Wall clock time and date at job start Tue Mar 31 2020 02:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00252 * 2 1 4 4 C 1.52999 * 109.47328 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.50990 * 54.90732 * 4 3 2 6 6 C 1.53297 * 109.51061 * 175.00070 * 4 3 2 7 7 N 1.47154 * 108.38187 * 172.27985 * 6 4 3 8 8 C 1.34775 * 120.98132 * 129.44470 * 7 6 4 9 9 O 1.21283 * 119.99938 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.99919 * 179.97438 * 8 7 6 11 11 H 1.08992 * 109.46894 * 39.99799 * 10 8 7 12 12 N 1.46906 * 109.47109 * 160.00064 * 10 8 7 13 13 C 1.52997 * 109.47084 * 279.99769 * 10 8 7 14 14 C 1.52997 * 109.47181 * 175.00286 * 13 10 8 15 15 C 1.50700 * 109.47286 * 180.02562 * 14 13 10 16 16 H 1.08004 * 119.99996 * 359.97438 * 15 14 13 17 17 C 1.37883 * 120.00234 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99860 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99828 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.47361 * 90.00151 * 19 17 15 21 21 H 1.48496 * 109.47024 * 210.00728 * 19 17 15 22 22 H 1.48502 * 109.47134 * 330.00113 * 19 17 15 23 23 C 1.47151 * 118.03607 * 309.71350 * 7 6 4 24 24 C 1.52885 * 108.60393 * 50.23316 * 23 7 6 25 25 O 1.42959 * 109.55566 * 294.77351 * 4 3 2 26 26 H 1.09006 * 109.47070 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47004 * 299.99813 * 1 2 3 28 28 H 1.09001 * 109.47410 * 59.99502 * 1 2 3 29 29 H 1.09004 * 109.46876 * 60.00496 * 3 2 1 30 30 H 1.08994 * 109.47418 * 300.00675 * 3 2 1 31 31 H 1.08996 * 109.68457 * 52.56069 * 6 4 3 32 32 H 1.09002 * 109.68470 * 292.00469 * 6 4 3 33 33 H 1.00904 * 110.99860 * 296.04769 * 12 10 8 34 34 H 1.00902 * 110.99567 * 59.99488 * 12 10 8 35 35 H 1.09004 * 109.47610 * 295.00125 * 13 10 8 36 36 H 1.09001 * 109.47532 * 54.99945 * 13 10 8 37 37 H 1.09007 * 109.46964 * 299.99672 * 14 13 10 38 38 H 1.09000 * 109.47346 * 60.00199 * 14 13 10 39 39 H 0.97006 * 119.99352 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.68211 * 170.00861 * 23 7 6 41 41 H 1.08998 * 109.68363 * 290.56582 * 23 7 6 42 42 H 1.08995 * 109.57861 * 187.92213 * 24 23 7 43 43 H 1.08995 * 109.40691 * 67.83932 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8521 0.5669 -0.8398 6 6 4.1596 2.5791 -0.1253 7 7 5.6136 2.4556 0.0644 8 6 6.4768 2.9959 -0.8185 9 8 6.0585 3.5950 -1.7865 10 6 7.9617 2.8565 -0.6022 11 1 8.1829 1.8542 -0.2359 12 7 8.6646 3.0799 -1.8727 13 6 8.4264 3.8896 0.4262 14 6 9.9076 3.6675 0.7386 15 6 10.3653 4.6846 1.7520 16 1 9.6693 5.4166 2.1347 17 6 11.6727 4.6815 2.1900 18 7 12.0721 5.5695 3.0740 19 14 12.8765 3.4161 1.5276 20 1 13.5447 3.9552 0.3161 21 1 13.8972 3.1144 2.5631 22 1 12.1445 2.1724 1.1772 23 6 6.0973 1.7196 1.2432 24 6 5.3788 0.3715 1.3052 25 8 3.9674 0.5843 1.2241 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.6887 1.8463 0.8901 30 1 1.6886 1.8464 -0.8899 31 1 3.7445 3.2374 0.6379 32 1 3.9517 2.9864 -1.1147 33 1 8.4231 2.3711 -2.5491 34 1 8.4753 4.0031 -2.2332 35 1 8.2867 4.8925 0.0226 36 1 7.8421 3.7810 1.3399 37 1 10.0474 2.6647 1.1423 38 1 10.4920 3.7762 -0.1751 39 1 12.9918 5.5670 3.3824 40 1 7.1720 1.5579 1.1596 41 1 5.8805 2.2898 2.1465 42 1 5.6184 -0.1272 2.2443 43 1 5.7020 -0.2499 0.4701 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705865001.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:01 Heat of formation + Delta-G solvation = -124.842788 kcal Electronic energy + Delta-G solvation = -23467.981965 eV Core-core repulsion = 19934.445114 eV Total energy + Delta-G solvation = -3533.536851 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.65664 -38.95135 -37.77326 -35.51257 -34.88044 -32.88005 -32.58429 -30.53821 -28.87642 -27.93957 -26.64091 -25.39705 -23.67916 -23.16181 -21.45404 -20.18561 -19.19654 -17.57973 -17.24758 -16.88233 -16.72681 -16.14232 -15.94947 -15.64032 -15.40628 -15.13823 -14.82816 -14.50289 -14.12729 -14.03333 -13.50794 -13.29545 -12.75989 -12.60808 -12.54454 -12.38236 -12.01647 -11.91271 -11.67824 -11.39199 -11.02674 -10.94697 -10.90338 -10.43904 -10.28372 -10.05101 -10.02331 -9.73937 -9.63217 -9.14260 -8.73394 -8.54904 -8.43910 -6.01224 -3.99072 2.56656 2.69295 3.29708 3.36020 3.42716 3.46812 3.47320 4.43474 4.49389 4.50524 4.61230 4.70924 4.74346 4.84158 4.92437 4.96209 4.99757 5.04825 5.10261 5.16194 5.31341 5.32422 5.33424 5.35338 5.52800 5.55664 5.59854 5.73497 6.18146 6.25184 6.43573 6.74198 6.82178 6.87283 7.12557 7.30383 7.34588 7.52980 7.60714 7.83797 8.07531 8.55907 9.03351 9.61569 11.12220 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.029198 B = 0.003361 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.754706 B = 8330.024968 C = 8690.686418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.071 3.929 4 C 0.082 3.918 5 H 0.070 0.930 6 C 0.083 3.917 7 N -0.613 5.613 8 C 0.489 3.511 9 O -0.550 6.550 10 C 0.075 3.925 11 H 0.099 0.901 12 N -0.810 5.810 13 C -0.088 4.088 14 C -0.003 4.003 15 C -0.522 4.522 16 H 0.069 0.931 17 C 0.066 3.934 18 N -0.906 5.906 19 Si 0.883 3.117 20 H -0.277 1.277 21 H -0.291 1.291 22 H -0.264 1.264 23 C 0.066 3.934 24 C 0.048 3.952 25 O -0.368 6.368 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.335 0.665 34 H 0.350 0.650 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.012 0.988 38 H 0.029 0.971 39 H 0.262 0.738 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.111 0.889 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.401 -12.083 -6.204 24.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.006 4.006 4 C 0.023 3.977 5 H 0.088 0.912 6 C -0.040 4.040 7 N -0.348 5.348 8 C 0.277 3.723 9 O -0.428 6.428 10 C -0.041 4.041 11 H 0.117 0.883 12 N -0.338 5.338 13 C -0.127 4.127 14 C -0.041 4.041 15 C -0.560 4.560 16 H 0.087 0.913 17 C -0.135 4.135 18 N -0.545 5.545 19 Si 0.710 3.290 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.189 1.189 23 C -0.057 4.057 24 C -0.029 4.029 25 O -0.286 6.286 26 H 0.105 0.895 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.147 0.853 34 H 0.165 0.835 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.031 0.969 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.124 0.876 41 H 0.103 0.897 42 H 0.129 0.871 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.777 -12.003 -6.063 23.916 hybrid contribution -0.343 -0.140 -0.742 0.830 sum -20.120 -12.142 -6.806 24.466 Atomic orbital electron populations 1.22760 0.80860 1.02901 1.00012 1.87932 1.19715 1.27116 1.95417 1.22443 0.91223 0.85588 1.01338 1.22406 0.93106 0.93681 0.88550 0.91192 1.22108 0.81139 0.96505 1.04291 1.48217 1.05687 1.55475 1.25408 1.22704 0.91052 0.77161 0.81405 1.90645 1.79807 1.42247 1.30064 1.21912 0.84977 1.02927 0.94278 0.88320 1.59057 1.60600 1.08740 1.05426 1.21497 1.00141 0.96222 0.94798 1.19480 0.90706 0.96770 0.97122 1.21163 0.96325 1.15359 1.23115 0.91311 1.25020 0.98274 0.95554 0.94669 1.69926 1.17403 1.35613 1.31540 0.86729 0.80911 0.82716 0.78600 1.20299 1.21701 1.18898 1.22552 1.00985 0.93379 0.88754 1.22954 0.81013 0.95591 1.03372 1.88017 1.22296 1.81354 1.36944 0.89513 0.93897 0.94086 0.91974 0.91476 0.90493 0.88103 0.85299 0.83537 0.92159 0.92074 0.96934 0.95220 0.92816 0.87555 0.89725 0.87056 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.98 10.67 -39.66 -0.42 -4.41 16 3 C 0.07 0.64 5.61 37.16 0.21 0.85 16 4 C 0.08 0.86 3.06 -26.58 -0.08 0.78 16 5 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 6 C 0.08 0.93 5.93 -3.53 -0.02 0.91 16 7 N -0.61 -7.86 3.03 -172.52 -0.52 -8.39 16 8 C 0.49 7.46 6.95 -10.98 -0.08 7.38 16 9 O -0.55 -9.73 15.72 5.55 0.09 -9.64 16 10 C 0.07 1.16 2.31 -68.86 -0.16 1.00 16 11 H 0.10 1.39 6.50 -51.93 -0.34 1.05 16 12 N -0.81 -12.51 8.44 -5.65 -0.05 -12.56 16 13 C -0.09 -1.68 4.59 -26.73 -0.12 -1.80 16 14 C 0.00 -0.08 3.93 -27.88 -0.11 -0.19 16 15 C -0.52 -14.68 9.66 -34.44 -0.33 -15.02 16 16 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 17 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 18 N -0.91 -27.93 13.96 55.43 0.77 -27.16 16 19 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 22 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 23 C 0.07 0.73 5.74 -3.75 -0.02 0.71 16 24 C 0.05 0.47 6.97 37.10 0.26 0.73 16 25 O -0.37 -4.28 10.36 -39.66 -0.41 -4.69 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 1.18 7.08 -51.93 -0.37 0.82 16 33 H 0.34 4.44 9.06 -39.29 -0.36 4.09 16 34 H 0.35 5.55 8.58 -39.29 -0.34 5.21 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.11 7.29 -51.93 -0.38 0.74 16 37 H 0.01 0.28 7.20 -51.92 -0.37 -0.09 16 38 H 0.03 0.71 7.18 -51.93 -0.37 0.33 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.11 1.15 5.39 -51.93 -0.28 0.87 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 345.76 15.07 5.21 5.21 Total: -1.00 -34.13 345.76 -6.48 -40.62 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -7.04 Total: 5.42 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 0.56 Total: -1.52 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 0.20 Total: -48.10 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.75 Total: -18.74 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.13 -6.48 -40.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705865001.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.227 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds