Wall clock time and date at job start Tue Mar 31 2020 03:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 111.00028 * 2 1 4 4 C 1.50702 * 109.47509 * 66.04249 * 3 2 1 5 5 H 1.08002 * 119.99441 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00075 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00481 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99886 * 179.73007 * 6 4 3 9 9 H 1.48494 * 109.47225 * 180.27306 * 8 6 4 10 10 H 1.48506 * 109.46866 * 300.27330 * 8 6 4 11 11 H 1.48498 * 109.47306 * 60.26614 * 8 6 4 12 12 C 1.46899 * 111.00430 * 236.04580 * 2 1 3 13 13 C 1.53007 * 109.47048 * 293.95308 * 12 2 1 14 14 H 1.09008 * 109.46819 * 59.99853 * 13 12 2 15 15 O 1.42899 * 109.46854 * 300.00114 * 13 12 2 16 16 C 1.52991 * 109.47292 * 179.97438 * 13 12 2 17 17 N 1.46902 * 109.47168 * 184.99947 * 16 13 12 18 18 C 1.46899 * 110.99800 * 179.97438 * 17 16 13 19 19 C 1.53005 * 109.46810 * 179.97438 * 18 17 16 20 20 H 1.09000 * 110.67226 * 303.22294 * 19 18 17 21 21 C 1.54890 * 110.75690 * 66.45823 * 19 18 17 22 22 C 1.54261 * 104.19840 * 156.25395 * 21 19 18 23 23 C 1.53874 * 106.59918 * 336.39004 * 22 21 19 24 24 H 1.08995 * 110.03750 * 240.71351 * 23 22 21 25 25 O 1.42899 * 110.03413 * 119.32971 * 23 22 21 26 26 C 1.54269 * 106.59998 * 359.97438 * 23 22 21 27 27 H 1.08998 * 109.46877 * 60.00257 * 1 2 3 28 28 H 1.09005 * 109.46493 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46943 * 300.00156 * 1 2 3 30 30 H 1.09009 * 109.47165 * 306.04669 * 3 2 1 31 31 H 1.08998 * 109.47687 * 186.05120 * 3 2 1 32 32 H 0.97005 * 119.99656 * 359.72741 * 7 6 4 33 33 H 1.09001 * 109.46727 * 53.94788 * 12 2 1 34 34 H 1.09000 * 109.47488 * 173.95207 * 12 2 1 35 35 H 0.96700 * 113.99806 * 299.99674 * 15 13 12 36 36 H 1.09002 * 109.47260 * 304.99857 * 16 13 12 37 37 H 1.08996 * 109.47066 * 64.99979 * 16 13 12 38 38 H 1.00902 * 110.99724 * 56.04950 * 17 16 13 39 39 H 1.08995 * 109.47872 * 299.99871 * 18 17 16 40 40 H 1.09000 * 109.47091 * 60.00706 * 18 17 16 41 41 H 1.08996 * 110.48534 * 274.93799 * 21 19 18 42 42 H 1.09001 * 110.48468 * 37.57495 * 21 19 18 43 43 H 1.08998 * 110.03242 * 95.67559 * 22 21 19 44 44 H 1.08998 * 110.03328 * 217.05431 * 22 21 19 45 45 H 0.96703 * 113.99752 * 61.45662 * 25 23 22 46 46 H 1.08997 * 110.48893 * 264.93472 * 26 23 22 47 47 H 1.08999 * 110.48980 * 142.28308 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0745 1.5113 2.0487 6 6 2.0267 3.3495 1.5283 7 7 2.7120 4.0020 0.6149 8 14 1.5758 4.1897 3.1347 9 1 2.1028 5.5780 3.1322 10 1 0.0981 4.2214 3.2788 11 1 2.1677 3.4374 4.2700 12 6 1.9955 -0.7660 -1.1375 13 6 1.6316 -2.2427 -0.9703 14 1 0.5472 -2.3475 -0.9323 15 8 2.2010 -2.7391 0.2427 16 6 2.1794 -3.0403 -2.1553 17 7 1.7290 -4.4351 -2.0568 18 6 2.2366 -5.2328 -3.1811 19 6 1.7482 -6.6763 -3.0437 20 1 2.0550 -7.0968 -2.0860 21 6 0.2101 -6.7536 -3.2097 22 6 -0.0497 -8.2071 -3.6563 23 6 1.2554 -8.7098 -4.2980 24 1 1.0794 -8.9812 -5.3388 25 8 1.7532 -9.8379 -3.5758 26 6 2.2626 -7.5439 -4.2196 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.5611 1.9274 -0.8310 31 1 3.0797 1.3445 -0.1083 32 1 2.9465 3.5656 -0.2191 33 1 1.5611 -0.3873 -2.0627 34 1 3.0798 -0.6610 -1.1756 35 1 3.1653 -2.6770 0.2788 36 1 1.8144 -2.6055 -3.0858 37 1 3.2688 -3.0086 -2.1421 38 1 0.7228 -4.4871 -2.0022 39 1 1.8717 -4.8132 -4.1185 40 1 3.3264 -5.2164 -3.1754 41 1 -0.2866 -6.5514 -2.2608 42 1 -0.1266 -6.0536 -3.9744 43 1 -0.3029 -8.8232 -2.7935 44 1 -0.8597 -8.2347 -4.3850 45 1 1.1544 -10.5972 -3.5710 46 1 2.2571 -6.9719 -5.1474 47 1 3.2640 -7.9184 -4.0071 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592431491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:46 Heat of formation + Delta-G solvation = -114.495491 kcal Electronic energy + Delta-G solvation = -22782.499242 eV Core-core repulsion = 19385.244178 eV Total energy + Delta-G solvation = -3397.255064 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 286.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.46006 -38.26613 -36.51367 -35.53941 -34.28206 -32.70971 -30.57697 -29.19874 -28.19117 -26.79755 -25.80660 -24.01396 -22.97545 -21.50120 -20.77685 -20.41972 -20.15730 -17.87950 -16.77410 -16.63652 -16.11760 -15.64825 -15.41969 -14.91899 -14.73651 -14.63144 -14.13744 -13.90119 -13.66766 -13.52786 -13.41287 -13.01120 -12.62065 -12.55164 -12.10234 -11.78914 -11.64825 -11.41256 -11.32698 -11.28023 -11.06196 -10.96556 -10.90918 -10.85456 -10.71062 -10.62866 -10.29655 -10.24949 -10.05640 -9.57094 -8.62903 -8.52183 -8.35939 -7.28478 -6.35390 -4.03653 3.46464 3.49274 3.67508 3.75590 3.88721 4.19324 4.23414 4.49289 4.55290 4.70816 4.79371 4.85212 5.00217 5.05079 5.11487 5.16959 5.22876 5.26527 5.35006 5.40642 5.42687 5.49537 5.52321 5.57939 5.59879 5.63117 5.67607 5.76963 5.89770 5.96396 6.10626 6.12550 6.22393 6.34158 6.68801 6.84454 6.97984 7.09160 7.21576 7.26299 7.78808 7.98194 8.11854 8.34166 8.61322 8.88719 9.66812 11.03667 Molecular weight = 286.20amu Principal moments of inertia in cm(-1) A = 0.050507 B = 0.002232 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.243604 B =12541.996566 C =12667.833953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.522 5.522 3 C 0.182 3.818 4 C -0.585 4.585 5 H 0.058 0.942 6 C 0.012 3.988 7 N -0.915 5.915 8 Si 1.073 2.927 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.287 1.287 12 C 0.022 3.978 13 C 0.118 3.882 14 H 0.091 0.909 15 O -0.535 6.535 16 C 0.027 3.973 17 N -0.678 5.678 18 C 0.066 3.934 19 C -0.087 4.087 20 H 0.089 0.911 21 C -0.121 4.121 22 C -0.157 4.157 23 C 0.099 3.901 24 H 0.055 0.945 25 O -0.566 6.566 26 C -0.114 4.114 27 H 0.008 0.992 28 H 0.048 0.952 29 H 0.075 0.925 30 H -0.022 1.022 31 H 0.018 0.982 32 H 0.265 0.735 33 H 0.026 0.974 34 H 0.069 0.931 35 H 0.369 0.631 36 H 0.034 0.966 37 H 0.075 0.925 38 H 0.340 0.660 39 H 0.027 0.973 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.376 0.624 46 H 0.077 0.923 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.050 -24.519 -12.469 27.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.246 5.246 3 C 0.057 3.943 4 C -0.624 4.624 5 H 0.076 0.924 6 C -0.191 4.191 7 N -0.552 5.552 8 Si 0.901 3.099 9 H -0.209 1.209 10 H -0.215 1.215 11 H -0.213 1.213 12 C -0.108 4.108 13 C 0.058 3.942 14 H 0.109 0.891 15 O -0.338 6.338 16 C -0.103 4.103 17 N -0.309 5.309 18 C -0.063 4.063 19 C -0.106 4.106 20 H 0.108 0.892 21 C -0.159 4.159 22 C -0.195 4.195 23 C 0.040 3.960 24 H 0.073 0.927 25 O -0.371 6.371 26 C -0.152 4.152 27 H 0.026 0.974 28 H 0.067 0.933 29 H 0.094 0.906 30 H -0.004 1.004 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.088 0.912 35 H 0.215 0.785 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.158 0.842 39 H 0.045 0.955 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.223 0.777 46 H 0.096 0.904 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.365 -23.199 -10.534 25.700 hybrid contribution -0.928 -0.906 -2.839 3.121 sum -4.293 -24.105 -13.373 27.898 Atomic orbital electron populations 1.22237 0.88729 0.99300 1.00728 1.61928 1.07008 1.16574 1.39082 1.19856 0.94555 0.82975 0.96925 1.21975 1.38645 0.99634 1.02140 0.92392 1.25880 0.94495 0.94754 1.03995 1.70808 1.36677 1.39822 1.07913 0.83478 0.76034 0.75998 0.74349 1.20888 1.21496 1.21299 1.22761 1.00477 0.94261 0.93262 1.21836 0.98118 0.90526 0.83765 0.89129 1.86588 1.24920 1.84920 1.37406 1.22728 1.01178 0.88468 0.97967 1.60357 1.16419 1.10072 1.44040 1.21970 1.00341 0.92480 0.91555 1.22151 0.94733 0.94358 0.99370 0.89228 1.22394 0.96240 0.95808 1.01454 1.22915 0.97729 0.97828 1.01015 1.22444 0.93045 0.86669 0.93825 0.92685 1.86562 1.48637 1.25159 1.76778 1.22403 0.99379 0.94595 0.98793 0.97399 0.93336 0.90646 1.00447 0.96373 0.92466 0.95628 0.91234 0.78498 0.94795 0.90631 0.84211 0.95502 0.90989 0.90994 0.91792 0.90763 0.91504 0.77711 0.90449 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 9.16 60.06 0.55 1.34 16 2 N -0.52 -11.59 4.62 -244.36 -1.13 -12.72 16 3 C 0.18 4.83 4.03 -4.98 -0.02 4.81 16 4 C -0.59 -16.99 8.51 -34.44 -0.29 -17.28 16 5 H 0.06 1.69 7.10 -52.49 -0.37 1.32 16 6 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 7 N -0.92 -28.26 13.65 55.43 0.76 -27.50 16 8 Si 1.07 25.74 29.90 -169.99 -5.08 20.66 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 12 C 0.02 0.39 4.62 -3.82 -0.02 0.37 16 13 C 0.12 1.73 3.02 -26.73 -0.08 1.64 16 14 H 0.09 1.36 6.47 -51.92 -0.34 1.02 16 15 O -0.53 -8.79 13.15 -35.23 -0.46 -9.25 16 16 C 0.03 0.31 5.32 -3.83 -0.02 0.29 16 17 N -0.68 -7.37 6.45 -113.78 -0.73 -8.10 16 18 C 0.07 0.60 5.18 -3.82 -0.02 0.58 16 19 C -0.09 -0.73 3.15 -88.61 -0.28 -1.01 16 20 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 21 C -0.12 -0.90 5.51 -25.07 -0.14 -1.04 16 22 C -0.16 -1.01 6.60 -25.62 -0.17 -1.17 16 23 C 0.10 0.68 4.26 -25.61 -0.11 0.58 16 24 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 25 O -0.57 -4.42 13.22 -35.23 -0.47 -4.89 16 26 C -0.11 -0.86 6.01 -25.05 -0.15 -1.01 16 27 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.05 0.85 6.30 -51.93 -0.33 0.53 16 29 H 0.07 1.66 6.86 -51.93 -0.36 1.31 16 30 H -0.02 -0.61 7.99 -51.92 -0.41 -1.03 16 31 H 0.02 0.50 7.79 -51.93 -0.40 0.10 16 32 H 0.27 8.15 7.22 -40.82 -0.29 7.86 16 33 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 34 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 35 H 0.37 5.14 9.05 45.56 0.41 5.56 16 36 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.34 3.54 7.85 -39.29 -0.31 3.23 16 39 H 0.03 0.23 8.10 -51.93 -0.42 -0.19 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.57 8.01 -51.93 -0.42 0.15 16 42 H 0.06 0.45 8.01 -51.93 -0.42 0.04 16 43 H 0.07 0.48 7.95 -51.93 -0.41 0.07 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.38 1.37 9.10 45.56 0.41 1.79 16 46 H 0.08 0.50 8.05 -51.93 -0.42 0.08 16 47 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 LS Contribution 370.15 15.07 5.58 5.58 Total: -1.00 -33.62 370.15 -9.47 -43.08 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -7.08 Total: 4.81 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -0.85 Total: -11.66 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -1.11 Total: -48.32 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.93 Total: -14.15 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.08 Total: 20.66 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.62 -9.47 -43.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592431491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.415 kcal (2) G-P(sol) polarization free energy of solvation -33.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds