Wall clock time and date at job start Tue Mar 31 2020 03:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99305 * 2 1 4 4 C 1.50702 * 109.47206 * 293.94981 * 3 2 1 5 5 H 1.07990 * 119.99891 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99588 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99568 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 120.00409 * 0.02562 * 6 4 3 9 9 H 1.48502 * 109.47442 * 89.99373 * 8 6 4 10 10 H 1.48498 * 109.47152 * 209.99930 * 8 6 4 11 11 H 1.48506 * 109.46689 * 329.99562 * 8 6 4 12 12 C 1.46899 * 110.99991 * 123.95060 * 2 1 3 13 13 C 1.52998 * 109.46858 * 163.94840 * 12 2 1 14 14 H 1.09003 * 109.47469 * 55.04211 * 13 12 2 15 15 O 1.42900 * 109.47173 * 295.04684 * 13 12 2 16 16 C 1.53000 * 109.47107 * 175.04575 * 13 12 2 17 17 N 1.46904 * 109.47085 * 184.99848 * 16 13 12 18 18 C 1.46902 * 110.99534 * 180.02562 * 17 16 13 19 19 C 1.53005 * 109.46751 * 180.02562 * 18 17 16 20 20 H 1.09004 * 110.01533 * 305.70009 * 19 18 17 21 21 C 1.53875 * 110.02981 * 67.08868 * 19 18 17 22 22 C 1.54273 * 106.59542 * 119.28836 * 21 19 18 23 23 C 1.54887 * 104.19529 * 23.60566 * 22 21 19 24 24 H 1.09003 * 110.75596 * 80.56300 * 23 22 21 25 25 O 1.42902 * 110.75274 * 203.74309 * 23 22 21 26 26 C 1.54261 * 110.03103 * 184.30873 * 19 18 17 27 27 H 1.08998 * 109.47439 * 65.32228 * 1 2 3 28 28 H 1.08994 * 109.47470 * 305.31641 * 1 2 3 29 29 H 1.09004 * 109.46549 * 185.31844 * 1 2 3 30 30 H 1.08997 * 109.47475 * 53.95587 * 3 2 1 31 31 H 1.09000 * 109.46537 * 173.95045 * 3 2 1 32 32 H 0.97003 * 119.99757 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47186 * 283.95255 * 12 2 1 34 34 H 1.08998 * 109.46913 * 43.95393 * 12 2 1 35 35 H 0.96698 * 114.00266 * 299.99986 * 15 13 12 36 36 H 1.08996 * 109.47256 * 305.00193 * 16 13 12 37 37 H 1.09001 * 109.46972 * 65.00325 * 16 13 12 38 38 H 1.00898 * 110.99815 * 56.05193 * 17 16 13 39 39 H 1.08997 * 109.47417 * 299.99878 * 18 17 16 40 40 H 1.08997 * 109.47488 * 60.00619 * 18 17 16 41 41 H 1.09000 * 110.03570 * 238.56621 * 21 19 18 42 42 H 1.08993 * 110.03570 * 359.95324 * 21 19 18 43 43 H 1.08996 * 110.48738 * 142.29120 * 22 21 19 44 44 H 1.09001 * 110.48171 * 264.79653 * 22 21 19 45 45 H 0.96700 * 114.00554 * 298.54180 * 25 23 22 46 46 H 1.08994 * 110.48771 * 335.78140 * 26 19 18 47 47 H 1.08998 * 110.48875 * 98.42799 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0266 3.3496 -1.5284 7 7 1.7141 3.9390 -2.6618 8 14 2.9995 4.2764 -0.2308 9 1 4.4520 4.0640 -0.4555 10 1 2.6912 5.7261 -0.3225 11 1 2.6288 3.7757 1.1172 12 6 1.9955 -0.7659 1.1376 13 6 3.4724 -1.0852 0.8977 14 1 4.0177 -0.1608 0.7072 15 8 3.5950 -1.9518 -0.2319 16 6 4.0527 -1.7741 2.1344 17 7 5.4967 -1.9729 1.9519 18 6 6.0891 -2.6340 3.1223 19 6 7.5905 -2.8228 2.8958 20 1 7.7628 -3.3520 1.9585 21 6 8.2951 -1.4552 2.8662 22 6 9.3154 -1.4601 4.0234 23 6 9.5986 -2.9621 4.2738 24 1 10.3168 -3.3458 3.5492 25 8 10.0656 -3.1739 5.6076 26 6 8.2068 -3.6121 4.0693 27 1 -0.3634 0.4290 -0.9338 28 1 -0.3634 0.5940 0.8385 29 1 -0.3632 -1.0233 0.0953 30 1 1.5610 1.9274 0.8309 31 1 3.0796 1.3445 0.1083 32 1 1.9886 4.8552 -2.8238 33 1 1.8943 -0.1776 2.0496 34 1 1.4350 -1.6951 1.2405 35 1 3.1332 -2.7955 -0.1323 36 1 3.8797 -1.1513 3.0120 37 1 3.5677 -2.7404 2.2732 38 1 5.9603 -1.0981 1.7572 39 1 5.9303 -2.0176 4.0071 40 1 5.6182 -3.6063 3.2676 41 1 8.8102 -1.3210 1.9150 42 1 7.5675 -0.6570 3.0124 43 1 10.2288 -0.9435 3.7288 44 1 8.8863 -0.9974 4.9121 45 1 10.8952 -2.7204 5.8106 46 1 7.5979 -3.4995 4.9662 47 1 8.3113 -4.6650 3.8077 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592431492.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:48 Heat of formation + Delta-G solvation = -135.580393 kcal Electronic energy + Delta-G solvation = -23097.792732 eV Core-core repulsion = 19699.623358 eV Total energy + Delta-G solvation = -3398.169374 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 286.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.10822 -39.43787 -37.58158 -36.76014 -35.15190 -34.59728 -31.59514 -30.28160 -29.78374 -28.86572 -26.77779 -25.19050 -24.05795 -22.86241 -21.66782 -21.57478 -20.60859 -19.06099 -18.31126 -17.64459 -17.12602 -16.84966 -16.54309 -16.28917 -15.93359 -15.74486 -15.28791 -15.09896 -14.79646 -14.60364 -14.47624 -14.34605 -13.84203 -13.74456 -13.29007 -13.09210 -13.01031 -12.77418 -12.62298 -12.59105 -12.40009 -12.28225 -12.03135 -11.87563 -11.68589 -11.60471 -11.57443 -11.43627 -11.37152 -10.83861 -10.78293 -10.66226 -9.34240 -8.96251 -8.28906 -6.31882 1.31484 1.33599 1.43523 2.32703 2.85619 3.03912 3.22478 3.47806 3.61865 3.65243 3.74706 3.93963 4.04841 4.16785 4.25235 4.28763 4.34389 4.42108 4.45934 4.53610 4.56942 4.59723 4.64078 4.69643 4.73004 4.75401 4.80722 4.88145 4.91958 4.99156 5.03254 5.08025 5.17504 5.20369 5.22739 5.32947 5.44590 5.54273 5.96585 6.06859 6.35051 6.39159 6.65952 6.74386 6.88236 7.13255 7.31198 8.88122 Molecular weight = 286.20amu Principal moments of inertia in cm(-1) A = 0.018865 B = 0.003142 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.836237 B = 8908.781493 C = 9951.581997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.544 5.544 3 C 0.173 3.827 4 C -0.515 4.515 5 H 0.035 0.965 6 C 0.005 3.995 7 N -0.949 5.949 8 Si 0.947 3.053 9 H -0.264 1.264 10 H -0.280 1.280 11 H -0.251 1.251 12 C 0.024 3.976 13 C 0.121 3.879 14 H 0.067 0.933 15 O -0.555 6.555 16 C 0.040 3.960 17 N -0.690 5.690 18 C 0.070 3.930 19 C -0.083 4.083 20 H 0.081 0.919 21 C -0.122 4.122 22 C -0.152 4.152 23 C 0.096 3.904 24 H 0.074 0.926 25 O -0.584 6.584 26 C -0.110 4.110 27 H 0.043 0.957 28 H 0.017 0.983 29 H 0.083 0.917 30 H -0.014 1.014 31 H 0.025 0.975 32 H 0.267 0.733 33 H 0.038 0.962 34 H 0.097 0.903 35 H 0.379 0.621 36 H 0.041 0.959 37 H 0.092 0.908 38 H 0.339 0.661 39 H 0.028 0.972 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.394 0.606 46 H 0.068 0.932 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.194 -15.334 18.578 27.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.267 5.267 3 C 0.046 3.954 4 C -0.554 4.554 5 H 0.054 0.946 6 C -0.192 4.192 7 N -0.590 5.590 8 Si 0.770 3.230 9 H -0.189 1.189 10 H -0.205 1.205 11 H -0.175 1.175 12 C -0.105 4.105 13 C 0.061 3.939 14 H 0.085 0.915 15 O -0.360 6.360 16 C -0.090 4.090 17 N -0.321 5.321 18 C -0.059 4.059 19 C -0.102 4.102 20 H 0.099 0.901 21 C -0.160 4.160 22 C -0.190 4.190 23 C 0.038 3.962 24 H 0.092 0.908 25 O -0.392 6.392 26 C -0.148 4.148 27 H 0.062 0.938 28 H 0.035 0.965 29 H 0.102 0.898 30 H 0.003 0.997 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.116 0.884 35 H 0.226 0.774 36 H 0.059 0.941 37 H 0.110 0.890 38 H 0.157 0.843 39 H 0.046 0.954 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.244 0.756 46 H 0.087 0.913 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.086 -15.855 17.504 27.499 hybrid contribution -0.022 1.997 1.413 2.446 sum 14.064 -13.859 18.917 27.344 Atomic orbital electron populations 1.22183 0.87286 1.01070 0.99943 1.61732 1.08043 1.14601 1.42358 1.19957 0.95002 0.85949 0.94483 1.21276 1.34769 0.97442 1.01870 0.94642 1.25881 0.97064 0.98470 0.97760 1.70059 1.48712 1.13911 1.26298 0.85725 0.79483 0.77737 0.80074 1.18940 1.20521 1.17486 1.22872 0.96861 0.99056 0.91666 1.21763 0.93580 0.92707 0.85887 0.91489 1.86646 1.76949 1.31569 1.40880 1.22553 0.89274 1.01144 0.96023 1.60387 1.02781 1.29630 1.39310 1.22040 0.94276 0.99115 0.90451 1.21665 0.93609 0.96078 0.98840 0.90095 1.22140 0.98023 0.96877 0.98928 1.23024 0.99878 0.97238 0.98843 1.22882 0.95610 0.94168 0.83583 0.90803 1.86450 1.45839 1.76061 1.30839 1.22324 0.94810 0.99581 0.98057 0.93790 0.96470 0.89811 0.99692 0.95658 0.92440 0.94416 0.88426 0.77366 0.94055 0.89002 0.84305 0.95364 0.90545 0.91151 0.92343 0.90331 0.91502 0.75606 0.91339 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.63 9.32 127.69 1.19 2.82 16 2 N -0.54 -22.50 4.66 -927.06 -4.32 -26.82 16 3 C 0.17 8.47 3.64 85.56 0.31 8.78 16 4 C -0.52 -30.74 9.14 25.60 0.23 -30.50 16 5 H 0.04 2.37 7.34 -2.92 -0.02 2.35 16 6 C 0.01 0.31 5.47 84.65 0.46 0.77 16 7 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 8 Si 0.95 44.67 27.47 68.60 1.88 46.56 16 9 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 12 C 0.02 0.73 4.61 86.30 0.40 1.13 16 13 C 0.12 3.55 3.20 30.59 0.10 3.64 16 14 H 0.07 2.38 6.46 -2.39 -0.02 2.36 16 15 O -0.56 -17.82 13.23 -148.98 -1.97 -19.79 16 16 C 0.04 0.86 5.32 86.30 0.46 1.32 16 17 N -0.69 -14.83 6.45 -513.88 -3.31 -18.14 16 18 C 0.07 1.21 4.80 86.30 0.41 1.63 16 19 C -0.08 -1.30 3.16 -10.07 -0.03 -1.33 16 20 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 21 C -0.12 -1.88 5.96 31.32 0.19 -1.69 16 22 C -0.15 -2.01 6.55 31.67 0.21 -1.80 16 23 C 0.10 1.30 4.28 31.91 0.14 1.44 16 24 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 25 O -0.58 -8.47 13.45 -148.98 -2.00 -10.47 16 26 C -0.11 -1.62 6.09 31.69 0.19 -1.43 16 27 H 0.04 1.93 7.02 -2.39 -0.02 1.91 16 28 H 0.02 0.61 8.07 -2.39 -0.02 0.59 16 29 H 0.08 2.49 7.88 -2.39 -0.02 2.47 16 30 H -0.01 -0.70 7.13 -2.39 -0.02 -0.72 16 31 H 0.03 1.23 5.77 -2.39 -0.01 1.22 16 32 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 33 H 0.04 1.10 8.05 -2.39 -0.02 1.08 16 34 H 0.10 2.34 7.82 -2.39 -0.02 2.32 16 35 H 0.38 8.92 9.05 -74.06 -0.67 8.25 16 36 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.34 7.70 7.44 -89.70 -0.67 7.03 16 39 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.06 0.98 6.93 -2.39 -0.02 0.97 16 43 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.39 2.40 9.11 -74.06 -0.67 1.72 16 46 H 0.07 1.11 7.85 -2.39 -0.02 1.10 16 47 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -73.72 367.14 -6.27 -79.99 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: -1.11 Total: 24.22 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 4.26 Total: -15.21 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -7.33 Total: -105.28 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -3.98 Total: -30.26 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.56 kcal Total: -73.72 -6.27 -79.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592431492.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.593 kcal (2) G-P(sol) polarization free energy of solvation -73.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds