Wall clock time and date at job start Tue Mar 31 2020 03:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 110.99998 * 2 1 4 4 C 1.50693 * 109.47349 * 66.04631 * 3 2 1 5 5 H 1.08001 * 120.00204 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00161 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00216 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99834 * 179.97438 * 6 4 3 9 9 H 1.48490 * 109.47505 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47097 * 120.00366 * 8 6 4 11 11 H 1.48502 * 109.46925 * 239.99400 * 8 6 4 12 12 C 1.46897 * 110.99950 * 236.04393 * 2 1 3 13 13 C 1.53001 * 109.47485 * 293.95179 * 12 2 1 14 14 H 1.09003 * 109.46548 * 59.99677 * 13 12 2 15 15 O 1.42898 * 109.47209 * 300.00164 * 13 12 2 16 16 C 1.52995 * 109.47271 * 179.97438 * 13 12 2 17 17 N 1.46906 * 109.46978 * 185.00310 * 16 13 12 18 18 C 1.46901 * 110.99793 * 180.02562 * 17 16 13 19 19 C 1.53000 * 109.46769 * 180.02562 * 18 17 16 20 20 C 1.52992 * 112.85191 * 50.33243 * 19 18 17 21 21 O 1.42904 * 109.47055 * 309.66440 * 20 19 18 22 22 C 1.53779 * 113.61407 * 279.13071 * 19 18 17 23 23 C 1.53953 * 87.02175 * 220.05144 * 22 19 18 24 24 C 1.53775 * 87.11168 * 25.36354 * 23 22 19 25 25 H 1.09002 * 109.47184 * 183.95292 * 1 2 3 26 26 H 1.09004 * 109.47058 * 303.95538 * 1 2 3 27 27 H 1.08995 * 109.47346 * 63.95772 * 1 2 3 28 28 H 1.08998 * 109.47267 * 186.04799 * 3 2 1 29 29 H 1.09000 * 109.46947 * 306.04101 * 3 2 1 30 30 H 0.96995 * 120.00160 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47032 * 173.95165 * 12 2 1 32 32 H 1.09001 * 109.47160 * 53.95777 * 12 2 1 33 33 H 0.96694 * 114.00116 * 300.00232 * 15 13 12 34 34 H 1.08995 * 109.46859 * 65.00602 * 16 13 12 35 35 H 1.09002 * 109.47639 * 305.00270 * 16 13 12 36 36 H 1.00898 * 110.99995 * 303.95410 * 17 16 13 37 37 H 1.09002 * 109.47401 * 59.99808 * 18 17 16 38 38 H 1.09001 * 109.46874 * 299.99821 * 18 17 16 39 39 H 1.09001 * 109.47594 * 69.66439 * 20 19 18 40 40 H 1.09001 * 109.47256 * 189.66851 * 20 19 18 41 41 H 0.96705 * 114.00004 * 180.02562 * 21 20 19 42 42 H 1.09001 * 113.61704 * 334.57638 * 22 19 18 43 43 H 1.09000 * 113.61254 * 105.47267 * 22 19 18 44 44 H 1.09002 * 113.53652 * 270.80911 * 23 22 19 45 45 H 1.09000 * 113.73814 * 139.94682 * 23 22 19 46 46 H 1.08998 * 113.61685 * 220.09125 * 24 23 22 47 47 H 1.09005 * 113.68791 * 89.19681 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0739 1.5116 2.0484 6 6 2.0268 3.3495 1.5284 7 7 2.7119 4.0019 0.6149 8 14 1.5817 4.1873 3.1376 9 1 0.8137 3.2451 3.9904 10 1 2.8232 4.5950 3.8433 11 1 0.7543 5.3883 2.8581 12 6 1.9954 -0.7660 -1.1375 13 6 1.6315 -2.2427 -0.9703 14 1 0.5472 -2.3475 -0.9322 15 8 2.2009 -2.7392 0.2427 16 6 2.1792 -3.0403 -2.1554 17 7 1.7287 -4.4351 -2.0570 18 6 2.2372 -5.2331 -3.1806 19 6 1.7477 -6.6762 -3.0439 20 6 0.2391 -6.7721 -2.8082 21 8 -0.1321 -5.9007 -1.7381 22 6 2.5794 -7.5185 -2.0622 23 6 2.4442 -8.6771 -3.0670 24 6 2.2578 -7.6077 -4.1562 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3633 0.5740 0.8524 27 1 -0.3634 0.4512 -0.9233 28 1 3.0797 1.3444 -0.1083 29 1 1.5611 1.9273 -0.8310 30 1 2.9859 4.9182 0.7765 31 1 3.0797 -0.6611 -1.1756 32 1 1.5611 -0.3873 -2.0628 33 1 3.1652 -2.6771 0.2787 34 1 3.2686 -3.0086 -2.1422 35 1 1.8143 -2.6055 -3.0859 36 1 1.9994 -4.8411 -1.1738 37 1 3.3271 -5.2166 -3.1742 38 1 1.8730 -4.8135 -4.1184 39 1 -0.2898 -6.4793 -3.7153 40 1 -0.0238 -7.7977 -2.5494 41 1 -1.0771 -5.9103 -1.5328 42 1 3.6026 -7.1633 -1.9403 43 1 2.0783 -7.7027 -1.1119 44 1 1.5601 -9.2934 -2.9043 45 1 3.3545 -9.2651 -3.1836 46 1 1.4975 -7.8639 -4.8940 47 1 3.1923 -7.2762 -4.6090 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592430121.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:56 Heat of formation + Delta-G solvation = -95.264381 kcal Electronic energy + Delta-G solvation = -23407.759965 eV Core-core repulsion = 20011.338824 eV Total energy + Delta-G solvation = -3396.421140 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 286.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.72998 -39.46957 -37.30750 -36.62129 -35.54638 -34.61690 -31.44928 -29.58908 -28.76919 -27.46435 -26.54829 -26.22358 -24.60742 -22.73867 -22.56444 -21.72436 -19.22638 -18.57193 -18.05765 -17.39149 -17.16296 -16.73152 -16.53903 -16.10809 -16.01071 -15.69481 -15.53292 -15.15562 -14.74973 -14.49800 -13.99714 -13.88232 -13.80478 -13.54603 -13.32802 -13.20346 -12.98456 -12.73756 -12.57771 -12.56630 -12.45192 -12.34050 -12.10933 -12.00056 -11.58293 -11.39837 -11.27051 -11.18860 -11.08316 -10.64609 -10.62923 -10.43253 -9.03386 -8.95716 -8.21186 -6.31022 1.40645 1.41237 1.55607 2.40243 2.96363 3.11170 3.31352 3.50896 3.62974 3.73700 3.88812 3.94659 4.08219 4.18006 4.24383 4.32387 4.36227 4.45029 4.55665 4.61402 4.66842 4.69800 4.71550 4.74118 4.82398 4.84722 4.87088 4.91291 5.01161 5.07226 5.11365 5.16711 5.18979 5.19955 5.33122 5.40804 5.54119 5.64946 6.04320 6.24741 6.33066 6.62618 6.66727 6.85412 6.98131 7.20512 7.38728 8.90177 Molecular weight = 286.20amu Principal moments of inertia in cm(-1) A = 0.041945 B = 0.002626 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.384713 B =10661.138793 C =10805.581439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.539 5.539 3 C 0.207 3.793 4 C -0.521 4.521 5 H 0.061 0.939 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.971 3.029 9 H -0.265 1.265 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.025 3.975 13 C 0.134 3.866 14 H 0.093 0.907 15 O -0.559 6.559 16 C 0.037 3.963 17 N -0.653 5.653 18 C 0.079 3.921 19 C -0.085 4.085 20 C 0.110 3.890 21 O -0.553 6.553 22 C -0.134 4.134 23 C -0.136 4.136 24 C -0.122 4.122 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.010 0.990 28 H 0.003 0.997 29 H -0.040 1.040 30 H 0.265 0.735 31 H 0.065 0.935 32 H 0.030 0.970 33 H 0.376 0.624 34 H 0.030 0.970 35 H 0.074 0.926 36 H 0.344 0.656 37 H 0.024 0.976 38 H 0.062 0.938 39 H 0.041 0.959 40 H 0.046 0.954 41 H 0.377 0.623 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.271 -25.748 -10.314 27.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.262 5.262 3 C 0.080 3.920 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.576 5.576 8 Si 0.795 3.205 9 H -0.189 1.189 10 H -0.203 1.203 11 H -0.203 1.203 12 C -0.104 4.104 13 C 0.075 3.925 14 H 0.111 0.889 15 O -0.364 6.364 16 C -0.093 4.093 17 N -0.285 5.285 18 C -0.050 4.050 19 C -0.085 4.085 20 C 0.031 3.969 21 O -0.358 6.358 22 C -0.171 4.171 23 C -0.173 4.173 24 C -0.160 4.160 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.028 0.972 28 H 0.022 0.978 29 H -0.022 1.022 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.048 0.952 33 H 0.224 0.776 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.163 0.837 37 H 0.042 0.958 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.224 0.776 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.627 -25.680 -10.079 27.712 hybrid contribution 0.699 1.347 -0.189 1.529 sum -1.928 -24.333 -10.268 26.481 Atomic orbital electron populations 1.22204 0.87850 1.01036 0.99524 1.61932 1.07984 1.14777 1.41545 1.19408 0.93609 0.83986 0.94958 1.21491 1.34686 0.97477 1.02320 0.92096 1.25934 0.95026 0.98035 1.00802 1.70089 1.39490 1.11876 1.36176 0.85311 0.78122 0.78143 0.78902 1.18859 1.20255 1.20285 1.22830 1.00032 0.95593 0.91986 1.21707 0.98472 0.88649 0.83717 0.88875 1.86566 1.25805 1.84821 1.39249 1.22511 0.97170 0.91014 0.98645 1.60279 1.62687 1.00022 1.05515 1.21855 0.95819 0.92697 0.94628 1.21977 0.94906 0.93400 0.98234 1.21671 0.92635 0.92550 0.90012 1.86795 1.29468 1.65933 1.53611 1.23000 0.99598 0.96902 0.97643 1.22854 1.02593 0.96082 0.95778 1.22917 1.01744 0.95393 0.95949 0.90666 0.92623 0.97169 0.97840 1.02218 0.92664 0.91622 0.95171 0.77628 0.95164 0.90717 0.83689 0.95801 0.91928 0.94109 0.93550 0.77640 0.90643 0.92073 0.89620 0.90703 0.90420 0.89366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.74 9.14 127.69 1.17 2.91 16 2 N -0.54 -24.42 4.62 -927.07 -4.28 -28.70 16 3 C 0.21 11.44 4.72 85.55 0.40 11.84 16 4 C -0.52 -30.61 8.46 25.60 0.22 -30.39 16 5 H 0.06 3.55 7.12 -2.91 -0.02 3.53 16 6 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 7 N -0.94 -57.37 13.29 21.45 0.28 -57.09 16 8 Si 0.97 45.37 29.54 68.60 2.03 47.39 16 9 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 C 0.02 0.90 4.62 86.30 0.40 1.30 16 13 C 0.13 4.02 3.07 30.59 0.09 4.11 16 14 H 0.09 3.00 6.55 -2.39 -0.02 2.98 16 15 O -0.56 -17.70 12.72 -148.98 -1.90 -19.59 16 16 C 0.04 0.90 5.36 86.30 0.46 1.36 16 17 N -0.65 -14.87 4.07 -513.88 -2.09 -16.96 16 18 C 0.08 1.50 5.13 86.30 0.44 1.95 16 19 C -0.08 -1.31 0.98 -51.66 -0.05 -1.36 16 20 C 0.11 1.69 6.37 71.98 0.46 2.15 16 21 O -0.55 -10.63 10.90 -148.98 -1.62 -12.26 16 22 C -0.13 -2.02 7.16 31.18 0.22 -1.80 16 23 C -0.14 -1.53 7.74 31.18 0.24 -1.28 16 24 C -0.12 -1.42 7.23 31.12 0.23 -1.19 16 25 H 0.07 2.70 6.47 -2.39 -0.02 2.68 16 26 H 0.05 2.47 6.76 -2.39 -0.02 2.46 16 27 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.00 0.21 7.93 -2.39 -0.02 0.19 16 29 H -0.04 -2.38 8.12 -2.39 -0.02 -2.40 16 30 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.07 2.37 7.93 -2.39 -0.02 2.36 16 32 H 0.03 1.08 8.12 -2.39 -0.02 1.07 16 33 H 0.38 9.88 9.05 -74.06 -0.67 9.21 16 34 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.34 8.55 7.98 -89.70 -0.72 7.84 16 37 H 0.02 0.45 7.98 -2.39 -0.02 0.43 16 38 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.05 0.60 7.34 -2.39 -0.02 0.58 16 41 H 0.38 4.84 9.12 -74.05 -0.68 4.16 16 42 H 0.07 1.17 7.99 -2.39 -0.02 1.15 16 43 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 44 H 0.09 0.86 7.64 -2.39 -0.02 0.84 16 45 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.08 0.77 8.10 -2.39 -0.02 0.75 16 47 H 0.09 0.97 8.10 -2.38 -0.02 0.95 16 Total: -1.00 -68.62 369.47 -3.94 -72.56 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: -1.10 Total: 24.61 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: 4.75 Total: -9.96 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -6.09 Total: -102.75 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -3.52 Total: -31.85 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -68.62 -3.94 -72.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592430121.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.704 kcal (2) G-P(sol) polarization free energy of solvation -68.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds