Wall clock time and date at job start Tue Mar 31 2020 02:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00484 * 2 1 4 4 C 1.53000 * 109.47638 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46865 * 64.99622 * 4 3 2 6 6 C 1.46500 * 120.00266 * 270.00356 * 5 4 3 7 7 C 1.50694 * 109.47306 * 95.87613 * 6 5 4 8 8 H 1.08002 * 119.99738 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00190 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00138 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00018 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47613 * 90.00091 * 11 9 7 13 13 H 1.48503 * 109.47006 * 210.00240 * 11 9 7 14 14 H 1.48503 * 109.47034 * 329.99934 * 11 9 7 15 15 C 1.34780 * 119.99436 * 90.00325 * 5 4 3 16 16 O 1.21271 * 120.00291 * 355.33460 * 15 5 4 17 17 C 1.50700 * 119.99642 * 175.33197 * 15 5 4 18 18 H 1.09002 * 109.50748 * 31.62326 * 17 15 5 19 19 C 1.53104 * 109.50749 * 271.54357 * 17 15 5 20 20 O 1.43025 * 109.25758 * 183.26242 * 19 17 15 21 21 C 1.43016 * 113.77347 * 58.59957 * 20 19 17 22 22 C 1.53102 * 109.25731 * 301.35537 * 21 20 19 23 23 N 1.47010 * 109.50742 * 151.71629 * 17 15 5 24 24 C 1.46897 * 110.99833 * 302.32712 * 23 17 15 25 25 H 1.09000 * 109.47054 * 59.99668 * 1 2 3 26 26 H 1.08999 * 109.47194 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47252 * 300.00586 * 1 2 3 28 28 H 1.09002 * 109.47136 * 299.99813 * 3 2 1 29 29 H 1.09002 * 109.46905 * 59.99497 * 3 2 1 30 30 H 1.08994 * 109.47284 * 184.99957 * 4 3 2 31 31 H 1.09004 * 109.46590 * 304.99934 * 4 3 2 32 32 H 1.09002 * 109.46940 * 215.88057 * 6 5 4 33 33 H 1.09002 * 109.46904 * 335.87462 * 6 5 4 34 34 H 0.97001 * 120.00007 * 179.97438 * 10 9 7 35 35 H 1.09004 * 109.50558 * 303.15192 * 19 17 15 36 36 H 1.09000 * 109.50725 * 63.27894 * 19 17 15 37 37 H 1.08998 * 109.50616 * 181.42107 * 21 20 19 38 38 H 1.09004 * 109.54317 * 61.30819 * 21 20 19 39 39 H 1.08998 * 109.50430 * 296.91283 * 22 21 20 40 40 H 1.09011 * 109.53881 * 176.80545 * 22 21 20 41 41 H 1.09001 * 109.47304 * 63.93054 * 24 23 17 42 42 H 1.09005 * 109.47022 * 183.93157 * 24 23 17 43 43 H 1.09000 * 109.46950 * 303.92793 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.1062 -0.8927 -1.3403 7 6 2.8499 -1.4731 -1.9367 8 1 2.0365 -0.8221 -2.2212 9 6 2.7393 -2.8351 -2.1203 10 7 3.7300 -3.6279 -1.7743 11 14 1.1823 -3.5544 -2.8603 12 1 1.3194 -3.6171 -4.3376 13 1 0.9660 -4.9225 -2.3248 14 1 0.0236 -2.6955 -2.5067 15 6 4.2634 1.3328 -2.3200 16 8 4.0757 2.5300 -2.2737 17 6 4.8172 0.7048 -3.5730 18 1 4.4210 -0.3050 -3.6798 19 6 6.3446 0.6478 -3.4842 20 8 6.8689 0.1215 -4.7064 21 6 6.5098 0.8824 -5.8628 22 6 4.9840 0.9407 -5.9751 23 7 4.4282 1.5108 -4.7393 24 6 2.9674 1.6370 -4.8283 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 1.6886 1.8463 0.8900 30 1 3.9785 2.1764 0.0902 31 1 3.8507 0.5684 0.8428 32 1 4.9581 -1.1436 -1.9723 33 1 4.2595 -1.3057 -0.3432 34 1 3.6521 -4.5861 -1.9031 35 1 6.7375 1.6517 -3.3228 36 1 6.6372 0.0041 -2.6547 37 1 6.9225 0.4081 -6.7532 38 1 6.9069 1.8935 -5.7717 39 1 4.5911 -0.0655 -6.1208 40 1 4.7045 1.5669 -6.8226 41 1 2.5962 2.1822 -3.9604 42 1 2.7041 2.1782 -5.7372 43 1 2.5178 0.6444 -4.8534 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611565626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:37 Heat of formation + Delta-G solvation = -104.303490 kcal Electronic energy + Delta-G solvation = -25246.158456 eV Core-core repulsion = 21713.512256 eV Total energy + Delta-G solvation = -3532.646200 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.04203 -38.34326 -37.05635 -35.30168 -34.74819 -32.54512 -31.38592 -29.56313 -28.34794 -26.94953 -25.73164 -24.45004 -23.85250 -22.81407 -22.37878 -20.29993 -18.32750 -16.80401 -16.65989 -16.10674 -15.94939 -15.61364 -15.49214 -14.99458 -14.74630 -14.53021 -14.40835 -14.11531 -13.54810 -13.52733 -13.35468 -12.55076 -12.44329 -12.13338 -11.93755 -11.79089 -11.52413 -11.40901 -11.37322 -11.25446 -10.90338 -10.85727 -10.80668 -10.49356 -10.36729 -10.03271 -9.60255 -9.54344 -9.07697 -8.83532 -8.44318 -7.99151 -7.70259 -6.05612 -4.06544 3.23830 3.26299 3.33896 3.37013 3.70956 4.04814 4.32992 4.41783 4.45899 5.10659 5.20424 5.29113 5.31678 5.39526 5.47332 5.58199 5.61452 5.66372 5.76437 5.79534 5.81442 5.82217 5.86283 5.92484 6.02230 6.05669 6.09948 6.18953 6.30000 6.35001 6.37769 6.79801 7.11260 7.24066 7.26891 7.35235 7.59314 7.80549 7.90754 8.19475 8.32868 8.90432 9.04369 9.56559 11.02636 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.013577 B = 0.007764 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.777853 B = 3605.389651 C = 4536.924521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.346 6.346 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.590 5.590 6 C 0.239 3.761 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.061 3.939 10 N -0.896 5.896 11 Si 0.890 3.110 12 H -0.284 1.284 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.527 3.473 16 O -0.558 6.558 17 C 0.028 3.972 18 H 0.100 0.900 19 C 0.082 3.918 20 O -0.378 6.378 21 C 0.063 3.937 22 C 0.017 3.983 23 N -0.520 5.520 24 C 0.024 3.976 25 H 0.030 0.970 26 H 0.080 0.920 27 H 0.027 0.973 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.262 0.738 35 H 0.058 0.942 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.448 7.974 -2.391 8.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.264 6.264 3 C -0.030 4.030 4 C 0.001 3.999 5 N -0.321 5.321 6 C 0.120 3.880 7 C -0.541 4.541 8 H 0.080 0.920 9 C -0.140 4.140 10 N -0.536 5.536 11 Si 0.718 3.282 12 H -0.210 1.210 13 H -0.213 1.213 14 H -0.200 1.200 15 C 0.314 3.686 16 O -0.438 6.438 17 C -0.083 4.083 18 H 0.117 0.883 19 C 0.004 3.996 20 O -0.296 6.296 21 C -0.014 4.014 22 C -0.111 4.111 23 N -0.246 5.246 24 C -0.124 4.124 25 H 0.049 0.951 26 H 0.098 0.902 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.122 0.878 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.830 8.509 -2.282 8.849 hybrid contribution -1.888 -1.027 -0.481 2.202 sum -1.058 7.482 -2.763 8.046 Atomic orbital electron populations 1.22594 0.83066 1.02100 0.98347 1.88305 1.17647 1.25568 1.94876 1.22849 0.95005 0.85969 0.99135 1.21327 0.92233 0.98867 0.87451 1.48246 1.63674 1.09909 1.10288 1.19491 0.97530 0.72460 0.98532 1.21322 1.01064 0.91722 1.39944 0.92029 1.24861 0.96198 0.96999 0.95934 1.69914 1.31353 1.04181 1.48164 0.86631 0.84002 0.78435 0.79114 1.21000 1.21292 1.19953 1.19977 0.77981 0.86366 0.84304 1.90580 1.55115 1.15261 1.82808 1.22381 0.97507 0.98346 0.90086 0.88287 1.22502 0.90177 0.99629 0.87273 1.88015 1.73788 1.52927 1.14890 1.22651 0.93474 0.96369 0.88929 1.22816 0.96248 0.99047 0.93017 1.62008 1.11734 1.49503 1.01336 1.22409 0.86719 1.00540 1.02730 0.95114 0.90159 0.95450 0.93718 0.94057 0.89809 0.90138 0.94898 0.94367 0.92856 0.92337 0.87812 0.88658 0.92472 0.93643 0.89803 0.90412 0.91914 0.95072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 11.01 101.05 1.11 1.71 16 2 O -0.35 -6.95 8.08 -35.23 -0.28 -7.23 16 3 C 0.05 0.86 6.28 37.16 0.23 1.09 16 4 C 0.13 2.24 5.82 -4.04 -0.02 2.22 16 5 N -0.59 -12.20 2.44 -175.06 -0.43 -12.63 16 6 C 0.24 5.63 4.66 -5.20 -0.02 5.60 16 7 C -0.50 -12.86 6.99 -34.44 -0.24 -13.10 16 8 H 0.06 1.64 7.18 -52.49 -0.38 1.26 16 9 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 10 N -0.90 -25.00 13.29 55.43 0.74 -24.27 16 11 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 15 C 0.53 10.91 5.82 -10.98 -0.06 10.85 16 16 O -0.56 -12.32 15.01 5.57 0.08 -12.24 16 17 C 0.03 0.55 1.55 -68.75 -0.11 0.44 16 18 H 0.10 2.22 6.06 -51.93 -0.31 1.91 16 19 C 0.08 1.45 6.16 37.21 0.23 1.68 16 20 O -0.38 -6.56 10.83 -35.23 -0.38 -6.94 16 21 C 0.06 0.88 7.01 37.21 0.26 1.14 16 22 C 0.02 0.26 5.65 -3.71 -0.02 0.23 16 23 N -0.52 -9.29 4.53 -235.96 -1.07 -10.36 16 24 C 0.02 0.42 9.14 60.06 0.55 0.97 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.40 7.49 -51.93 -0.39 1.01 16 31 H 0.08 1.37 7.86 -51.93 -0.41 0.96 16 32 H 0.03 0.81 5.82 -51.93 -0.30 0.50 16 33 H 0.04 0.96 7.83 -51.93 -0.41 0.55 16 34 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.10 1.82 7.35 -51.93 -0.38 1.44 16 37 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.08 1.03 8.11 -51.92 -0.42 0.61 16 41 H 0.08 1.50 6.35 -51.93 -0.33 1.17 16 42 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 342.42 15.07 5.16 5.16 Total: -1.00 -30.15 342.42 -6.51 -36.65 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.11 Total: 1.51 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 1.81 Total: 14.38 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.76 Total: -47.26 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.58 Total: -26.42 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.15 -6.51 -36.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611565626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.649 kcal (2) G-P(sol) polarization free energy of solvation -30.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds