Wall clock time and date at job start Tue Mar 31 2020 03:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47649 * 2 1 4 4 N 1.46906 * 109.46852 * 120.00004 * 2 1 3 5 5 C 1.46899 * 110.99729 * 298.95068 * 4 2 1 6 6 C 1.46901 * 110.99973 * 174.99868 * 4 2 1 7 7 C 1.53006 * 109.46902 * 288.08912 * 6 4 2 8 8 H 1.09000 * 109.47019 * 58.26749 * 7 6 4 9 9 O 1.42894 * 109.47004 * 298.26358 * 7 6 4 10 10 C 1.52999 * 109.47037 * 178.26368 * 7 6 4 11 11 N 1.46898 * 109.47192 * 184.99908 * 10 7 6 12 12 C 1.47841 * 110.99995 * 290.84506 * 11 10 7 13 13 C 1.54905 * 104.79804 * 213.63554 * 12 11 10 14 14 C 1.55140 * 101.65337 * 37.06923 * 13 12 11 15 15 O 1.42906 * 110.85412 * 82.79765 * 14 13 12 16 16 C 1.50697 * 110.71130 * 205.96577 * 14 13 12 17 17 H 1.07997 * 119.99950 * 113.59241 * 16 14 13 18 18 C 1.37879 * 119.99716 * 293.59988 * 16 14 13 19 19 N 1.31510 * 120.00089 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 119.99808 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47483 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46984 * 119.99984 * 20 18 16 23 23 H 1.48501 * 109.47282 * 239.99936 * 20 18 16 24 24 C 1.47440 * 110.99985 * 170.00062 * 11 10 7 25 25 H 1.09001 * 109.47088 * 300.00384 * 1 2 3 26 26 H 1.08998 * 109.46988 * 59.99907 * 1 2 3 27 27 H 1.08993 * 109.47381 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47088 * 239.99616 * 2 1 3 29 29 H 1.08998 * 109.46689 * 59.99657 * 3 2 1 30 30 H 1.08995 * 109.47453 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47001 * 300.00084 * 3 2 1 32 32 H 1.08997 * 109.47421 * 298.70360 * 5 4 2 33 33 H 1.08998 * 109.47418 * 58.70930 * 5 4 2 34 34 H 1.09003 * 109.46814 * 178.70479 * 5 4 2 35 35 H 1.09001 * 109.47046 * 168.09197 * 6 4 2 36 36 H 1.08998 * 109.47241 * 48.08564 * 6 4 2 37 37 H 0.96698 * 114.00624 * 300.00418 * 9 7 6 38 38 H 1.08997 * 109.47182 * 305.00647 * 10 7 6 39 39 H 1.09008 * 109.46964 * 64.99611 * 10 7 6 40 40 H 1.09007 * 110.37461 * 332.46373 * 12 11 10 41 41 H 1.08998 * 110.37804 * 94.80366 * 12 11 10 42 42 H 1.08996 * 110.98969 * 278.98098 * 13 12 11 43 43 H 1.09003 * 111.02725 * 155.17432 * 13 12 11 44 44 H 0.96696 * 113.99864 * 66.32151 * 15 14 13 45 45 H 0.96996 * 119.99961 * 179.97438 * 19 18 16 46 46 H 1.08996 * 109.88819 * 242.66392 * 24 11 10 47 47 H 1.09003 * 109.88846 * 3.85207 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5691 -0.0120 2.4209 6 6 3.4832 -0.8166 1.1752 7 6 3.8899 -1.8509 0.1237 8 1 3.5096 -1.5466 -0.8514 9 8 3.3434 -3.1245 0.4720 10 6 5.4158 -1.9487 0.0680 11 7 5.8092 -2.8516 -1.0219 12 6 5.4438 -4.2497 -0.7096 13 6 6.5608 -5.1049 -1.3581 14 6 7.8131 -4.2226 -1.1129 15 8 8.3324 -4.4305 0.2021 16 6 8.8704 -4.4977 -2.1509 17 1 9.1405 -3.7318 -2.8628 18 6 9.4928 -5.7274 -2.1918 19 7 9.1641 -6.6599 -1.3247 20 14 10.8028 -6.0687 -3.4789 21 1 10.9876 -4.8648 -4.3286 22 1 12.0841 -6.3998 -2.8053 23 1 10.3787 -7.2125 -4.3257 24 6 7.2626 -2.7886 -1.2616 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.9670 1.0026 2.4394 33 1 0.4799 0.0245 2.4359 34 1 1.9263 -0.5583 3.2939 35 1 3.8370 -1.1364 2.1554 36 1 3.9255 0.1480 0.9261 37 1 3.6393 -3.4582 1.3299 38 1 5.8370 -0.9593 -0.1098 39 1 5.7897 -2.3378 1.0152 40 1 5.4248 -4.4052 0.3691 41 1 4.4758 -4.4956 -1.1463 42 1 6.3804 -5.2389 -2.4246 43 1 6.6573 -6.0677 -0.8564 44 1 8.6909 -5.3167 0.3478 45 1 9.6017 -7.5251 -1.3538 46 1 7.4566 -2.4195 -2.2687 47 1 7.7314 -2.1333 -0.5275 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595561279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:15 Heat of formation + Delta-G solvation = -90.332121 kcal Electronic energy + Delta-G solvation = -24300.976126 eV Core-core repulsion = 20904.768865 eV Total energy + Delta-G solvation = -3396.207261 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 286.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.35625 -38.27536 -36.44406 -34.26968 -32.08565 -32.04428 -30.79210 -28.83866 -28.00521 -27.38022 -26.13105 -24.59246 -23.39138 -21.62754 -20.09641 -19.60891 -19.27852 -17.10140 -16.63044 -16.15831 -15.71467 -15.12766 -14.88181 -14.78993 -14.41657 -14.21841 -13.89731 -13.80227 -13.38542 -13.09675 -12.71972 -12.44638 -12.19967 -12.03954 -11.87819 -11.76999 -11.63190 -11.49032 -11.36804 -11.25692 -11.21387 -10.88808 -10.85771 -10.54369 -10.47529 -10.38921 -10.28684 -9.91361 -9.41567 -9.20475 -8.59167 -8.31777 -8.03822 -7.57403 -6.18773 -4.25468 3.23168 3.31665 3.36174 3.70161 4.32474 4.52536 4.66135 4.75578 4.85988 5.01120 5.08178 5.13776 5.16715 5.25488 5.38762 5.41710 5.41767 5.45791 5.54909 5.63186 5.67316 5.74410 5.80145 5.84200 5.93014 6.03263 6.12283 6.23522 6.25781 6.32850 6.38752 6.50284 6.73103 6.94517 6.98561 6.99599 7.19425 7.48773 7.54637 7.75171 7.83293 7.87315 7.98972 8.18124 8.76007 9.42269 9.54928 10.88508 Molecular weight = 286.20amu Principal moments of inertia in cm(-1) A = 0.039589 B = 0.003259 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.092152 B = 8589.167535 C = 8712.361734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 C -0.190 4.190 4 N -0.523 5.523 5 C 0.018 3.982 6 C 0.018 3.982 7 C 0.122 3.878 8 H 0.100 0.900 9 O -0.542 6.542 10 C 0.021 3.979 11 N -0.526 5.526 12 C 0.056 3.944 13 C -0.135 4.135 14 C 0.236 3.764 15 O -0.594 6.594 16 C -0.530 4.530 17 H 0.062 0.938 18 C 0.068 3.932 19 N -0.899 5.899 20 Si 0.900 3.100 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.057 3.943 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.026 0.974 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.365 0.635 38 H 0.070 0.930 39 H 0.035 0.965 40 H 0.033 0.967 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.383 0.617 45 H 0.266 0.734 46 H 0.078 0.922 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.794 11.927 5.648 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.036 4.036 3 C -0.248 4.248 4 N -0.246 5.246 5 C -0.130 4.130 6 C -0.110 4.110 7 C 0.061 3.939 8 H 0.118 0.882 9 O -0.346 6.346 10 C -0.109 4.109 11 N -0.250 5.250 12 C -0.071 4.071 13 C -0.174 4.174 14 C 0.195 3.805 15 O -0.404 6.404 16 C -0.569 4.569 17 H 0.080 0.920 18 C -0.133 4.133 19 N -0.540 5.540 20 Si 0.728 3.272 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.071 4.071 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.212 0.788 38 H 0.088 0.912 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.235 0.765 45 H 0.076 0.924 46 H 0.096 0.904 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -14.705 12.132 4.750 19.647 hybrid contribution 2.068 -0.215 0.566 2.155 sum -12.638 11.917 5.317 18.166 Atomic orbital electron populations 1.21842 0.94393 1.02521 1.01301 1.21752 0.95754 0.92061 0.94082 1.22494 1.01712 0.98384 1.02239 1.62160 1.10264 1.50374 1.01806 1.22460 1.01202 0.96700 0.92629 1.22920 0.88084 0.99315 1.00707 1.21859 0.91501 0.83058 0.97444 0.88197 1.86640 1.72560 1.34607 1.40743 1.22893 0.95669 0.98029 0.94263 1.63627 1.15768 1.07206 1.38360 1.23017 0.98920 0.87332 0.97832 1.23203 0.95270 0.98992 0.99901 1.19718 0.90265 0.88870 0.81631 1.86057 1.81838 1.39158 1.33328 1.21667 1.21028 0.98894 1.15308 0.91977 1.25012 0.96682 0.95716 0.95889 1.69599 1.42737 1.05207 1.36426 0.86406 0.81203 0.78292 0.81294 1.19667 1.20930 1.20868 1.22852 0.85459 0.98424 1.00333 0.92838 0.92426 0.91674 0.89504 0.92507 0.92327 0.91999 0.95592 0.91182 0.91719 0.90794 0.93541 0.78848 0.91161 0.94644 0.94900 0.91263 0.92037 0.91106 0.76514 0.92384 0.90412 0.93844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.99 37.16 0.33 -0.91 16 2 C 0.07 0.72 2.85 -67.71 -0.19 0.52 16 3 C -0.19 -1.66 8.53 37.16 0.32 -1.34 16 4 N -0.52 -5.60 4.60 -234.88 -1.08 -6.68 16 5 C 0.02 0.16 8.77 60.06 0.53 0.69 16 6 C 0.02 0.20 4.51 -3.82 -0.02 0.19 16 7 C 0.12 1.65 3.18 -26.73 -0.08 1.56 16 8 H 0.10 1.47 6.61 -51.93 -0.34 1.13 16 9 O -0.54 -7.98 10.71 -35.23 -0.38 -8.36 16 10 C 0.02 0.34 4.39 -3.83 -0.02 0.32 16 11 N -0.53 -10.26 5.16 -231.25 -1.19 -11.46 16 12 C 0.06 1.14 5.06 -2.30 -0.01 1.13 16 13 C -0.13 -3.20 5.67 -24.59 -0.14 -3.34 16 14 C 0.24 5.93 0.85 -89.95 -0.08 5.86 16 15 O -0.59 -15.64 13.09 -35.23 -0.46 -16.10 16 16 C -0.53 -14.42 8.21 -34.44 -0.28 -14.70 16 17 H 0.06 1.68 7.53 -52.49 -0.40 1.28 16 18 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 19 N -0.90 -24.29 10.69 55.43 0.59 -23.70 16 20 Si 0.90 20.89 29.54 -169.99 -5.02 15.86 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.06 1.25 6.22 -2.83 -0.02 1.24 16 25 H 0.05 0.42 6.40 -51.93 -0.33 0.09 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.99 6.50 -51.93 -0.34 0.65 16 29 H 0.06 0.47 6.41 -51.93 -0.33 0.14 16 30 H 0.06 0.55 6.30 -51.93 -0.33 0.22 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.03 0.22 6.35 -51.93 -0.33 -0.11 16 33 H 0.07 0.57 6.26 -51.93 -0.33 0.25 16 34 H 0.06 0.55 8.03 -51.93 -0.42 0.14 16 35 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 36 H 0.05 0.49 5.98 -51.93 -0.31 0.18 16 37 H 0.37 4.59 8.70 45.56 0.40 4.99 16 38 H 0.07 1.04 8.03 -51.93 -0.42 0.62 16 39 H 0.04 0.59 7.85 -51.92 -0.41 0.18 16 40 H 0.03 0.66 6.97 -51.93 -0.36 0.30 16 41 H 0.07 1.38 7.60 -51.93 -0.39 0.99 16 42 H 0.06 1.51 8.04 -51.93 -0.42 1.10 16 43 H 0.07 1.78 7.76 -51.93 -0.40 1.37 16 44 H 0.38 10.34 6.98 45.56 0.32 10.66 16 45 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 46 H 0.08 1.73 7.63 -51.93 -0.40 1.33 16 47 H 0.04 0.95 7.47 -51.93 -0.39 0.56 16 LS Contribution 351.68 15.07 5.30 5.30 Total: -1.00 -28.35 351.68 -8.74 -37.08 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -6.74 Total: 15.10 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 0.24 Total: -7.05 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: -1.68 Total: -41.84 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.84 Total: -24.46 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.35 -8.74 -37.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595561279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.251 kcal (2) G-P(sol) polarization free energy of solvation -28.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds