Wall clock time and date at job start Tue Mar 31 2020 02:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00484 * 2 1 4 4 C 1.53000 * 109.47638 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46865 * 64.99622 * 4 3 2 6 6 C 1.46500 * 120.00266 * 270.00356 * 5 4 3 7 7 C 1.50694 * 109.47306 * 95.87613 * 6 5 4 8 8 H 1.08002 * 119.99738 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00190 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00138 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00018 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47613 * 90.00091 * 11 9 7 13 13 H 1.48503 * 109.47006 * 210.00240 * 11 9 7 14 14 H 1.48503 * 109.47034 * 329.99934 * 11 9 7 15 15 C 1.34780 * 119.99436 * 90.00325 * 5 4 3 16 16 O 1.21271 * 120.00291 * 355.33460 * 15 5 4 17 17 C 1.50700 * 119.99642 * 175.33197 * 15 5 4 18 18 H 1.09002 * 109.50748 * 31.62326 * 17 15 5 19 19 C 1.53104 * 109.50749 * 271.54357 * 17 15 5 20 20 O 1.43025 * 109.25758 * 183.26242 * 19 17 15 21 21 C 1.43016 * 113.77347 * 58.59957 * 20 19 17 22 22 C 1.53102 * 109.25731 * 301.35537 * 21 20 19 23 23 N 1.47010 * 109.50742 * 151.71629 * 17 15 5 24 24 C 1.46897 * 110.99833 * 302.32712 * 23 17 15 25 25 H 1.09000 * 109.47054 * 59.99668 * 1 2 3 26 26 H 1.08999 * 109.47194 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47252 * 300.00586 * 1 2 3 28 28 H 1.09002 * 109.47136 * 299.99813 * 3 2 1 29 29 H 1.09002 * 109.46905 * 59.99497 * 3 2 1 30 30 H 1.08994 * 109.47284 * 184.99957 * 4 3 2 31 31 H 1.09004 * 109.46590 * 304.99934 * 4 3 2 32 32 H 1.09002 * 109.46940 * 215.88057 * 6 5 4 33 33 H 1.09002 * 109.46904 * 335.87462 * 6 5 4 34 34 H 0.97001 * 120.00007 * 179.97438 * 10 9 7 35 35 H 1.09004 * 109.50558 * 303.15192 * 19 17 15 36 36 H 1.09000 * 109.50725 * 63.27894 * 19 17 15 37 37 H 1.08998 * 109.50616 * 181.42107 * 21 20 19 38 38 H 1.09004 * 109.54317 * 61.30819 * 21 20 19 39 39 H 1.08998 * 109.50430 * 296.91283 * 22 21 20 40 40 H 1.09011 * 109.53881 * 176.80545 * 22 21 20 41 41 H 1.09001 * 109.47304 * 63.93054 * 24 23 17 42 42 H 1.09005 * 109.47022 * 183.93157 * 24 23 17 43 43 H 1.09000 * 109.46950 * 303.92793 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.1062 -0.8927 -1.3403 7 6 2.8499 -1.4731 -1.9367 8 1 2.0365 -0.8221 -2.2212 9 6 2.7393 -2.8351 -2.1203 10 7 3.7300 -3.6279 -1.7743 11 14 1.1823 -3.5544 -2.8603 12 1 1.3194 -3.6171 -4.3376 13 1 0.9660 -4.9225 -2.3248 14 1 0.0236 -2.6955 -2.5067 15 6 4.2634 1.3328 -2.3200 16 8 4.0757 2.5300 -2.2737 17 6 4.8172 0.7048 -3.5730 18 1 4.4210 -0.3050 -3.6798 19 6 6.3446 0.6478 -3.4842 20 8 6.8689 0.1215 -4.7064 21 6 6.5098 0.8824 -5.8628 22 6 4.9840 0.9407 -5.9751 23 7 4.4282 1.5108 -4.7393 24 6 2.9674 1.6370 -4.8283 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 1.6886 1.8463 0.8900 30 1 3.9785 2.1764 0.0902 31 1 3.8507 0.5684 0.8428 32 1 4.9581 -1.1436 -1.9723 33 1 4.2595 -1.3057 -0.3432 34 1 3.6521 -4.5861 -1.9031 35 1 6.7375 1.6517 -3.3228 36 1 6.6372 0.0041 -2.6547 37 1 6.9225 0.4081 -6.7532 38 1 6.9069 1.8935 -5.7717 39 1 4.5911 -0.0655 -6.1208 40 1 4.7045 1.5669 -6.8226 41 1 2.5962 2.1822 -3.9604 42 1 2.7041 2.1782 -5.7372 43 1 2.5178 0.6444 -4.8534 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611565626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:36 Heat of formation + Delta-G solvation = -126.193625 kcal Electronic energy + Delta-G solvation = -25247.107684 eV Core-core repulsion = 21713.512256 eV Total energy + Delta-G solvation = -3533.595427 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.56707 -39.79350 -38.52712 -36.78147 -36.39143 -34.50313 -32.80142 -31.03693 -29.75791 -28.79061 -27.12616 -25.88572 -25.22681 -24.72393 -23.77942 -21.66841 -19.93313 -18.70220 -18.25763 -17.57087 -17.43985 -17.03754 -16.99141 -16.41586 -16.28960 -16.21122 -15.84228 -15.57129 -15.08435 -15.02573 -14.77796 -14.31721 -13.93872 -13.65619 -13.52442 -13.26753 -13.14100 -12.95499 -12.80232 -12.70962 -12.65737 -12.54780 -12.21311 -12.09659 -11.87108 -11.67467 -11.50581 -10.95380 -10.61321 -10.46368 -10.34182 -9.50474 -9.38074 -8.10756 -6.16483 1.36866 1.39359 1.47859 1.62191 2.16188 2.44802 2.73074 2.97950 3.03929 3.23832 3.68820 3.81959 3.98037 4.10583 4.18947 4.21726 4.27529 4.28996 4.40499 4.50111 4.52915 4.54465 4.55699 4.58740 4.66211 4.70062 4.83634 4.85466 4.86328 4.92707 4.96618 5.00755 5.24689 5.66755 5.79025 5.88742 5.94189 6.08109 6.18347 6.42679 6.58297 6.91694 7.31108 7.50091 8.96489 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.013577 B = 0.007764 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.777853 B = 3605.389651 C = 4536.924521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.382 6.382 3 C 0.053 3.947 4 C 0.118 3.882 5 N -0.592 5.592 6 C 0.258 3.742 7 C -0.492 4.492 8 H 0.050 0.950 9 C 0.017 3.983 10 N -0.927 5.927 11 Si 0.941 3.059 12 H -0.282 1.282 13 H -0.285 1.285 14 H -0.269 1.269 15 C 0.528 3.472 16 O -0.571 6.571 17 C 0.033 3.967 18 H 0.064 0.936 19 C 0.089 3.911 20 O -0.394 6.394 21 C 0.058 3.942 22 C 0.015 3.985 23 N -0.525 5.525 24 C 0.030 3.970 25 H 0.030 0.970 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.028 0.972 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.021 0.979 33 H 0.021 0.979 34 H 0.262 0.738 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.070 0.930 39 H 0.031 0.969 40 H 0.117 0.883 41 H 0.055 0.945 42 H 0.095 0.905 43 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.107 9.076 -3.160 9.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C -0.025 4.025 4 C -0.005 4.005 5 N -0.323 5.323 6 C 0.137 3.863 7 C -0.531 4.531 8 H 0.068 0.932 9 C -0.182 4.182 10 N -0.568 5.568 11 Si 0.768 3.232 12 H -0.208 1.208 13 H -0.211 1.211 14 H -0.193 1.193 15 C 0.315 3.685 16 O -0.451 6.451 17 C -0.079 4.079 18 H 0.082 0.918 19 C 0.011 3.989 20 O -0.313 6.313 21 C -0.018 4.018 22 C -0.113 4.113 23 N -0.251 5.251 24 C -0.118 4.118 25 H 0.049 0.951 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.046 0.954 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.145 0.855 38 H 0.088 0.912 39 H 0.049 0.951 40 H 0.135 0.865 41 H 0.074 0.926 42 H 0.114 0.886 43 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 0.477 9.630 -3.053 10.113 hybrid contribution -1.785 -1.302 -0.263 2.225 sum -1.308 8.328 -3.316 9.059 Atomic orbital electron populations 1.22708 0.81494 1.02293 0.99880 1.88233 1.19605 1.27074 1.95157 1.22854 0.94366 0.85286 0.99960 1.21582 0.92950 0.99552 0.86427 1.48202 1.63807 1.08798 1.11485 1.19075 0.96277 0.74046 0.96879 1.21374 1.01115 0.91562 1.39037 0.93219 1.25485 0.98605 0.97498 0.96591 1.70008 1.32904 1.04291 1.49601 0.85814 0.81250 0.77787 0.78376 1.20796 1.21066 1.19334 1.20160 0.77568 0.86178 0.84568 1.90562 1.55784 1.15652 1.83120 1.22258 0.98580 0.96523 0.90518 0.91782 1.22388 0.88850 0.99906 0.87773 1.87994 1.73800 1.53963 1.15518 1.22958 0.92898 0.97235 0.88728 1.22990 0.96813 0.98852 0.92601 1.62089 1.11877 1.49192 1.01923 1.22357 0.86571 0.99598 1.03307 0.95131 0.90703 0.92273 0.95401 0.90476 0.88286 0.89323 0.96082 0.96069 0.92934 0.91450 0.88466 0.85506 0.91152 0.95058 0.86474 0.92634 0.88634 0.96813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.05 11.01 113.37 1.25 2.30 16 2 O -0.38 -15.13 8.08 -148.98 -1.20 -16.33 16 3 C 0.05 1.81 6.28 71.98 0.45 2.26 16 4 C 0.12 4.15 5.82 86.38 0.50 4.65 16 5 N -0.59 -24.76 2.44 -826.16 -2.01 -26.77 16 6 C 0.26 12.44 4.66 85.63 0.40 12.84 16 7 C -0.49 -25.69 6.99 25.60 0.18 -25.51 16 8 H 0.05 2.69 7.18 -2.91 -0.02 2.67 16 9 C 0.02 0.89 5.46 84.65 0.46 1.35 16 10 N -0.93 -52.54 13.29 21.45 0.28 -52.26 16 11 Si 0.94 43.28 29.54 68.60 2.03 45.30 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 15 C 0.53 21.99 5.82 87.66 0.51 22.50 16 16 O -0.57 -24.98 15.01 -3.00 -0.05 -25.03 16 17 C 0.03 1.31 1.55 44.18 0.07 1.37 16 18 H 0.06 2.98 6.06 -2.39 -0.01 2.96 16 19 C 0.09 3.13 6.16 72.02 0.44 3.57 16 20 O -0.39 -13.30 10.83 -148.98 -1.61 -14.91 16 21 C 0.06 1.48 7.01 72.02 0.50 1.99 16 22 C 0.02 0.42 5.65 86.32 0.49 0.91 16 23 N -0.53 -18.25 4.53 -900.45 -4.08 -22.33 16 24 C 0.03 1.02 9.14 127.69 1.17 2.18 16 25 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.10 3.18 7.49 -2.39 -0.02 3.16 16 31 H 0.09 2.96 7.86 -2.39 -0.02 2.94 16 32 H 0.02 1.08 5.82 -2.39 -0.01 1.06 16 33 H 0.02 1.10 7.83 -2.39 -0.02 1.08 16 34 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 35 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.10 3.49 7.35 -2.39 -0.02 3.47 16 37 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.12 2.48 8.11 -2.38 -0.02 2.46 16 41 H 0.05 2.13 6.35 -2.39 -0.02 2.12 16 42 H 0.10 2.58 8.08 -2.38 -0.02 2.56 16 43 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -64.77 342.42 0.76 -64.01 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.98 Total: 17.89 kcal Atomic # 6 Polarization: 23.99 SS G_CDS: 6.42 Total: 30.42 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -5.81 Total: -101.35 kcal Atomic # 8 Polarization: -53.40 SS G_CDS: -2.86 Total: -56.26 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -64.77 0.76 -64.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611565626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.187 kcal (2) G-P(sol) polarization free energy of solvation -64.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds