Wall clock time and date at job start Tue Mar 31 2020 03:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 110.99998 * 2 1 4 4 C 1.50693 * 109.47349 * 66.04631 * 3 2 1 5 5 H 1.08001 * 120.00204 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00161 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00216 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99834 * 179.97438 * 6 4 3 9 9 H 1.48490 * 109.47505 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47097 * 120.00366 * 8 6 4 11 11 H 1.48502 * 109.46925 * 239.99400 * 8 6 4 12 12 C 1.46897 * 110.99950 * 236.04393 * 2 1 3 13 13 C 1.53001 * 109.47485 * 293.95179 * 12 2 1 14 14 H 1.09003 * 109.46548 * 59.99677 * 13 12 2 15 15 O 1.42898 * 109.47209 * 300.00164 * 13 12 2 16 16 C 1.52995 * 109.47271 * 179.97438 * 13 12 2 17 17 N 1.46906 * 109.46978 * 185.00310 * 16 13 12 18 18 C 1.46901 * 110.99793 * 180.02562 * 17 16 13 19 19 C 1.53000 * 109.46769 * 180.02562 * 18 17 16 20 20 C 1.52992 * 112.85191 * 50.33243 * 19 18 17 21 21 O 1.42904 * 109.47055 * 309.66440 * 20 19 18 22 22 C 1.53779 * 113.61407 * 279.13071 * 19 18 17 23 23 C 1.53953 * 87.02175 * 220.05144 * 22 19 18 24 24 C 1.53775 * 87.11168 * 25.36354 * 23 22 19 25 25 H 1.09002 * 109.47184 * 183.95292 * 1 2 3 26 26 H 1.09004 * 109.47058 * 303.95538 * 1 2 3 27 27 H 1.08995 * 109.47346 * 63.95772 * 1 2 3 28 28 H 1.08998 * 109.47267 * 186.04799 * 3 2 1 29 29 H 1.09000 * 109.46947 * 306.04101 * 3 2 1 30 30 H 0.96995 * 120.00160 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47032 * 173.95165 * 12 2 1 32 32 H 1.09001 * 109.47160 * 53.95777 * 12 2 1 33 33 H 0.96694 * 114.00116 * 300.00232 * 15 13 12 34 34 H 1.08995 * 109.46859 * 65.00602 * 16 13 12 35 35 H 1.09002 * 109.47639 * 305.00270 * 16 13 12 36 36 H 1.00898 * 110.99995 * 303.95410 * 17 16 13 37 37 H 1.09002 * 109.47401 * 59.99808 * 18 17 16 38 38 H 1.09001 * 109.46874 * 299.99821 * 18 17 16 39 39 H 1.09001 * 109.47594 * 69.66439 * 20 19 18 40 40 H 1.09001 * 109.47256 * 189.66851 * 20 19 18 41 41 H 0.96705 * 114.00004 * 180.02562 * 21 20 19 42 42 H 1.09001 * 113.61704 * 334.57638 * 22 19 18 43 43 H 1.09000 * 113.61254 * 105.47267 * 22 19 18 44 44 H 1.09002 * 113.53652 * 270.80911 * 23 22 19 45 45 H 1.09000 * 113.73814 * 139.94682 * 23 22 19 46 46 H 1.08998 * 113.61685 * 220.09125 * 24 23 22 47 47 H 1.09005 * 113.68791 * 89.19681 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0739 1.5116 2.0484 6 6 2.0268 3.3495 1.5284 7 7 2.7119 4.0019 0.6149 8 14 1.5817 4.1873 3.1376 9 1 0.8137 3.2451 3.9904 10 1 2.8232 4.5950 3.8433 11 1 0.7543 5.3883 2.8581 12 6 1.9954 -0.7660 -1.1375 13 6 1.6315 -2.2427 -0.9703 14 1 0.5472 -2.3475 -0.9322 15 8 2.2009 -2.7392 0.2427 16 6 2.1792 -3.0403 -2.1554 17 7 1.7287 -4.4351 -2.0570 18 6 2.2372 -5.2331 -3.1806 19 6 1.7477 -6.6762 -3.0439 20 6 0.2391 -6.7721 -2.8082 21 8 -0.1321 -5.9007 -1.7381 22 6 2.5794 -7.5185 -2.0622 23 6 2.4442 -8.6771 -3.0670 24 6 2.2578 -7.6077 -4.1562 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3633 0.5740 0.8524 27 1 -0.3634 0.4512 -0.9233 28 1 3.0797 1.3444 -0.1083 29 1 1.5611 1.9273 -0.8310 30 1 2.9859 4.9182 0.7765 31 1 3.0797 -0.6611 -1.1756 32 1 1.5611 -0.3873 -2.0628 33 1 3.1652 -2.6771 0.2787 34 1 3.2686 -3.0086 -2.1422 35 1 1.8143 -2.6055 -3.0859 36 1 1.9994 -4.8411 -1.1738 37 1 3.3271 -5.2166 -3.1742 38 1 1.8730 -4.8135 -4.1184 39 1 -0.2898 -6.4793 -3.7153 40 1 -0.0238 -7.7977 -2.5494 41 1 -1.0771 -5.9103 -1.5328 42 1 3.6026 -7.1633 -1.9403 43 1 2.0783 -7.7027 -1.1119 44 1 1.5601 -9.2934 -2.9043 45 1 3.3545 -9.2651 -3.1836 46 1 1.4975 -7.8639 -4.8940 47 1 3.1923 -7.2762 -4.6090 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592430121.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:57 Heat of formation + Delta-G solvation = -68.951922 kcal Electronic energy + Delta-G solvation = -23406.618971 eV Core-core repulsion = 20011.338824 eV Total energy + Delta-G solvation = -3395.280146 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 286.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.07952 -38.07978 -35.94398 -35.71014 -34.46989 -32.46779 -30.20359 -28.37128 -27.02690 -26.24375 -25.96176 -24.88668 -23.18213 -21.96535 -21.14238 -20.05577 -18.58604 -17.34271 -16.49813 -16.26626 -15.89666 -15.65308 -15.35593 -14.85158 -14.72106 -14.44715 -14.07050 -13.91412 -13.53562 -13.19230 -13.09613 -12.82562 -12.53909 -12.44050 -12.03579 -11.84856 -11.80948 -11.45898 -11.25989 -11.01579 -10.81979 -10.64657 -10.63153 -10.60805 -10.52878 -10.46396 -10.18441 -9.92284 -9.80819 -9.48283 -9.02524 -8.39897 -8.10484 -7.11207 -5.98690 -3.99230 3.34238 3.41335 3.47479 3.82597 4.11483 4.25720 4.45552 4.49964 4.58711 4.83843 4.87088 4.94591 5.08454 5.21746 5.27438 5.33035 5.36356 5.38293 5.44377 5.47218 5.49258 5.54098 5.61019 5.65635 5.70577 5.81207 5.83590 5.90693 6.02861 6.11950 6.16682 6.30982 6.42262 6.55231 6.85941 7.16949 7.33892 7.39302 7.64110 7.76685 7.86174 8.08344 8.18296 8.28463 8.62140 9.09526 9.64852 11.12418 Molecular weight = 286.20amu Principal moments of inertia in cm(-1) A = 0.041945 B = 0.002626 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.384713 B =10661.138793 C =10805.581439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.502 4.502 5 H 0.065 0.935 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.025 3.975 13 C 0.118 3.882 14 H 0.103 0.897 15 O -0.545 6.545 16 C 0.026 3.974 17 N -0.652 5.652 18 C 0.079 3.921 19 C -0.080 4.080 20 C 0.110 3.890 21 O -0.531 6.531 22 C -0.131 4.131 23 C -0.143 4.143 24 C -0.128 4.128 25 H 0.049 0.951 26 H 0.073 0.927 27 H 0.007 0.993 28 H 0.027 0.973 29 H -0.011 1.011 30 H 0.260 0.740 31 H 0.066 0.934 32 H 0.027 0.973 33 H 0.365 0.635 34 H 0.023 0.977 35 H 0.072 0.928 36 H 0.349 0.651 37 H 0.023 0.977 38 H 0.065 0.935 39 H 0.039 0.961 40 H 0.035 0.965 41 H 0.365 0.635 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.895 -24.408 -10.383 26.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.541 4.541 5 H 0.083 0.917 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.105 4.105 13 C 0.058 3.942 14 H 0.121 0.879 15 O -0.349 6.349 16 C -0.104 4.104 17 N -0.284 5.284 18 C -0.050 4.050 19 C -0.080 4.080 20 C 0.032 3.968 21 O -0.333 6.333 22 C -0.169 4.169 23 C -0.180 4.180 24 C -0.166 4.166 25 H 0.067 0.933 26 H 0.092 0.908 27 H 0.025 0.975 28 H 0.045 0.955 29 H 0.006 0.994 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.210 0.790 34 H 0.041 0.959 35 H 0.090 0.910 36 H 0.169 0.831 37 H 0.041 0.959 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.210 0.790 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.245 -24.312 -10.135 26.436 hybrid contribution 0.575 0.971 -0.129 1.136 sum -1.670 -23.341 -10.264 25.553 Atomic orbital electron populations 1.22240 0.88961 0.99718 1.00203 1.62007 1.06885 1.17218 1.39196 1.19746 0.95217 0.81807 0.96577 1.21222 1.34404 0.96792 1.01683 0.91724 1.25004 0.95396 0.97387 0.97022 1.69971 1.38720 1.11351 1.34084 0.86437 0.78131 0.79265 0.83581 1.19599 1.21046 1.21177 1.22724 1.00201 0.94241 0.93367 1.21925 0.98988 0.90480 0.82797 0.87925 1.86603 1.24590 1.84930 1.38728 1.22697 0.96932 0.90676 1.00080 1.60276 1.62497 1.00446 1.05208 1.21807 0.95746 0.91913 0.95578 1.21901 0.94722 0.94279 0.97122 1.21604 0.92727 0.92179 0.90321 1.86847 1.28169 1.65329 1.53004 1.23007 1.00001 0.95987 0.97870 1.22873 1.01898 0.96452 0.96810 1.22929 1.01422 0.96125 0.96137 0.93276 0.90827 0.97457 0.95475 0.99372 0.93066 0.91550 0.95480 0.78970 0.95859 0.90967 0.83102 0.95940 0.91704 0.94319 0.94716 0.78997 0.90319 0.90943 0.90273 0.91483 0.91351 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 9.14 60.06 0.55 1.32 16 2 N -0.53 -11.91 4.62 -244.38 -1.13 -13.04 16 3 C 0.19 5.16 4.72 -4.98 -0.02 5.14 16 4 C -0.50 -14.54 8.46 -34.44 -0.29 -14.83 16 5 H 0.06 1.87 7.12 -52.49 -0.37 1.50 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16 8 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.02 0.45 4.62 -3.82 -0.02 0.43 16 13 C 0.12 1.82 3.07 -26.73 -0.08 1.74 16 14 H 0.10 1.72 6.55 -51.93 -0.34 1.38 16 15 O -0.55 -8.90 12.72 -35.23 -0.45 -9.34 16 16 C 0.03 0.34 5.36 -3.82 -0.02 0.32 16 17 N -0.65 -7.81 4.07 -113.78 -0.46 -8.27 16 18 C 0.08 0.80 5.13 -3.82 -0.02 0.79 16 19 C -0.08 -0.68 0.98 -153.70 -0.15 -0.83 16 20 C 0.11 0.94 6.37 37.15 0.24 1.17 16 21 O -0.53 -5.40 10.90 -35.23 -0.38 -5.79 16 22 C -0.13 -1.07 7.16 -25.83 -0.18 -1.26 16 23 C -0.14 -0.95 7.74 -25.83 -0.20 -1.15 16 24 C -0.13 -0.88 7.23 -25.92 -0.19 -1.07 16 25 H 0.05 0.91 6.47 -51.93 -0.34 0.57 16 26 H 0.07 1.63 6.76 -51.93 -0.35 1.28 16 27 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 29 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 32 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 33 H 0.36 4.96 9.05 45.56 0.41 5.37 16 34 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.35 4.52 7.98 -39.29 -0.31 4.21 16 37 H 0.02 0.23 7.98 -51.93 -0.41 -0.19 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.03 0.26 7.34 -51.93 -0.38 -0.12 16 41 H 0.36 2.53 9.12 45.56 0.42 2.94 16 42 H 0.08 0.65 7.99 -51.93 -0.41 0.24 16 43 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 44 H 0.08 0.49 7.64 -51.93 -0.40 0.09 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 47 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 LS Contribution 369.47 15.07 5.57 5.57 Total: -1.00 -32.28 369.47 -8.73 -41.01 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.09 Total: 6.14 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -0.49 Total: -6.80 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -0.86 Total: -47.89 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.83 Total: -15.13 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.28 -8.73 -41.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592430121.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.943 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds