Wall clock time and date at job start Tue Mar 31 2020 03:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99797 * 2 1 4 4 C 1.53002 * 109.46919 * 180.02562 * 3 2 1 5 5 O 1.42905 * 109.47079 * 64.99630 * 4 3 2 6 6 C 1.42899 * 113.99778 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47163 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99645 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00352 * 180.02562 * 7 6 5 10 10 C 1.47083 * 120.88068 * 359.71985 * 9 7 6 11 11 C 1.53696 * 108.27451 * 128.75374 * 10 9 7 12 12 N 1.46900 * 109.25519 * 54.08549 * 11 10 9 13 13 C 1.46901 * 110.99770 * 172.60333 * 12 11 10 14 14 C 1.50700 * 109.47368 * 294.30420 * 13 12 11 15 15 H 1.08004 * 119.99824 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99996 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00473 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99865 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47414 * 59.99856 * 18 16 14 20 20 H 1.48499 * 109.46962 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47112 * 299.99609 * 18 16 14 22 22 C 1.46891 * 111.26978 * 296.75546 * 12 11 10 23 23 C 1.47081 * 120.88156 * 180.02562 * 9 7 6 24 24 H 1.08997 * 109.47421 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47133 * 300.00285 * 1 2 3 26 26 H 1.09009 * 109.46982 * 60.00047 * 1 2 3 27 27 H 1.08997 * 109.47344 * 60.00163 * 3 2 1 28 28 H 1.09005 * 109.47192 * 299.99621 * 3 2 1 29 29 H 1.09004 * 109.46930 * 304.99857 * 4 3 2 30 30 H 1.09000 * 109.47312 * 184.99800 * 4 3 2 31 31 H 1.08997 * 109.47442 * 300.00036 * 6 5 4 32 32 H 1.08997 * 109.47171 * 60.00232 * 6 5 4 33 33 H 1.08996 * 109.63006 * 248.52418 * 10 9 7 34 34 H 1.09007 * 109.62462 * 9.10488 * 10 9 7 35 35 H 1.08999 * 109.64964 * 294.07742 * 11 10 9 36 36 H 1.09002 * 109.41493 * 173.95116 * 11 10 9 37 37 H 1.08998 * 109.47215 * 54.30323 * 13 12 11 38 38 H 1.09003 * 109.46749 * 174.30113 * 13 12 11 39 39 H 0.96998 * 120.00539 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.49053 * 303.14426 * 22 12 11 41 41 H 1.08996 * 109.49604 * 183.06856 * 22 12 11 42 42 H 1.08994 * 109.62895 * 350.89212 * 23 9 7 43 43 H 1.09000 * 109.62996 * 111.47654 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9648 0.5796 -1.2220 6 6 5.3811 0.4190 -1.3246 7 6 5.7194 -0.2243 -2.6447 8 8 4.8348 -0.5161 -3.4214 9 7 7.0049 -0.4754 -2.9622 10 6 8.0934 -0.1239 -2.0375 11 6 8.9804 -1.3641 -1.8437 12 7 9.4167 -1.8576 -3.1568 13 6 10.4062 -2.9337 -3.0125 14 6 11.6637 -2.3803 -2.3933 15 1 11.7222 -1.3336 -2.1334 16 6 12.7398 -3.2099 -2.1596 17 7 12.6688 -4.4843 -2.4765 18 14 14.2989 -2.5236 -1.3927 19 1 13.9854 -1.9575 -0.0562 20 1 15.2990 -3.6116 -1.2468 21 1 14.8514 -1.4565 -2.2652 22 6 8.2736 -2.2986 -3.9670 23 6 7.3571 -1.1019 -4.2454 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8901 29 1 3.8514 0.5682 0.8410 30 1 3.9786 2.1765 0.0889 31 1 5.8628 1.3948 -1.2623 32 1 5.7350 -0.2135 -0.5105 33 1 8.6835 0.6898 -2.4589 34 1 7.6748 0.1819 -1.0786 35 1 8.4150 -2.1428 -1.3319 36 1 9.8528 -1.0960 -1.2476 37 1 10.0003 -3.7170 -2.3723 38 1 10.6366 -3.3493 -3.9935 39 1 13.4258 -5.0680 -2.3118 40 1 7.7180 -3.0643 -3.4257 41 1 8.6332 -2.7085 -4.9108 42 1 6.4515 -1.4431 -4.7470 43 1 7.8778 -0.3802 -4.8747 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602208494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:45 Heat of formation + Delta-G solvation = -109.992257 kcal Electronic energy + Delta-G solvation = -22859.898633 eV Core-core repulsion = 19327.005750 eV Total energy + Delta-G solvation = -3532.892883 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.03725 -38.58150 -37.66141 -36.90502 -34.40803 -32.48186 -31.27780 -30.60645 -28.65200 -27.38804 -26.44846 -25.22976 -23.28160 -22.81584 -22.04728 -20.64756 -18.73170 -17.52009 -17.11080 -16.79691 -16.39061 -16.05838 -15.90467 -15.41097 -15.12942 -14.75567 -14.63361 -14.42715 -13.89712 -13.78188 -13.63669 -13.10582 -12.72125 -12.58855 -12.32831 -12.17607 -11.91390 -11.67695 -11.34080 -11.30553 -11.08455 -10.99243 -10.77302 -10.63803 -10.56266 -9.98331 -9.91176 -9.89859 -9.55429 -9.31459 -8.52485 -8.44260 -7.35283 -6.07969 -4.10440 2.69586 2.74721 3.29129 3.34204 3.36081 3.48396 3.71117 4.36646 4.52373 4.71340 4.75594 4.85884 4.93127 5.01600 5.05249 5.07118 5.12920 5.18396 5.24574 5.28485 5.37084 5.40958 5.42853 5.50559 5.62695 5.74580 5.84792 6.02653 6.27648 6.42719 6.42987 6.62104 6.81788 6.93820 7.19907 7.26139 7.52174 7.71660 7.99279 8.09848 8.28582 8.45027 8.96340 9.54096 11.02761 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.028571 B = 0.002832 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.769973 B = 9882.938377 C =10275.846837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.064 3.936 4 C 0.061 3.939 5 O -0.356 6.356 6 C 0.046 3.954 7 C 0.515 3.485 8 O -0.529 6.529 9 N -0.608 5.608 10 C 0.108 3.892 11 C 0.049 3.951 12 N -0.536 5.536 13 C 0.194 3.806 14 C -0.511 4.511 15 H 0.063 0.937 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.041 3.959 23 C 0.120 3.880 24 H 0.086 0.914 25 H 0.039 0.961 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.026 0.974 36 H 0.098 0.902 37 H -0.009 1.009 38 H 0.032 0.968 39 H 0.263 0.737 40 H 0.027 0.973 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.806 12.541 5.942 22.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.274 6.274 6 C -0.034 4.034 7 C 0.302 3.698 8 O -0.405 6.405 9 N -0.344 5.344 10 C -0.015 4.015 11 C -0.080 4.080 12 N -0.261 5.261 13 C 0.069 3.931 14 C -0.549 4.549 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.727 3.273 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.089 4.089 23 C -0.002 4.002 24 H 0.105 0.895 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.044 0.956 36 H 0.116 0.884 37 H 0.009 0.991 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.045 0.955 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.975 12.363 5.133 22.412 hybrid contribution 0.653 -0.132 1.143 1.323 sum -17.322 12.231 6.276 22.114 Atomic orbital electron populations 1.22745 0.81089 1.02930 0.99750 1.87995 1.19584 1.27145 1.95337 1.22537 0.92197 0.85672 1.00873 1.22596 0.93676 0.97623 0.87730 1.88075 1.19700 1.82044 1.37564 1.22245 0.83810 1.00766 0.96606 1.20136 0.82399 0.79300 0.87983 1.90699 1.46462 1.51998 1.51331 1.48175 1.05296 1.60936 1.19974 1.22142 0.88134 0.98941 0.92312 1.22417 0.98327 0.94658 0.92585 1.62076 1.11159 1.39009 1.13871 1.19727 0.89108 0.87291 0.96986 1.21091 0.97865 0.95642 1.40352 0.91853 1.25000 0.98873 0.94807 0.95905 1.69944 1.31580 1.04163 1.47954 0.86547 0.82630 0.78477 0.79650 1.20280 1.21368 1.20130 1.22420 0.92248 0.94942 0.99266 1.21765 0.98896 0.95196 0.84339 0.89547 0.94282 0.93977 0.91729 0.92263 0.92124 0.91530 0.90346 0.90157 0.90297 0.90464 0.95578 0.88391 0.99077 0.94984 0.92777 0.95452 0.89962 0.89339 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.48 10.67 -40.09 -0.43 -4.91 16 3 C 0.06 0.57 6.32 37.16 0.23 0.81 16 4 C 0.06 0.56 6.32 37.16 0.23 0.80 16 5 O -0.36 -4.90 9.84 -59.73 -0.59 -5.49 16 6 C 0.05 0.55 4.78 36.00 0.17 0.72 16 7 C 0.51 8.19 7.78 -10.99 -0.09 8.11 16 8 O -0.53 -10.50 15.95 -14.36 -0.23 -10.73 16 9 N -0.61 -9.28 3.00 -172.15 -0.52 -9.80 16 10 C 0.11 1.47 6.53 -3.36 -0.02 1.44 16 11 C 0.05 0.87 5.47 -3.46 -0.02 0.86 16 12 N -0.54 -11.01 4.62 -235.45 -1.09 -12.10 16 13 C 0.19 4.88 4.72 -4.98 -0.02 4.86 16 14 C -0.51 -13.75 8.41 -34.44 -0.29 -14.04 16 15 H 0.06 1.65 7.13 -52.48 -0.37 1.28 16 16 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.15 13.29 55.43 0.74 -25.42 16 18 Si 0.90 20.96 29.54 -169.99 -5.02 15.93 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 C 0.04 0.73 5.62 -3.68 -0.02 0.71 16 23 C 0.12 1.91 6.60 -3.58 -0.02 1.88 16 24 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.04 0.30 8.14 -51.92 -0.42 -0.12 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.71 7.99 -51.93 -0.41 0.29 16 32 H 0.08 0.84 7.67 -51.93 -0.40 0.44 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.08 0.80 6.02 -51.93 -0.31 0.48 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 1.82 6.67 -51.93 -0.35 1.48 16 37 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 38 H 0.03 0.87 7.97 -51.93 -0.41 0.45 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.08 1.43 7.99 -51.93 -0.41 1.02 16 42 H 0.09 1.42 7.06 -51.93 -0.37 1.05 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 351.75 15.07 5.30 5.30 Total: -1.00 -34.20 351.75 -7.91 -42.11 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -7.25 Total: -3.87 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 1.17 Total: 8.95 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.87 Total: -47.31 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -1.24 Total: -21.12 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.20 -7.91 -42.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602208494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.881 kcal (2) G-P(sol) polarization free energy of solvation -34.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds