Wall clock time and date at job start Tue Mar 31 2020 02:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00252 * 2 1 4 4 C 1.52999 * 109.47328 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.50990 * 54.90732 * 4 3 2 6 6 C 1.53297 * 109.51061 * 175.00070 * 4 3 2 7 7 N 1.47154 * 108.38187 * 172.27985 * 6 4 3 8 8 C 1.34775 * 120.98132 * 129.44470 * 7 6 4 9 9 O 1.21283 * 119.99938 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.99919 * 179.97438 * 8 7 6 11 11 H 1.08992 * 109.46894 * 39.99799 * 10 8 7 12 12 N 1.46906 * 109.47109 * 160.00064 * 10 8 7 13 13 C 1.52997 * 109.47084 * 279.99769 * 10 8 7 14 14 C 1.52997 * 109.47181 * 175.00286 * 13 10 8 15 15 C 1.50700 * 109.47286 * 180.02562 * 14 13 10 16 16 H 1.08004 * 119.99996 * 359.97438 * 15 14 13 17 17 C 1.37883 * 120.00234 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99860 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99828 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.47361 * 90.00151 * 19 17 15 21 21 H 1.48496 * 109.47024 * 210.00728 * 19 17 15 22 22 H 1.48502 * 109.47134 * 330.00113 * 19 17 15 23 23 C 1.47151 * 118.03607 * 309.71350 * 7 6 4 24 24 C 1.52885 * 108.60393 * 50.23316 * 23 7 6 25 25 O 1.42959 * 109.55566 * 294.77351 * 4 3 2 26 26 H 1.09006 * 109.47070 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47004 * 299.99813 * 1 2 3 28 28 H 1.09001 * 109.47410 * 59.99502 * 1 2 3 29 29 H 1.09004 * 109.46876 * 60.00496 * 3 2 1 30 30 H 1.08994 * 109.47418 * 300.00675 * 3 2 1 31 31 H 1.08996 * 109.68457 * 52.56069 * 6 4 3 32 32 H 1.09002 * 109.68470 * 292.00469 * 6 4 3 33 33 H 1.00904 * 110.99860 * 296.04769 * 12 10 8 34 34 H 1.00902 * 110.99567 * 59.99488 * 12 10 8 35 35 H 1.09004 * 109.47610 * 295.00125 * 13 10 8 36 36 H 1.09001 * 109.47532 * 54.99945 * 13 10 8 37 37 H 1.09007 * 109.46964 * 299.99672 * 14 13 10 38 38 H 1.09000 * 109.47346 * 60.00199 * 14 13 10 39 39 H 0.97006 * 119.99352 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.68211 * 170.00861 * 23 7 6 41 41 H 1.08998 * 109.68363 * 290.56582 * 23 7 6 42 42 H 1.08995 * 109.57861 * 187.92213 * 24 23 7 43 43 H 1.08995 * 109.40691 * 67.83932 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8521 0.5669 -0.8398 6 6 4.1596 2.5791 -0.1253 7 7 5.6136 2.4556 0.0644 8 6 6.4768 2.9959 -0.8185 9 8 6.0585 3.5950 -1.7865 10 6 7.9617 2.8565 -0.6022 11 1 8.1829 1.8542 -0.2359 12 7 8.6646 3.0799 -1.8727 13 6 8.4264 3.8896 0.4262 14 6 9.9076 3.6675 0.7386 15 6 10.3653 4.6846 1.7520 16 1 9.6693 5.4166 2.1347 17 6 11.6727 4.6815 2.1900 18 7 12.0721 5.5695 3.0740 19 14 12.8765 3.4161 1.5276 20 1 13.5447 3.9552 0.3161 21 1 13.8972 3.1144 2.5631 22 1 12.1445 2.1724 1.1772 23 6 6.0973 1.7196 1.2432 24 6 5.3788 0.3715 1.3052 25 8 3.9674 0.5843 1.2241 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.6887 1.8463 0.8901 30 1 1.6886 1.8464 -0.8899 31 1 3.7445 3.2374 0.6379 32 1 3.9517 2.9864 -1.1147 33 1 8.4231 2.3711 -2.5491 34 1 8.4753 4.0031 -2.2332 35 1 8.2867 4.8925 0.0226 36 1 7.8421 3.7810 1.3399 37 1 10.0474 2.6647 1.1423 38 1 10.4920 3.7762 -0.1751 39 1 12.9918 5.5670 3.3824 40 1 7.1720 1.5579 1.1596 41 1 5.8805 2.2898 2.1465 42 1 5.6184 -0.1272 2.2443 43 1 5.7020 -0.2499 0.4701 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705865001.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:01 Heat of formation + Delta-G solvation = -151.984063 kcal Electronic energy + Delta-G solvation = -23469.158899 eV Core-core repulsion = 19934.445114 eV Total energy + Delta-G solvation = -3534.713785 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.70649 -39.91099 -38.50531 -36.97127 -35.89625 -34.81557 -33.46418 -32.30588 -29.74044 -29.03702 -27.76941 -26.42828 -24.82331 -24.27051 -22.55717 -21.76426 -20.31116 -18.95325 -18.57991 -18.04894 -17.61732 -17.14377 -17.05774 -16.49376 -16.27585 -16.18282 -16.07933 -15.78275 -15.45674 -15.16118 -14.74483 -14.53770 -14.34762 -13.99581 -13.61699 -13.43143 -13.20114 -12.84272 -12.81281 -12.53936 -12.47214 -12.09759 -11.99340 -11.82683 -11.68741 -11.61502 -11.29760 -11.23217 -11.11478 -10.70408 -10.68282 -9.75556 -9.69331 -8.23933 -6.27308 1.36882 1.43086 1.44082 1.56568 1.70031 2.42344 2.57633 2.75935 3.12857 3.33126 3.58961 3.69764 3.83899 3.91552 3.94318 3.98703 4.18023 4.18583 4.28039 4.33297 4.42492 4.47432 4.54413 4.57641 4.68056 4.70937 4.76905 4.81101 4.86214 4.89932 5.11974 5.23098 5.49677 5.64879 5.73099 5.98268 6.04110 6.17005 6.18812 6.33140 6.46232 6.81255 6.91763 7.37217 8.92938 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.029198 B = 0.003361 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.754706 B = 8330.024968 C = 8690.686418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.071 3.929 4 C 0.087 3.913 5 H 0.063 0.937 6 C 0.083 3.917 7 N -0.610 5.610 8 C 0.489 3.511 9 O -0.578 6.578 10 C 0.084 3.916 11 H 0.121 0.879 12 N -0.817 5.817 13 C -0.079 4.079 14 C 0.004 3.996 15 C -0.530 4.530 16 H 0.027 0.973 17 C 0.002 3.998 18 N -0.955 5.955 19 Si 0.954 3.046 20 H -0.274 1.274 21 H -0.288 1.288 22 H -0.238 1.238 23 C 0.062 3.938 24 C 0.050 3.950 25 O -0.382 6.382 26 H 0.095 0.905 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.349 0.651 34 H 0.346 0.654 35 H 0.039 0.961 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.265 0.735 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.133 0.867 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.936 -14.370 -6.896 26.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.006 4.006 4 C 0.028 3.972 5 H 0.081 0.919 6 C -0.040 4.040 7 N -0.343 5.343 8 C 0.277 3.723 9 O -0.458 6.458 10 C -0.031 4.031 11 H 0.139 0.861 12 N -0.346 5.346 13 C -0.117 4.117 14 C -0.034 4.034 15 C -0.568 4.568 16 H 0.046 0.954 17 C -0.194 4.194 18 N -0.596 5.596 19 Si 0.777 3.223 20 H -0.199 1.199 21 H -0.214 1.214 22 H -0.161 1.161 23 C -0.060 4.060 24 C -0.027 4.027 25 O -0.301 6.301 26 H 0.114 0.886 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.129 0.871 41 H 0.104 0.896 42 H 0.150 0.850 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.353 -14.322 -6.747 25.785 hybrid contribution -0.267 0.639 -0.465 0.834 sum -20.620 -13.684 -7.212 25.776 Atomic orbital electron populations 1.22942 0.79187 1.03903 1.01004 1.87880 1.21636 1.27845 1.95641 1.22491 0.90118 0.85478 1.02476 1.22376 0.94174 0.92676 0.88006 0.91935 1.22191 0.80192 0.97351 1.04246 1.48278 1.06262 1.54619 1.25174 1.22525 0.91117 0.77162 0.81489 1.90634 1.80158 1.43641 1.31401 1.21717 0.85320 1.02611 0.93488 0.86099 1.59050 1.60659 1.09074 1.05792 1.21268 0.97877 0.96392 0.96169 1.19362 0.93040 0.95645 0.95305 1.21542 0.95853 1.15551 1.23874 0.95431 1.26017 1.00544 0.97914 0.94928 1.70086 1.18094 1.38006 1.33450 0.85607 0.78243 0.80637 0.77793 1.19920 1.21400 1.16131 1.22717 1.01445 0.93957 0.87897 1.23072 0.80057 0.94833 1.04773 1.88010 1.23285 1.81388 1.37396 0.88612 0.93170 0.92801 0.91421 0.89727 0.89721 0.88661 0.83747 0.83989 0.94240 0.91585 0.95487 0.95453 0.92675 0.87124 0.89626 0.84953 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.92 10.67 -144.75 -1.54 -9.46 16 3 C 0.07 1.16 5.61 71.98 0.40 1.56 16 4 C 0.09 1.69 3.06 30.69 0.09 1.78 16 5 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 6 C 0.08 1.76 5.93 86.35 0.51 2.28 16 7 N -0.61 -14.72 3.03 -818.13 -2.48 -17.19 16 8 C 0.49 14.29 6.95 87.66 0.61 14.90 16 9 O -0.58 -20.02 15.72 -3.04 -0.05 -20.07 16 10 C 0.08 2.46 2.31 44.17 0.10 2.56 16 11 H 0.12 3.02 6.50 -2.39 -0.02 3.00 16 12 N -0.82 -23.79 8.44 -171.80 -1.45 -25.24 16 13 C -0.08 -2.93 4.59 30.59 0.14 -2.78 16 14 C 0.00 0.18 3.93 29.85 0.12 0.29 16 15 C -0.53 -30.21 9.66 25.60 0.25 -29.96 16 16 H 0.03 1.74 7.99 -2.91 -0.02 1.71 16 17 C 0.00 0.12 5.47 84.66 0.46 0.59 16 18 N -0.96 -60.13 13.96 21.45 0.30 -59.83 16 19 Si 0.95 44.14 27.47 68.60 1.88 46.03 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 22 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 23 C 0.06 1.23 5.74 86.22 0.50 1.73 16 24 C 0.05 0.85 6.97 71.94 0.50 1.35 16 25 O -0.38 -8.18 10.36 -144.75 -1.50 -9.68 16 26 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.10 2.15 7.08 -2.39 -0.02 2.13 16 33 H 0.35 8.51 9.06 -89.69 -0.81 7.70 16 34 H 0.35 10.67 8.58 -89.69 -0.77 9.90 16 35 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 2.36 7.29 -2.39 -0.02 2.34 16 37 H 0.03 1.14 7.20 -2.38 -0.02 1.12 16 38 H 0.03 1.25 7.18 -2.39 -0.02 1.23 16 39 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 40 H 0.11 2.10 5.39 -2.39 -0.01 2.09 16 41 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.13 1.69 8.14 -2.39 -0.02 1.68 16 43 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -73.76 345.76 -0.52 -74.29 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: -0.62 Total: 25.31 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 4.93 Total: -4.14 kcal Atomic # 7 Polarization: -98.64 SS G_CDS: -3.63 Total: -102.27 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -3.09 Total: -39.21 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.03 kcal Total: -73.76 -0.52 -74.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705865001.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.699 kcal (2) G-P(sol) polarization free energy of solvation -73.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds