock time and date at job start Tue Mar 31 2020 02:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00311 * 2 1 4 4 C 1.52998 * 109.47497 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47306 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.46992 * 180.02562 * 5 4 3 7 7 C 1.34777 * 119.99525 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00463 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99675 * 179.72583 * 7 6 5 10 10 N 1.46904 * 109.47192 * 180.28082 * 9 7 6 11 11 C 1.47442 * 111.00249 * 69.86951 * 10 9 7 12 12 C 1.54317 * 107.23050 * 123.25886 * 11 10 9 13 13 C 1.55142 * 103.01999 * 22.28722 * 12 11 10 14 14 O 1.42902 * 110.99103 * 82.47236 * 13 12 11 15 15 C 1.50706 * 110.98782 * 206.25355 * 13 12 11 16 16 H 1.07998 * 119.99760 * 118.54555 * 15 13 12 17 17 C 1.37874 * 120.00225 * 298.54158 * 15 13 12 18 18 N 1.31520 * 119.99963 * 0.02562 * 17 15 13 19 19 Si 1.86795 * 120.00159 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47140 * 90.00251 * 19 17 15 21 21 H 1.48500 * 109.46810 * 210.00213 * 19 17 15 22 22 H 1.48502 * 109.46862 * 329.99762 * 19 17 15 23 23 C 1.47839 * 111.00046 * 190.71824 * 10 9 7 24 24 H 1.09000 * 109.46809 * 60.00649 * 1 2 3 25 25 H 1.09005 * 109.47187 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47679 * 300.00300 * 1 2 3 27 27 H 1.08995 * 109.46810 * 59.99567 * 3 2 1 28 28 H 1.09001 * 109.46455 * 300.00019 * 3 2 1 29 29 H 1.09009 * 109.46771 * 59.99706 * 4 3 2 30 30 H 1.08993 * 109.47193 * 300.00180 * 4 3 2 31 31 H 1.08995 * 109.46838 * 59.99948 * 5 4 3 32 32 H 1.09001 * 109.46617 * 300.00283 * 5 4 3 33 33 H 0.97000 * 120.00580 * 0.02562 * 6 5 4 34 34 H 1.09009 * 109.47352 * 300.27556 * 9 7 6 35 35 H 1.08998 * 109.47585 * 60.27844 * 9 7 6 36 36 H 1.09001 * 109.88903 * 242.66419 * 11 10 9 37 37 H 1.08999 * 109.88858 * 3.85602 * 11 10 9 38 38 H 1.09001 * 110.70756 * 140.66830 * 12 11 10 39 39 H 1.08999 * 110.70626 * 263.90155 * 12 11 10 40 40 H 0.96697 * 113.99808 * 61.45587 * 14 13 12 41 41 H 0.96995 * 120.00035 * 179.97438 * 18 17 15 42 42 H 1.09001 * 110.37459 * 332.45990 * 23 10 9 43 43 H 1.09002 * 110.37701 * 94.80445 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1578 2.5824 0.0000 6 7 5.6182 2.4666 0.0000 7 6 6.3821 3.5770 -0.0010 8 8 5.8606 4.6720 -0.0015 9 6 7.8844 3.4580 0.0052 10 7 8.4819 4.8000 0.0095 11 6 8.2586 5.4738 1.3018 12 6 9.6439 5.8606 1.8610 13 6 10.5363 5.8930 0.5924 14 8 10.4045 7.1390 -0.0946 15 6 11.9775 5.6207 0.9392 16 1 12.4794 4.7595 0.5235 17 6 12.6551 6.4710 1.7870 18 7 12.0436 7.5195 2.2935 19 14 14.4415 6.1339 2.2162 20 1 15.3234 6.8127 1.2331 21 1 14.7291 6.6503 3.5785 22 1 14.6920 4.6707 2.1784 23 6 9.9374 4.7327 -0.2411 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6886 1.8463 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.8574 0.6435 -0.8892 30 1 3.8567 0.6439 0.8908 31 1 3.8358 3.1238 0.8895 32 1 3.8364 3.1227 -0.8905 33 1 6.0354 1.5909 0.0000 34 1 8.2023 2.9160 0.8960 35 1 8.2099 2.9182 -0.8840 36 1 7.6552 6.3694 1.1536 37 1 7.7564 4.7956 1.9917 38 1 9.6086 6.8427 2.3325 39 1 9.9999 5.1072 2.5636 40 1 10.6775 7.9064 0.4267 41 1 12.5202 8.1175 2.8902 42 1 10.3369 3.7767 0.0973 43 1 10.1472 4.8790 -1.3007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148044.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:12 Heat of formation + Delta-G solvation = -128.038941 kcal Electronic energy + Delta-G solvation = -22710.491721 eV Core-core repulsion = 19176.816274 eV Total energy + Delta-G solvation = -3533.675446 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.71776 -38.42309 -37.89805 -35.47256 -34.45362 -32.21176 -32.10166 -30.19284 -28.08355 -27.62700 -26.43497 -24.91241 -23.81580 -22.02536 -20.72248 -19.74727 -19.53966 -17.16624 -16.89970 -16.71396 -16.63993 -15.77749 -15.65456 -15.23273 -14.99807 -14.85572 -14.44687 -14.01417 -13.83844 -13.51582 -12.89489 -12.48619 -12.27019 -12.25625 -12.15660 -12.13764 -11.65788 -11.49960 -11.43653 -11.20858 -11.14432 -11.04048 -10.71837 -10.40677 -10.25579 -10.09593 -9.82069 -9.54798 -9.16422 -9.07912 -8.57521 -8.03323 -7.56187 -6.18636 -4.27295 2.87446 2.94126 3.23211 3.30324 3.32630 3.52268 4.30473 4.54031 4.60480 4.71745 4.75226 4.92355 4.96168 5.04705 5.07851 5.10280 5.16288 5.25762 5.38583 5.47829 5.56370 5.74079 5.75277 5.80933 5.96719 6.13649 6.22009 6.39148 6.55827 6.71325 6.71773 6.94248 7.13031 7.43900 7.45678 7.53370 7.66972 7.77034 7.85239 8.18630 8.43609 8.74909 9.41398 9.56966 10.88232 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.047756 B = 0.002507 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.172460 B =11165.578515 C =11322.398285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.064 3.936 4 C -0.130 4.130 5 C 0.125 3.875 6 N -0.741 5.741 7 C 0.514 3.486 8 O -0.514 6.514 9 C 0.032 3.968 10 N -0.511 5.511 11 C 0.055 3.945 12 C -0.146 4.146 13 C 0.252 3.748 14 O -0.578 6.578 15 C -0.536 4.536 16 H 0.061 0.939 17 C 0.071 3.929 18 N -0.893 5.893 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.059 3.941 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.399 0.601 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.030 0.970 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.377 0.623 41 H 0.266 0.734 42 H 0.048 0.952 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.225 -13.769 -2.221 22.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.013 4.013 4 C -0.168 4.168 5 C 0.001 3.999 6 N -0.396 5.396 7 C 0.300 3.700 8 O -0.387 6.387 9 C -0.100 4.100 10 N -0.235 5.235 11 C -0.072 4.072 12 C -0.186 4.186 13 C 0.212 3.788 14 O -0.385 6.385 15 C -0.575 4.575 16 H 0.079 0.921 17 C -0.132 4.132 18 N -0.532 5.532 19 Si 0.727 3.273 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.068 4.068 24 H 0.060 0.940 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.233 0.767 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.226 0.774 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.942 -13.058 -2.975 22.390 hybrid contribution 1.447 -0.557 1.473 2.139 sum -16.495 -13.616 -1.502 21.441 Atomic orbital electron populations 1.22751 0.80758 1.02838 1.00142 1.87854 1.19935 1.27975 1.95486 1.22396 0.93368 0.84763 1.00803 1.21677 0.93818 0.97195 1.04131 1.21083 0.80309 0.95974 1.02583 1.45980 1.06309 1.09356 1.77963 1.20840 0.89702 0.83905 0.75600 1.90705 1.74678 1.26435 1.46910 1.22140 0.91096 0.94250 1.02518 1.63373 1.13494 1.13710 1.32931 1.22780 0.98419 0.98185 0.87833 1.23305 0.93182 1.01971 1.00103 1.19514 0.91890 0.81565 0.85859 1.86152 1.89245 1.17324 1.45821 1.21532 0.96631 1.11053 1.28237 0.92096 1.25012 0.98534 0.94762 0.94867 1.69749 1.36878 1.14260 1.32353 0.86474 0.84565 0.78573 0.77647 1.20442 1.21156 1.19877 1.23042 0.84492 0.98307 1.00963 0.93956 0.89557 0.93948 0.92841 0.92820 0.90328 0.90348 0.91495 0.91423 0.76713 0.92229 0.88474 0.91143 0.95164 0.90361 0.92734 0.77409 0.92381 0.93405 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.46 10.70 -35.23 -0.38 -3.84 16 3 C 0.06 0.47 5.94 37.16 0.22 0.69 16 4 C -0.13 -0.96 5.70 -26.73 -0.15 -1.11 16 5 C 0.12 1.20 5.67 -4.04 -0.02 1.18 16 6 N -0.74 -8.02 5.56 -60.30 -0.33 -8.36 16 7 C 0.51 7.94 7.48 -10.98 -0.08 7.85 16 8 O -0.51 -10.21 15.54 5.55 0.09 -10.12 16 9 C 0.03 0.50 5.03 -4.97 -0.03 0.47 16 10 N -0.51 -10.48 4.85 -232.69 -1.13 -11.61 16 11 C 0.06 1.18 5.65 -2.84 -0.02 1.17 16 12 C -0.15 -3.49 5.37 -24.91 -0.13 -3.62 16 13 C 0.25 6.38 0.87 -89.63 -0.08 6.30 16 14 O -0.58 -15.61 13.16 -35.23 -0.46 -16.08 16 15 C -0.54 -14.37 8.27 -34.44 -0.28 -14.66 16 16 H 0.06 1.61 7.79 -52.49 -0.41 1.20 16 17 C 0.07 1.88 5.29 -17.82 -0.09 1.79 16 18 N -0.89 -24.08 10.75 55.43 0.60 -23.49 16 19 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 C 0.06 1.29 5.86 -2.30 -0.01 1.27 16 24 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.40 3.11 8.47 -40.82 -0.35 2.76 16 34 H 0.06 0.84 7.96 -51.92 -0.41 0.43 16 35 H 0.10 1.28 8.07 -51.93 -0.42 0.86 16 36 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 37 H 0.03 0.59 7.31 -51.93 -0.38 0.21 16 38 H 0.08 1.98 7.54 -51.93 -0.39 1.59 16 39 H 0.05 1.30 8.03 -51.93 -0.42 0.88 16 40 H 0.38 10.20 7.56 45.56 0.34 10.54 16 41 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 43 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 351.85 15.07 5.30 5.30 Total: -1.00 -32.07 351.85 -7.53 -39.60 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.62 Total: 10.33 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 0.43 Total: 2.64 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: -0.87 Total: -43.45 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.75 Total: -30.03 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.07 -7.53 -39.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148044.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.440 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds