Wall clock time and date at job start Tue Mar 31 2020 03:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42897 * 114.00831 * 2 1 4 4 C 1.52999 * 109.47531 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47311 * 302.86649 * 4 3 2 6 6 O 1.42904 * 109.47039 * 56.85219 * 5 4 3 7 7 C 1.42898 * 114.00440 * 180.02562 * 6 5 4 8 8 N 1.46893 * 109.47217 * 62.86979 * 4 3 2 9 9 C 1.46959 * 111.00141 * 55.48808 * 8 4 3 10 10 C 1.53049 * 109.36370 * 183.18828 * 9 8 4 11 11 N 1.46955 * 109.36676 * 301.59992 * 10 9 8 12 12 C 1.46905 * 110.99611 * 183.19065 * 11 10 9 13 13 C 1.52990 * 109.47588 * 46.20150 * 12 11 10 14 14 C 1.50705 * 109.47507 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99250 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00096 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99753 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00368 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46784 * 90.00221 * 18 16 14 20 20 H 1.48497 * 109.47323 * 210.00253 * 18 16 14 21 21 H 1.48495 * 109.46983 * 330.00716 * 18 16 14 22 22 C 1.46949 * 110.88053 * 59.31953 * 11 10 9 23 23 C 1.46955 * 111.00094 * 179.28950 * 8 4 3 24 24 H 1.09000 * 109.46753 * 59.99681 * 1 2 3 25 25 H 1.08994 * 109.47869 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47066 * 300.00494 * 1 2 3 27 27 H 1.09003 * 109.47022 * 59.99856 * 3 2 1 28 28 H 1.09004 * 109.47233 * 300.00088 * 3 2 1 29 29 H 1.09001 * 109.47054 * 182.86862 * 4 3 2 30 30 H 1.08995 * 109.47570 * 176.85429 * 5 4 3 31 31 H 1.09002 * 109.47238 * 296.85774 * 5 4 3 32 32 H 1.09007 * 109.46874 * 59.99559 * 7 6 5 33 33 H 1.08997 * 109.47440 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47142 * 300.00301 * 7 6 5 35 35 H 1.08996 * 109.48792 * 303.15726 * 9 8 4 36 36 H 1.08995 * 109.49056 * 63.22440 * 9 8 4 37 37 H 1.09003 * 109.49014 * 61.57197 * 10 9 8 38 38 H 1.09008 * 109.49007 * 181.62630 * 10 9 8 39 39 H 1.09005 * 109.46587 * 166.19959 * 12 11 10 40 40 H 1.08998 * 109.47028 * 286.19343 * 12 11 10 41 41 H 1.09005 * 109.47001 * 299.99556 * 13 12 11 42 42 H 1.08998 * 109.47595 * 59.99540 * 13 12 11 43 43 H 0.97003 * 119.99968 * 179.97438 * 17 16 14 44 44 H 1.09004 * 109.49150 * 180.70755 * 22 11 10 45 45 H 1.09007 * 109.48719 * 60.64806 * 22 11 10 46 46 H 1.09003 * 109.49173 * 296.77321 * 23 8 4 47 47 H 1.08997 * 109.49049 * 56.84462 * 23 8 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1844 0.0006 5 6 3.9816 0.3640 1.2125 6 8 3.3428 -0.9140 1.1838 7 6 3.6925 -1.7634 2.2784 8 7 3.9743 0.5159 -1.2316 9 6 3.4715 1.2192 -2.4200 10 6 3.8823 0.4490 -3.6771 11 7 5.3464 0.3301 -3.7192 12 6 5.7850 -0.3384 -4.9516 13 6 5.0475 0.2640 -6.1489 14 6 5.4980 -0.4214 -7.4132 15 1 6.2368 -1.2078 -7.3672 16 6 4.9677 -0.0438 -8.6286 17 7 5.3605 -0.6424 -9.7318 18 14 3.6903 1.3169 -8.7082 19 1 4.3712 2.6255 -8.8795 20 1 2.7824 1.0769 -9.8585 21 1 2.9021 1.3300 -7.4498 22 6 5.8491 -0.3731 -2.5309 23 6 5.4384 0.3971 -1.2736 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6887 1.8463 0.8900 28 1 1.6888 1.8463 -0.8900 29 1 3.9788 2.1789 0.0521 30 1 5.0629 0.2304 1.1829 31 1 3.7052 0.8878 2.1276 32 1 3.4098 -1.2835 3.2155 33 1 3.1670 -2.7136 2.1834 34 1 4.7679 -1.9411 2.2713 35 1 2.3845 1.2834 -2.3718 36 1 3.8942 2.2232 -2.4544 37 1 3.4371 -0.5458 -3.6559 38 1 3.5352 0.9841 -4.5612 39 1 6.8586 -0.1986 -5.0783 40 1 5.5626 -1.4035 -4.8861 41 1 3.9739 0.1243 -6.0222 42 1 5.2700 1.3291 -6.2144 43 1 4.9872 -0.3770 -10.5869 44 1 6.9362 -0.4374 -2.5791 45 1 5.4263 -1.3773 -2.4965 46 1 5.8836 1.3918 -1.2950 47 1 5.7854 -0.1381 -0.3898 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595535834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:22 Heat of formation + Delta-G solvation = -87.877588 kcal Electronic energy + Delta-G solvation = -24322.322768 eV Core-core repulsion = 20926.221943 eV Total energy + Delta-G solvation = -3396.100825 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 286.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.76677 -39.04969 -38.00134 -36.84097 -35.02353 -32.95180 -32.02789 -31.01540 -28.22927 -27.75927 -26.81690 -26.12554 -25.09981 -24.13786 -22.15982 -21.31726 -20.55517 -19.10020 -17.99751 -17.51697 -16.90325 -16.52874 -16.42880 -16.19500 -15.94626 -15.80552 -15.71915 -15.56090 -15.12692 -14.93679 -14.76583 -14.55629 -14.10728 -13.47002 -13.41330 -13.34145 -12.89936 -12.78115 -12.63802 -12.55900 -12.20989 -12.18933 -12.07733 -11.96729 -11.83654 -11.67980 -11.39808 -11.33530 -11.09650 -10.76753 -10.39586 -10.22298 -9.30722 -9.09836 -8.30767 -6.35393 1.35597 1.37439 1.49579 2.35659 2.75044 3.01822 3.04497 3.10042 3.12761 3.89005 3.95588 4.00183 4.12465 4.25454 4.36540 4.37905 4.41945 4.47440 4.47597 4.55314 4.59736 4.60175 4.62894 4.65353 4.67463 4.68922 4.74864 4.77987 4.89322 4.93822 4.95292 4.95924 4.98494 5.05157 5.09692 5.26950 5.46133 5.60198 6.01440 6.06334 6.19304 6.25929 6.31009 6.47191 6.61882 6.71957 7.29149 8.86091 Molecular weight = 286.20amu Principal moments of inertia in cm(-1) A = 0.023102 B = 0.003769 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.749966 B = 7427.491423 C = 8057.757569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.369 6.369 3 C 0.066 3.934 4 C 0.083 3.917 5 C 0.070 3.930 6 O -0.371 6.371 7 C 0.027 3.973 8 N -0.530 5.530 9 C 0.068 3.932 10 C 0.055 3.945 11 N -0.542 5.542 12 C 0.082 3.918 13 C -0.003 4.003 14 C -0.534 4.534 15 H 0.031 0.969 16 C 0.006 3.994 17 N -0.950 5.950 18 Si 0.953 3.047 19 H -0.265 1.265 20 H -0.282 1.282 21 H -0.247 1.247 22 C 0.057 3.943 23 C 0.067 3.933 24 H 0.036 0.964 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.039 0.961 35 H 0.085 0.915 36 H 0.043 0.957 37 H 0.021 0.979 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.013 0.987 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.267 0.733 44 H 0.084 0.916 45 H 0.024 0.976 46 H 0.044 0.956 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.348 6.201 28.302 29.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.287 6.287 3 C -0.011 4.011 4 C -0.024 4.024 5 C -0.007 4.007 6 O -0.289 6.289 7 C -0.070 4.070 8 N -0.256 5.256 9 C -0.060 4.060 10 C -0.073 4.073 11 N -0.267 5.267 12 C -0.045 4.045 13 C -0.041 4.041 14 C -0.573 4.573 15 H 0.049 0.951 16 C -0.191 4.191 17 N -0.591 5.591 18 Si 0.776 3.224 19 H -0.190 1.190 20 H -0.208 1.208 21 H -0.171 1.171 22 C -0.071 4.071 23 C -0.061 4.061 24 H 0.055 0.945 25 H 0.100 0.900 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.039 0.961 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.031 0.969 41 H 0.040 0.960 42 H 0.041 0.959 43 H 0.076 0.924 44 H 0.102 0.898 45 H 0.042 0.958 46 H 0.063 0.937 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.383 5.963 27.994 29.559 hybrid contribution -0.230 0.246 -0.662 0.743 sum -7.614 6.209 27.332 29.044 Atomic orbital electron populations 1.22780 0.81734 1.02683 0.99828 1.88228 1.18822 1.26565 1.95135 1.22610 0.92252 0.85773 1.00486 1.21951 0.94778 0.96100 0.89618 1.22565 0.96390 0.85345 0.96406 1.88239 1.68371 1.25830 1.46444 1.22779 0.99651 0.94935 0.89624 1.62036 1.10525 1.51831 1.01249 1.22116 1.00172 0.95081 0.88600 1.22187 0.87880 0.98954 0.98310 1.62325 1.10826 1.51394 1.02194 1.21819 0.99472 0.94548 0.88682 1.19552 0.95941 0.96245 0.92357 1.21405 1.23987 1.19821 0.92082 0.95092 1.26000 0.98921 0.99226 0.94961 1.70067 1.45685 1.44327 0.99020 0.85618 0.79078 0.79114 0.78602 1.18966 1.20818 1.17075 1.22175 1.00068 0.95235 0.89604 1.22136 0.87417 0.99389 0.97129 0.94527 0.90018 0.93452 0.91608 0.93228 0.89791 0.92869 0.91694 0.93586 0.90144 0.94246 0.89641 0.93858 0.96067 0.90792 0.91743 0.96896 0.96001 0.95921 0.92396 0.89750 0.95779 0.93747 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.37 -8.67 8.36 -127.11 -1.06 -9.74 16 3 C 0.07 1.21 5.16 71.98 0.37 1.58 16 4 C 0.08 1.56 2.34 44.91 0.10 1.66 16 5 C 0.07 1.20 5.32 71.98 0.38 1.59 16 6 O -0.37 -8.35 8.36 -127.11 -1.06 -9.41 16 7 C 0.03 0.44 11.01 113.37 1.25 1.68 16 8 N -0.53 -13.17 4.41 -870.51 -3.84 -17.01 16 9 C 0.07 1.82 5.22 86.31 0.45 2.27 16 10 C 0.06 1.88 4.93 86.31 0.43 2.31 16 11 N -0.54 -19.32 4.86 -895.71 -4.35 -23.67 16 12 C 0.08 3.53 5.22 86.30 0.45 3.98 16 13 C 0.00 -0.17 3.30 29.85 0.10 -0.07 16 14 C -0.53 -31.96 9.66 25.60 0.25 -31.71 16 15 H 0.03 2.03 7.99 -2.91 -0.02 2.00 16 16 C 0.01 0.35 5.47 84.65 0.46 0.81 16 17 N -0.95 -60.86 13.96 21.44 0.30 -60.56 16 18 Si 0.95 45.26 27.47 68.60 1.88 47.15 16 19 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 22 C 0.06 1.71 5.58 86.31 0.48 2.19 16 23 C 0.07 1.59 5.34 86.31 0.46 2.05 16 24 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.05 0.90 6.11 -2.39 -0.01 0.88 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 30 H 0.05 0.84 6.19 -2.39 -0.01 0.83 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.09 2.13 5.99 -2.39 -0.01 2.11 16 36 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 2.70 5.99 -2.38 -0.01 2.69 16 39 H 0.06 2.77 8.14 -2.38 -0.02 2.75 16 40 H 0.01 0.58 8.08 -2.39 -0.02 0.56 16 41 H 0.02 1.06 5.32 -2.38 -0.01 1.05 16 42 H 0.02 1.09 7.57 -2.39 -0.02 1.08 16 43 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 44 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 45 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 46 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.09 1.89 6.09 -2.39 -0.01 1.87 16 Total: -1.00 -71.50 357.48 -0.85 -72.34 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.86 Total: 10.84 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 6.43 Total: -9.94 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -7.90 Total: -101.25 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -2.12 Total: -19.15 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.15 kcal Total: -71.50 -0.85 -72.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595535834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.533 kcal (2) G-P(sol) polarization free energy of solvation -71.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds