Wall clock time and date at job start Tue Mar 31 2020 03:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99305 * 2 1 4 4 C 1.50702 * 109.47206 * 293.94981 * 3 2 1 5 5 H 1.07990 * 119.99891 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99588 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99568 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 120.00409 * 0.02562 * 6 4 3 9 9 H 1.48502 * 109.47442 * 89.99373 * 8 6 4 10 10 H 1.48498 * 109.47152 * 209.99930 * 8 6 4 11 11 H 1.48506 * 109.46689 * 329.99562 * 8 6 4 12 12 C 1.46899 * 110.99991 * 123.95060 * 2 1 3 13 13 C 1.52998 * 109.46858 * 163.94840 * 12 2 1 14 14 H 1.09003 * 109.47469 * 55.04211 * 13 12 2 15 15 O 1.42900 * 109.47173 * 295.04684 * 13 12 2 16 16 C 1.53000 * 109.47107 * 175.04575 * 13 12 2 17 17 N 1.46904 * 109.47085 * 184.99848 * 16 13 12 18 18 C 1.46902 * 110.99534 * 180.02562 * 17 16 13 19 19 C 1.53005 * 109.46751 * 180.02562 * 18 17 16 20 20 H 1.09004 * 110.01533 * 305.70009 * 19 18 17 21 21 C 1.53875 * 110.02981 * 67.08868 * 19 18 17 22 22 C 1.54273 * 106.59542 * 119.28836 * 21 19 18 23 23 C 1.54887 * 104.19529 * 23.60566 * 22 21 19 24 24 H 1.09003 * 110.75596 * 80.56300 * 23 22 21 25 25 O 1.42902 * 110.75274 * 203.74309 * 23 22 21 26 26 C 1.54261 * 110.03103 * 184.30873 * 19 18 17 27 27 H 1.08998 * 109.47439 * 65.32228 * 1 2 3 28 28 H 1.08994 * 109.47470 * 305.31641 * 1 2 3 29 29 H 1.09004 * 109.46549 * 185.31844 * 1 2 3 30 30 H 1.08997 * 109.47475 * 53.95587 * 3 2 1 31 31 H 1.09000 * 109.46537 * 173.95045 * 3 2 1 32 32 H 0.97003 * 119.99757 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47186 * 283.95255 * 12 2 1 34 34 H 1.08998 * 109.46913 * 43.95393 * 12 2 1 35 35 H 0.96698 * 114.00266 * 299.99986 * 15 13 12 36 36 H 1.08996 * 109.47256 * 305.00193 * 16 13 12 37 37 H 1.09001 * 109.46972 * 65.00325 * 16 13 12 38 38 H 1.00898 * 110.99815 * 56.05193 * 17 16 13 39 39 H 1.08997 * 109.47417 * 299.99878 * 18 17 16 40 40 H 1.08997 * 109.47488 * 60.00619 * 18 17 16 41 41 H 1.09000 * 110.03570 * 238.56621 * 21 19 18 42 42 H 1.08993 * 110.03570 * 359.95324 * 21 19 18 43 43 H 1.08996 * 110.48738 * 142.29120 * 22 21 19 44 44 H 1.09001 * 110.48171 * 264.79653 * 22 21 19 45 45 H 0.96700 * 114.00554 * 298.54180 * 25 23 22 46 46 H 1.08994 * 110.48771 * 335.78140 * 26 19 18 47 47 H 1.08998 * 110.48875 * 98.42799 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0266 3.3496 -1.5284 7 7 1.7141 3.9390 -2.6618 8 14 2.9995 4.2764 -0.2308 9 1 4.4520 4.0640 -0.4555 10 1 2.6912 5.7261 -0.3225 11 1 2.6288 3.7757 1.1172 12 6 1.9955 -0.7659 1.1376 13 6 3.4724 -1.0852 0.8977 14 1 4.0177 -0.1608 0.7072 15 8 3.5950 -1.9518 -0.2319 16 6 4.0527 -1.7741 2.1344 17 7 5.4967 -1.9729 1.9519 18 6 6.0891 -2.6340 3.1223 19 6 7.5905 -2.8228 2.8958 20 1 7.7628 -3.3520 1.9585 21 6 8.2951 -1.4552 2.8662 22 6 9.3154 -1.4601 4.0234 23 6 9.5986 -2.9621 4.2738 24 1 10.3168 -3.3458 3.5492 25 8 10.0656 -3.1739 5.6076 26 6 8.2068 -3.6121 4.0693 27 1 -0.3634 0.4290 -0.9338 28 1 -0.3634 0.5940 0.8385 29 1 -0.3632 -1.0233 0.0953 30 1 1.5610 1.9274 0.8309 31 1 3.0796 1.3445 0.1083 32 1 1.9886 4.8552 -2.8238 33 1 1.8943 -0.1776 2.0496 34 1 1.4350 -1.6951 1.2405 35 1 3.1332 -2.7955 -0.1323 36 1 3.8797 -1.1513 3.0120 37 1 3.5677 -2.7404 2.2732 38 1 5.9603 -1.0981 1.7572 39 1 5.9303 -2.0176 4.0071 40 1 5.6182 -3.6063 3.2676 41 1 8.8102 -1.3210 1.9150 42 1 7.5675 -0.6570 3.0124 43 1 10.2288 -0.9435 3.7288 44 1 8.8863 -0.9974 4.9121 45 1 10.8952 -2.7204 5.8106 46 1 7.5979 -3.4995 4.9662 47 1 8.3113 -4.6650 3.8077 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592431492.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:49 Heat of formation + Delta-G solvation = -105.666195 kcal Electronic energy + Delta-G solvation = -23096.495555 eV Core-core repulsion = 19699.623358 eV Total energy + Delta-G solvation = -3396.872197 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 286.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.41415 -38.20472 -36.55006 -35.57551 -34.28102 -32.42140 -30.54658 -29.23384 -28.27677 -27.79865 -25.58802 -23.82381 -22.87195 -21.62578 -21.00925 -20.04675 -19.85022 -17.67564 -16.92867 -16.70286 -16.24165 -15.56520 -15.41573 -14.80187 -14.64979 -14.57732 -14.24437 -13.97925 -13.80881 -13.30365 -13.11623 -13.03716 -12.75895 -12.35374 -12.30233 -12.04211 -11.86037 -11.54339 -11.43689 -11.26812 -11.09619 -10.95350 -10.91563 -10.78114 -10.70320 -10.50704 -10.26875 -10.18512 -9.88568 -9.53885 -9.19571 -8.54765 -8.46863 -7.33024 -6.02956 -3.99495 3.27682 3.34807 3.35328 3.63580 4.06933 4.22070 4.27797 4.42514 4.62183 4.70276 4.81256 4.91467 4.95714 5.05688 5.18226 5.22612 5.26505 5.27562 5.33515 5.37784 5.46087 5.53602 5.53817 5.61495 5.64391 5.69339 5.72191 5.83987 5.92025 5.95829 6.02671 6.11881 6.25709 6.37703 6.66096 6.83630 6.90547 6.97613 7.26198 7.27211 7.60834 7.88926 8.04626 8.18834 8.68487 9.06773 9.58662 11.10453 Molecular weight = 286.20amu Principal moments of inertia in cm(-1) A = 0.018865 B = 0.003142 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.836237 B = 8908.781493 C = 9951.581997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.522 5.522 3 C 0.161 3.839 4 C -0.505 4.505 5 H 0.081 0.919 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.873 3.127 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.270 1.270 12 C 0.023 3.977 13 C 0.117 3.883 14 H 0.098 0.902 15 O -0.530 6.530 16 C 0.028 3.972 17 N -0.680 5.680 18 C 0.066 3.934 19 C -0.089 4.089 20 H 0.087 0.913 21 C -0.121 4.121 22 C -0.158 4.158 23 C 0.096 3.904 24 H 0.065 0.935 25 O -0.566 6.566 26 C -0.110 4.110 27 H 0.078 0.922 28 H 0.012 0.988 29 H 0.045 0.955 30 H -0.014 1.014 31 H 0.023 0.977 32 H 0.263 0.737 33 H 0.028 0.972 34 H 0.066 0.934 35 H 0.362 0.638 36 H 0.034 0.966 37 H 0.073 0.927 38 H 0.342 0.658 39 H 0.028 0.972 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.377 0.623 46 H 0.075 0.925 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.025 -14.359 16.021 25.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.245 5.245 3 C 0.035 3.965 4 C -0.543 4.543 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.540 5.540 8 Si 0.701 3.299 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.195 1.195 12 C -0.107 4.107 13 C 0.056 3.944 14 H 0.116 0.884 15 O -0.333 6.333 16 C -0.103 4.103 17 N -0.311 5.311 18 C -0.063 4.063 19 C -0.108 4.108 20 H 0.105 0.895 21 C -0.158 4.158 22 C -0.195 4.195 23 C 0.037 3.963 24 H 0.083 0.917 25 O -0.372 6.372 26 C -0.148 4.148 27 H 0.097 0.903 28 H 0.030 0.970 29 H 0.064 0.936 30 H 0.003 0.997 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.084 0.916 35 H 0.207 0.793 36 H 0.052 0.948 37 H 0.092 0.908 38 H 0.161 0.839 39 H 0.046 0.954 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.224 0.776 46 H 0.094 0.906 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.916 -14.846 14.926 24.698 hybrid contribution 0.388 1.791 2.286 2.929 sum 13.304 -13.055 17.211 25.371 Atomic orbital electron populations 1.22222 0.88104 0.98919 1.01571 1.61867 1.07046 1.16370 1.39245 1.20238 0.94903 0.84093 0.97246 1.21023 1.35411 0.97057 1.00829 0.90089 1.24901 0.95850 0.97379 0.95261 1.69896 1.47030 1.13257 1.23799 0.86894 0.81021 0.79353 0.82673 1.20081 1.21175 1.19478 1.22758 0.96155 0.98490 0.93290 1.21876 0.94280 0.93481 0.84734 0.88427 1.86694 1.76382 1.30396 1.39831 1.22725 0.89075 1.00571 0.97888 1.60372 1.02865 1.29694 1.38188 1.22037 0.93801 0.99216 0.91259 1.21744 0.94128 0.95962 0.98949 0.89491 1.22141 0.97926 0.97260 0.98522 1.23072 0.99737 0.97148 0.99588 1.22880 0.95735 0.94263 0.83446 0.91732 1.86496 1.44514 1.75523 1.30666 1.22341 0.94465 0.99314 0.98686 0.90349 0.96987 0.93572 0.99684 0.95865 0.92706 0.95349 0.91582 0.79270 0.94810 0.90821 0.83873 0.95432 0.91026 0.91085 0.91627 0.91497 0.90857 0.77565 0.90611 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 9.32 60.07 0.56 1.34 16 2 N -0.52 -11.02 4.66 -244.37 -1.14 -12.16 16 3 C 0.16 3.97 3.64 -4.97 -0.02 3.95 16 4 C -0.50 -14.63 9.14 -34.44 -0.31 -14.94 16 5 H 0.08 2.56 7.34 -52.49 -0.39 2.17 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 8 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 12 C 0.02 0.38 4.61 -3.83 -0.02 0.36 16 13 C 0.12 1.81 3.20 -26.73 -0.09 1.73 16 14 H 0.10 1.77 6.46 -51.93 -0.34 1.43 16 15 O -0.53 -8.88 13.23 -35.23 -0.47 -9.34 16 16 C 0.03 0.33 5.32 -3.82 -0.02 0.31 16 17 N -0.68 -7.91 6.45 -113.78 -0.73 -8.64 16 18 C 0.07 0.64 4.80 -3.82 -0.02 0.62 16 19 C -0.09 -0.76 3.16 -89.50 -0.28 -1.05 16 20 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 21 C -0.12 -1.01 5.96 -25.61 -0.15 -1.16 16 22 C -0.16 -1.17 6.55 -25.07 -0.16 -1.34 16 23 C 0.10 0.73 4.28 -24.70 -0.11 0.63 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 O -0.57 -4.62 13.45 -35.23 -0.47 -5.09 16 26 C -0.11 -0.90 6.09 -25.03 -0.15 -1.05 16 27 H 0.08 1.67 7.02 -51.93 -0.36 1.31 16 28 H 0.01 0.22 8.07 -51.93 -0.42 -0.20 16 29 H 0.05 0.74 7.88 -51.93 -0.41 0.33 16 30 H -0.01 -0.36 7.13 -51.93 -0.37 -0.73 16 31 H 0.02 0.57 5.77 -51.93 -0.30 0.28 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.03 0.46 8.05 -51.93 -0.42 0.04 16 34 H 0.07 0.92 7.82 -51.93 -0.41 0.52 16 35 H 0.36 4.65 9.05 45.56 0.41 5.06 16 36 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.34 4.09 7.44 -39.29 -0.29 3.79 16 39 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.59 6.93 -51.93 -0.36 0.23 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.38 1.51 9.11 45.56 0.42 1.92 16 46 H 0.08 0.67 7.85 -51.93 -0.41 0.27 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 367.14 15.07 5.53 5.53 Total: -1.00 -33.48 367.14 -9.08 -42.56 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -7.03 Total: 6.07 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -0.87 Total: -8.73 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -1.10 Total: -47.97 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.94 Total: -14.44 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.48 -9.08 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592431492.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.111 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds