Wall clock time and date at job start Tue Mar 31 2020 03:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00198 * 2 1 4 4 H 1.08999 * 109.54280 * 30.17913 * 3 2 1 5 5 C 1.53173 * 109.54392 * 269.99690 * 3 2 1 6 6 C 1.53095 * 109.16329 * 183.15259 * 5 3 2 7 7 O 1.42901 * 109.41489 * 57.60980 * 6 5 3 8 8 C 1.42905 * 114.09770 * 298.84274 * 7 6 5 9 9 C 1.53092 * 109.42428 * 61.14988 * 8 7 6 10 10 H 1.09004 * 109.51890 * 62.30469 * 9 8 7 11 11 N 1.46501 * 109.52293 * 182.49021 * 9 8 7 12 12 C 1.34778 * 119.99973 * 275.00453 * 11 9 8 13 13 O 1.21283 * 119.99907 * 359.97438 * 12 11 9 14 14 C 1.50695 * 119.99854 * 180.02562 * 12 11 9 15 15 H 1.09001 * 109.47735 * 39.99953 * 14 12 11 16 16 N 1.46908 * 109.47330 * 159.99786 * 14 12 11 17 17 C 1.53000 * 109.47086 * 279.99786 * 14 12 11 18 18 C 1.53005 * 109.47082 * 175.00104 * 17 14 12 19 19 C 1.50707 * 109.46792 * 180.02562 * 18 17 14 20 20 H 1.07994 * 120.00190 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99489 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99624 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00224 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47374 * 90.00040 * 23 21 19 25 25 H 1.48493 * 109.46919 * 209.99887 * 23 21 19 26 26 H 1.48507 * 109.47068 * 329.99717 * 23 21 19 27 27 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47364 * 300.00220 * 1 2 3 29 29 H 1.09004 * 109.46617 * 59.99800 * 1 2 3 30 30 H 1.09001 * 109.52011 * 63.24947 * 5 3 2 31 31 H 1.09003 * 109.52380 * 303.05823 * 5 3 2 32 32 H 1.09002 * 109.47669 * 297.62672 * 6 5 3 33 33 H 1.08997 * 109.48836 * 177.60373 * 6 5 3 34 34 H 1.09002 * 109.48053 * 181.14179 * 8 7 6 35 35 H 1.08999 * 109.48097 * 301.16746 * 8 7 6 36 36 H 0.96998 * 119.99875 * 95.00680 * 11 9 8 37 37 H 1.00895 * 110.99736 * 59.99673 * 16 14 12 38 38 H 1.00895 * 111.00032 * 183.95514 * 16 14 12 39 39 H 1.09002 * 109.46905 * 294.99731 * 17 14 12 40 40 H 1.08995 * 109.47306 * 55.00075 * 17 14 12 41 41 H 1.08994 * 109.47218 * 299.99749 * 18 17 14 42 42 H 1.09002 * 109.47060 * 60.00209 * 18 17 14 43 43 H 0.96993 * 119.99879 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3474 1.9997 0.5164 5 6 2.2188 1.7735 -1.4435 6 6 2.9133 3.1378 -1.4340 7 8 4.1527 3.0350 -0.7302 8 6 4.0160 2.6468 0.6383 9 6 3.3656 1.2628 0.7124 10 1 4.0101 0.5310 0.2253 11 7 3.1702 0.8882 2.1151 12 6 4.1739 0.3104 2.8044 13 8 5.2388 0.1002 2.2633 14 6 3.9727 -0.0756 4.2472 15 1 2.9733 -0.4912 4.3762 16 7 4.9740 -1.0802 4.6296 17 6 4.1283 1.1624 5.1327 18 6 3.8019 0.7969 6.5822 19 6 3.9546 2.0165 7.4543 20 1 4.2548 2.9578 7.0184 21 6 3.7110 1.9303 8.8087 22 7 3.8447 2.9944 9.5698 23 14 3.1923 0.3018 9.5626 24 1 4.3985 -0.4554 9.9834 25 1 2.3301 0.5559 10.7446 26 1 2.4360 -0.4898 8.5592 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.2530 1.8599 -1.9415 31 1 2.8401 1.0521 -1.9742 32 1 2.2734 3.8680 -0.9387 33 1 3.1027 3.4566 -2.4590 34 1 4.9999 2.6116 1.1062 35 1 3.3907 3.3706 1.1608 36 1 2.3184 1.0559 2.5477 37 1 5.9094 -0.7188 4.5189 38 1 4.8203 -1.4029 5.5732 39 1 5.1541 1.5260 5.0719 40 1 3.4460 1.9410 4.7919 41 1 2.7762 0.4333 6.6430 42 1 4.4843 0.0182 6.9230 43 1 3.6737 2.9337 10.5226 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724901185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:44 Heat of formation + Delta-G solvation = -139.013163 kcal Electronic energy + Delta-G solvation = -23555.764705 eV Core-core repulsion = 20021.613381 eV Total energy + Delta-G solvation = -3534.151324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.53025 -39.13567 -37.69211 -35.72162 -34.70617 -32.81739 -32.34462 -30.33255 -30.18379 -27.22368 -26.79516 -24.50758 -24.35241 -22.95350 -20.95229 -20.53804 -19.80361 -17.68139 -17.17491 -16.86286 -16.64798 -16.50173 -15.85179 -15.41549 -14.89852 -14.70827 -14.57200 -14.39364 -14.23947 -13.89339 -13.50943 -13.38768 -13.12611 -12.79267 -12.67878 -12.28374 -12.23111 -11.93400 -11.58334 -11.35850 -11.28345 -10.99726 -10.81867 -10.37232 -10.21040 -10.12694 -9.97175 -9.88423 -9.40280 -9.33304 -8.99334 -8.63685 -8.31663 -6.13387 -4.13016 2.85279 3.01187 3.24015 3.27757 3.32304 3.33429 3.70761 4.26079 4.36216 4.42845 4.54717 4.62961 4.88372 4.93618 4.96330 5.01799 5.03913 5.07191 5.14087 5.19731 5.32007 5.38562 5.40557 5.46132 5.59209 5.59952 5.70973 5.81567 6.11707 6.30907 6.38129 6.63976 6.80469 6.88614 7.06931 7.20403 7.32250 7.59613 7.65509 7.78404 8.39032 8.42948 8.90496 9.47910 10.99823 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.020866 B = 0.003606 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.571791 B = 7762.887275 C = 7931.699692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.374 6.374 3 C 0.080 3.920 4 H 0.068 0.932 5 C -0.175 4.175 6 C 0.059 3.941 7 O -0.374 6.374 8 C 0.054 3.946 9 C 0.120 3.880 10 H 0.104 0.896 11 N -0.722 5.722 12 C 0.529 3.471 13 O -0.533 6.533 14 C 0.073 3.927 15 H 0.097 0.903 16 N -0.830 5.830 17 C -0.130 4.130 18 C -0.011 4.011 19 C -0.524 4.524 20 H 0.071 0.929 21 C 0.067 3.933 22 N -0.901 5.901 23 Si 0.881 3.119 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.265 1.265 27 H 0.088 0.912 28 H 0.044 0.956 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.057 0.943 36 H 0.401 0.599 37 H 0.348 0.652 38 H 0.350 0.650 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.018 0.982 42 H 0.012 0.988 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.867 -2.679 -21.041 22.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.292 6.292 3 C 0.022 3.978 4 H 0.086 0.914 5 C -0.213 4.213 6 C -0.018 4.018 7 O -0.291 6.291 8 C -0.024 4.024 9 C 0.014 3.986 10 H 0.122 0.878 11 N -0.376 5.376 12 C 0.316 3.684 13 O -0.408 6.408 14 C -0.042 4.042 15 H 0.115 0.885 16 N -0.362 5.362 17 C -0.169 4.169 18 C -0.048 4.048 19 C -0.562 4.562 20 H 0.089 0.911 21 C -0.134 4.134 22 N -0.539 5.539 23 Si 0.708 3.292 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.190 1.190 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.075 0.925 36 H 0.235 0.765 37 H 0.162 0.838 38 H 0.165 0.835 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.036 0.964 42 H 0.030 0.970 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.100 -3.349 -21.935 23.298 hybrid contribution -1.064 0.211 1.627 1.955 sum -8.164 -3.138 -20.309 22.112 Atomic orbital electron populations 1.22834 0.80933 1.03060 0.99959 1.88019 1.19665 1.26592 1.94937 1.22447 0.94266 0.85627 0.95488 0.91370 1.22739 1.02399 0.98997 0.97185 1.22611 0.86099 0.95124 0.97977 1.88012 1.29307 1.88717 1.23071 1.23058 1.02990 0.93422 0.82966 1.21628 0.95939 0.98349 0.82722 0.87821 1.45801 1.16774 1.63681 1.11306 1.20808 0.83453 0.75569 0.88581 1.90656 1.26089 1.53450 1.70576 1.21499 0.98234 0.94131 0.90368 0.88549 1.58717 1.06498 1.39485 1.31517 1.22208 1.02154 0.95508 0.97057 1.19576 0.96246 0.97633 0.91352 1.21067 1.46902 0.95996 0.92235 0.91075 1.25045 0.94759 0.96423 0.97206 1.69911 1.49422 1.28922 1.05670 0.86768 0.79083 0.84388 0.78969 1.20188 1.21341 1.18977 0.89399 0.93755 0.94131 0.90243 0.89650 0.92853 0.88210 0.87422 0.92473 0.76450 0.83819 0.83498 0.91998 0.91953 0.96365 0.97007 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.30 16 2 O -0.37 -3.94 10.28 -35.23 -0.36 -4.30 16 3 C 0.08 0.75 2.20 -26.55 -0.06 0.69 16 4 H 0.07 0.53 7.79 -51.93 -0.40 0.13 16 5 C -0.17 -1.37 5.76 -26.59 -0.15 -1.52 16 6 C 0.06 0.47 6.84 37.21 0.25 0.72 16 7 O -0.37 -4.29 10.77 -35.23 -0.38 -4.67 16 8 C 0.05 0.62 6.42 37.20 0.24 0.86 16 9 C 0.12 1.42 2.33 -67.79 -0.16 1.26 16 10 H 0.10 1.51 7.59 -51.93 -0.39 1.11 16 11 N -0.72 -9.10 5.01 -53.67 -0.27 -9.36 16 12 C 0.53 8.43 7.04 -10.99 -0.08 8.35 16 13 O -0.53 -10.14 15.92 5.55 0.09 -10.05 16 14 C 0.07 1.16 3.21 -68.86 -0.22 0.94 16 15 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 16 N -0.83 -13.47 8.94 -5.65 -0.05 -13.52 16 17 C -0.13 -2.38 4.78 -26.73 -0.13 -2.51 16 18 C -0.01 -0.23 3.81 -27.88 -0.11 -0.34 16 19 C -0.52 -14.38 9.66 -34.44 -0.33 -14.71 16 20 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 21 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 22 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 23 Si 0.88 20.95 27.47 -169.99 -4.67 16.28 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.29 8.09 -51.93 -0.42 -0.13 16 29 H 0.04 0.24 7.96 -51.93 -0.41 -0.18 16 30 H 0.08 0.48 7.96 -51.93 -0.41 0.06 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.40 4.24 8.60 -40.82 -0.35 3.89 16 37 H 0.35 5.75 8.58 -39.29 -0.34 5.42 16 38 H 0.35 5.46 7.55 -39.29 -0.30 5.16 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 42 H 0.01 0.25 6.30 -51.93 -0.33 -0.07 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 348.62 15.07 5.25 5.25 Total: -1.00 -33.06 348.62 -6.48 -39.54 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -7.12 Total: 10.40 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 0.26 Total: -3.14 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.45 Total: -49.30 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.65 Total: -19.03 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.06 -6.48 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724901185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.470 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds