Wall clock time and date at job start Tue Mar 31 2020 03:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00198 * 2 1 4 4 H 1.08999 * 109.54280 * 30.17913 * 3 2 1 5 5 C 1.53173 * 109.54392 * 269.99690 * 3 2 1 6 6 C 1.53095 * 109.16329 * 183.15259 * 5 3 2 7 7 O 1.42901 * 109.41489 * 57.60980 * 6 5 3 8 8 C 1.42905 * 114.09770 * 298.84274 * 7 6 5 9 9 C 1.53092 * 109.42428 * 61.14988 * 8 7 6 10 10 H 1.09004 * 109.51890 * 62.30469 * 9 8 7 11 11 N 1.46501 * 109.52293 * 182.49021 * 9 8 7 12 12 C 1.34778 * 119.99973 * 275.00453 * 11 9 8 13 13 O 1.21283 * 119.99907 * 359.97438 * 12 11 9 14 14 C 1.50695 * 119.99854 * 180.02562 * 12 11 9 15 15 H 1.09001 * 109.47735 * 39.99953 * 14 12 11 16 16 N 1.46908 * 109.47330 * 159.99786 * 14 12 11 17 17 C 1.53000 * 109.47086 * 279.99786 * 14 12 11 18 18 C 1.53005 * 109.47082 * 175.00104 * 17 14 12 19 19 C 1.50707 * 109.46792 * 180.02562 * 18 17 14 20 20 H 1.07994 * 120.00190 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99489 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99624 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00224 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47374 * 90.00040 * 23 21 19 25 25 H 1.48493 * 109.46919 * 209.99887 * 23 21 19 26 26 H 1.48507 * 109.47068 * 329.99717 * 23 21 19 27 27 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47364 * 300.00220 * 1 2 3 29 29 H 1.09004 * 109.46617 * 59.99800 * 1 2 3 30 30 H 1.09001 * 109.52011 * 63.24947 * 5 3 2 31 31 H 1.09003 * 109.52380 * 303.05823 * 5 3 2 32 32 H 1.09002 * 109.47669 * 297.62672 * 6 5 3 33 33 H 1.08997 * 109.48836 * 177.60373 * 6 5 3 34 34 H 1.09002 * 109.48053 * 181.14179 * 8 7 6 35 35 H 1.08999 * 109.48097 * 301.16746 * 8 7 6 36 36 H 0.96998 * 119.99875 * 95.00680 * 11 9 8 37 37 H 1.00895 * 110.99736 * 59.99673 * 16 14 12 38 38 H 1.00895 * 111.00032 * 183.95514 * 16 14 12 39 39 H 1.09002 * 109.46905 * 294.99731 * 17 14 12 40 40 H 1.08995 * 109.47306 * 55.00075 * 17 14 12 41 41 H 1.08994 * 109.47218 * 299.99749 * 18 17 14 42 42 H 1.09002 * 109.47060 * 60.00209 * 18 17 14 43 43 H 0.96993 * 119.99879 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3474 1.9997 0.5164 5 6 2.2188 1.7735 -1.4435 6 6 2.9133 3.1378 -1.4340 7 8 4.1527 3.0350 -0.7302 8 6 4.0160 2.6468 0.6383 9 6 3.3656 1.2628 0.7124 10 1 4.0101 0.5310 0.2253 11 7 3.1702 0.8882 2.1151 12 6 4.1739 0.3104 2.8044 13 8 5.2388 0.1002 2.2633 14 6 3.9727 -0.0756 4.2472 15 1 2.9733 -0.4912 4.3762 16 7 4.9740 -1.0802 4.6296 17 6 4.1283 1.1624 5.1327 18 6 3.8019 0.7969 6.5822 19 6 3.9546 2.0165 7.4543 20 1 4.2548 2.9578 7.0184 21 6 3.7110 1.9303 8.8087 22 7 3.8447 2.9944 9.5698 23 14 3.1923 0.3018 9.5626 24 1 4.3985 -0.4554 9.9834 25 1 2.3301 0.5559 10.7446 26 1 2.4360 -0.4898 8.5592 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.2530 1.8599 -1.9415 31 1 2.8401 1.0521 -1.9742 32 1 2.2734 3.8680 -0.9387 33 1 3.1027 3.4566 -2.4590 34 1 4.9999 2.6116 1.1062 35 1 3.3907 3.3706 1.1608 36 1 2.3184 1.0559 2.5477 37 1 5.9094 -0.7188 4.5189 38 1 4.8203 -1.4029 5.5732 39 1 5.1541 1.5260 5.0719 40 1 3.4460 1.9410 4.7919 41 1 2.7762 0.4333 6.6430 42 1 4.4843 0.0182 6.9230 43 1 3.6737 2.9337 10.5226 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724901185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:44 Heat of formation + Delta-G solvation = -166.762172 kcal Electronic energy + Delta-G solvation = -23556.967993 eV Core-core repulsion = 20021.613381 eV Total energy + Delta-G solvation = -3535.354612 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.51191 -40.21359 -38.42872 -37.17645 -35.82620 -34.80488 -33.06910 -32.07640 -31.14469 -28.36122 -27.78222 -25.78470 -25.23193 -24.06646 -22.17160 -21.81597 -21.02531 -19.15091 -18.46285 -18.08424 -17.64636 -17.31576 -16.69678 -16.39028 -16.17916 -15.88927 -15.77919 -15.69880 -15.49889 -15.03876 -14.71345 -14.50881 -14.39663 -14.14299 -13.86576 -13.57936 -13.07437 -13.02803 -12.86969 -12.67664 -12.29716 -12.07588 -11.95448 -11.91125 -11.66490 -11.59688 -11.39921 -11.01586 -10.89897 -10.76573 -10.54689 -10.05318 -9.65509 -8.29305 -6.34659 1.39395 1.40165 1.51636 1.58342 1.96448 2.36703 2.58949 2.91683 3.06520 3.48528 3.69687 3.70880 3.75735 3.88754 3.93661 4.09045 4.11605 4.18824 4.29855 4.40794 4.50093 4.55820 4.58411 4.64508 4.66671 4.74708 4.79443 4.89015 4.92334 4.96286 5.10311 5.33823 5.36929 5.47813 5.63243 6.05462 6.11591 6.17907 6.25821 6.47471 6.50411 6.73967 7.20384 7.30238 8.87430 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.020866 B = 0.003606 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.571791 B = 7762.887275 C = 7931.699692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.400 6.400 3 C 0.084 3.916 4 H 0.091 0.909 5 C -0.168 4.168 6 C 0.052 3.948 7 O -0.396 6.396 8 C 0.059 3.941 9 C 0.120 3.880 10 H 0.071 0.929 11 N -0.706 5.706 12 C 0.527 3.473 13 O -0.570 6.570 14 C 0.083 3.917 15 H 0.119 0.881 16 N -0.832 5.832 17 C -0.118 4.118 18 C -0.006 4.006 19 C -0.534 4.534 20 H 0.027 0.973 21 C 0.003 3.997 22 N -0.953 5.953 23 Si 0.953 3.047 24 H -0.269 1.269 25 H -0.288 1.288 26 H -0.237 1.237 27 H 0.091 0.909 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.414 0.586 37 H 0.345 0.655 38 H 0.355 0.645 39 H 0.042 0.958 40 H 0.067 0.933 41 H 0.032 0.968 42 H 0.022 0.978 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.193 -3.983 -21.997 24.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.319 6.319 3 C 0.026 3.974 4 H 0.109 0.891 5 C -0.207 4.207 6 C -0.024 4.024 7 O -0.313 6.313 8 C -0.019 4.019 9 C 0.014 3.986 10 H 0.089 0.911 11 N -0.360 5.360 12 C 0.314 3.686 13 O -0.448 6.448 14 C -0.032 4.032 15 H 0.137 0.863 16 N -0.364 5.364 17 C -0.158 4.158 18 C -0.044 4.044 19 C -0.572 4.572 20 H 0.046 0.954 21 C -0.194 4.194 22 N -0.593 5.593 23 Si 0.776 3.224 24 H -0.194 1.194 25 H -0.214 1.214 26 H -0.160 1.160 27 H 0.110 0.890 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.124 0.876 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.136 0.864 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.251 0.749 37 H 0.158 0.842 38 H 0.170 0.830 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.051 0.949 42 H 0.041 0.959 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.467 -4.649 -22.925 25.234 hybrid contribution -0.335 0.716 1.845 2.007 sum -9.802 -3.933 -21.080 23.578 Atomic orbital electron populations 1.23021 0.79215 1.03846 1.01271 1.87987 1.21606 1.27199 1.95143 1.22447 0.92845 0.85917 0.96227 0.89136 1.22700 1.03423 0.98368 0.96183 1.22889 0.85084 0.95653 0.98738 1.87983 1.31718 1.88747 1.22900 1.22880 1.01794 0.93680 0.83536 1.21638 0.97425 0.97478 0.82013 0.91055 1.45678 1.16511 1.62174 1.11614 1.20829 0.83476 0.75597 0.88710 1.90645 1.27635 1.55171 1.71310 1.21425 0.99260 0.92789 0.89776 0.86334 1.58734 1.06435 1.39357 1.31838 1.22023 1.01105 0.96940 0.95705 1.19506 0.97189 0.95399 0.92287 1.21440 1.46064 0.96457 0.93208 0.95419 1.26064 0.94869 1.00634 0.97809 1.70079 1.51319 1.31811 1.06129 0.85622 0.79075 0.79363 0.78359 1.19446 1.21421 1.15959 0.89013 0.92773 0.92440 0.87585 0.91250 0.90986 0.86428 0.90155 0.90818 0.74929 0.84175 0.82962 0.93907 0.91405 0.94936 0.95949 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.82 113.37 1.23 1.49 16 2 O -0.40 -7.63 10.28 -148.98 -1.53 -9.16 16 3 C 0.08 1.39 2.20 30.71 0.07 1.46 16 4 H 0.09 1.10 7.79 -2.39 -0.02 1.08 16 5 C -0.17 -2.26 5.76 30.68 0.18 -2.09 16 6 C 0.05 0.71 6.84 72.01 0.49 1.20 16 7 O -0.40 -8.85 10.77 -148.98 -1.60 -10.45 16 8 C 0.06 1.37 6.42 72.01 0.46 1.83 16 9 C 0.12 2.79 2.33 45.08 0.11 2.90 16 10 H 0.07 2.15 7.59 -2.38 -0.02 2.13 16 11 N -0.71 -17.01 5.01 -442.10 -2.21 -19.22 16 12 C 0.53 16.49 7.04 87.66 0.62 17.11 16 13 O -0.57 -22.03 15.92 -3.04 -0.05 -22.08 16 14 C 0.08 2.50 3.21 44.17 0.14 2.64 16 15 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 16 N -0.83 -25.76 8.94 -171.79 -1.54 -27.29 16 17 C -0.12 -4.23 4.78 30.60 0.15 -4.08 16 18 C -0.01 -0.27 3.81 29.85 0.11 -0.15 16 19 C -0.53 -29.55 9.66 25.60 0.25 -29.30 16 20 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 21 C 0.00 0.17 5.47 84.66 0.46 0.63 16 22 N -0.95 -58.79 13.96 21.45 0.30 -58.49 16 23 Si 0.95 42.19 27.47 68.60 1.88 44.07 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 26 H -0.24 -9.32 6.54 99.48 0.65 -8.67 16 27 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.05 0.52 8.09 -2.39 -0.02 0.50 16 29 H 0.06 0.47 7.96 -2.39 -0.02 0.45 16 30 H 0.11 0.89 7.96 -2.39 -0.02 0.87 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.41 7.81 8.60 -92.71 -0.80 7.01 16 37 H 0.35 11.23 8.58 -89.70 -0.77 10.46 16 38 H 0.35 10.25 7.55 -89.70 -0.68 9.58 16 39 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.03 1.31 7.20 -2.39 -0.02 1.29 16 42 H 0.02 0.91 6.30 -2.39 -0.02 0.90 16 43 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -73.64 348.62 -1.76 -75.40 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: -1.27 Total: 33.59 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 4.26 Total: -6.38 kcal Atomic # 7 Polarization: -101.55 SS G_CDS: -3.45 Total: -105.00 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -3.18 Total: -41.69 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.88 Total: 44.07 kcal Total: -73.64 -1.76 -75.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724901185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.358 kcal (2) G-P(sol) polarization free energy of solvation -73.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds