Wall clock time and date at job start Tue Mar 31 2020 02:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47503 * 2 1 4 4 C 1.42902 * 114.00370 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.51975 * 29.87731 * 4 3 2 6 6 C 1.53089 * 109.52245 * 269.68452 * 4 3 2 7 7 O 1.42903 * 109.41332 * 182.48610 * 6 4 3 8 8 C 1.42898 * 114.09853 * 61.15596 * 7 6 4 9 9 C 1.53086 * 109.41587 * 298.84150 * 8 7 6 10 10 C 1.53178 * 109.52092 * 149.99564 * 4 3 2 11 11 H 1.08997 * 109.54364 * 57.02453 * 10 4 3 12 12 N 1.46898 * 109.54913 * 296.84268 * 10 4 3 13 13 C 1.46899 * 111.00257 * 154.99997 * 12 10 4 14 14 C 1.50697 * 109.47297 * 180.02562 * 13 12 10 15 15 O 1.21281 * 119.99861 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00106 * 179.97438 * 14 13 12 17 17 C 1.46501 * 119.99926 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47047 * 180.02562 * 17 16 14 19 19 H 1.07994 * 119.99784 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99910 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99823 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99985 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47174 * 89.99908 * 22 20 18 24 24 H 1.48503 * 109.47075 * 209.99931 * 22 20 18 25 25 H 1.48500 * 109.47378 * 329.99891 * 22 20 18 26 26 H 1.09002 * 109.47153 * 60.00043 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00234 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 119.99957 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99586 * 2 1 3 31 31 H 1.08998 * 109.47796 * 302.46439 * 6 4 3 32 32 H 1.08997 * 109.48284 * 62.50156 * 6 4 3 33 33 H 1.08998 * 109.48068 * 178.85867 * 8 7 6 34 34 H 1.09002 * 109.48083 * 58.82760 * 8 7 6 35 35 H 1.08995 * 109.52288 * 297.70068 * 9 8 7 36 36 H 1.09009 * 109.52299 * 177.51396 * 9 8 7 37 37 H 1.00905 * 110.99503 * 31.04677 * 12 10 4 38 38 H 1.09004 * 109.46706 * 300.00407 * 13 12 10 39 39 H 1.09001 * 109.46901 * 60.00061 * 13 12 10 40 40 H 0.97000 * 120.00073 * 0.02562 * 16 14 13 41 41 H 1.09005 * 109.46819 * 299.99874 * 17 16 14 42 42 H 1.09001 * 109.47555 * 60.00053 * 17 16 14 43 43 H 0.96994 * 119.99998 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8645 0.6007 -0.5109 6 6 3.9397 1.5086 1.4437 7 8 5.3585 1.6796 1.4416 8 6 5.7995 2.8891 0.8215 9 6 5.3654 2.8960 -0.6465 10 6 3.8428 2.7467 -0.7214 11 1 3.3684 3.6023 -0.2408 12 7 3.4226 2.6775 -2.1273 13 6 3.2448 4.0225 -2.6905 14 6 2.8141 3.9113 -4.1303 15 8 2.6691 2.8191 -4.6373 16 7 2.5891 5.0256 -4.8544 17 6 2.1698 4.9175 -6.2539 18 6 1.9875 6.2973 -6.8318 19 1 2.1657 7.1677 -6.2177 20 6 1.5933 6.4485 -8.1443 21 7 1.4337 7.6527 -8.6484 22 14 1.2858 4.9431 -9.2065 23 1 -0.1368 4.5345 -9.0862 24 1 1.5898 5.2666 -10.6236 25 1 2.1601 3.8311 -8.7542 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 3.4736 2.3444 1.9654 32 1 3.6866 0.5771 1.9499 33 1 6.8861 2.9522 0.8796 34 1 5.3577 3.7430 1.3353 35 1 5.8391 2.0658 -1.1703 36 1 5.6623 3.8371 -1.1097 37 1 2.5810 2.1297 -2.2266 38 1 2.4817 4.5558 -2.1235 39 1 4.1870 4.5676 -2.6338 40 1 2.7047 5.8991 -4.4488 41 1 2.9325 4.3841 -6.8215 42 1 1.2276 4.3723 -6.3100 43 1 1.1560 7.7591 -9.5716 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776486150.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:03 Heat of formation + Delta-G solvation = -133.880587 kcal Electronic energy + Delta-G solvation = -23059.467793 eV Core-core repulsion = 19525.539033 eV Total energy + Delta-G solvation = -3533.928759 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.24453 -38.89256 -37.76693 -35.86963 -34.24569 -32.38243 -32.04748 -31.57590 -29.83516 -28.42502 -26.27239 -23.83632 -23.62913 -22.82414 -21.79053 -20.51979 -19.85262 -17.70808 -17.18046 -16.83251 -16.52110 -15.86271 -15.75591 -15.64348 -15.26875 -14.99003 -14.69458 -14.28291 -13.89169 -13.80495 -13.33982 -13.15405 -12.94088 -12.73580 -12.56524 -12.49368 -12.23033 -11.96049 -11.79462 -11.56152 -11.40088 -11.14515 -11.02204 -10.76163 -10.70516 -10.30912 -9.97030 -9.57894 -9.49364 -9.18262 -8.77896 -8.49016 -8.12790 -6.21751 -4.23957 3.11805 3.24210 3.27812 3.33408 3.42561 3.57892 3.73115 4.28433 4.32915 4.34112 4.50464 4.73054 4.79153 4.80712 4.91812 4.93760 5.09451 5.12330 5.13580 5.19491 5.30611 5.32471 5.40426 5.44079 5.46155 5.53109 5.55909 5.65339 5.72566 5.87935 5.99722 6.66902 6.75436 6.89745 6.97727 7.07842 7.24042 7.33473 7.40323 8.14374 8.52268 8.75319 8.95421 9.38593 10.90242 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.021762 B = 0.003239 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.324278 B = 8642.550131 C = 9528.444787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.380 6.380 4 C 0.055 3.945 5 H 0.080 0.920 6 C 0.046 3.954 7 O -0.377 6.377 8 C 0.058 3.942 9 C -0.145 4.145 10 C 0.091 3.909 11 H 0.054 0.946 12 N -0.664 5.664 13 C 0.041 3.959 14 C 0.500 3.500 15 O -0.546 6.546 16 N -0.707 5.707 17 C 0.221 3.779 18 C -0.544 4.544 19 H 0.079 0.921 20 C 0.077 3.923 21 N -0.893 5.893 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.260 1.260 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.358 0.642 38 H 0.057 0.943 39 H 0.097 0.903 40 H 0.396 0.604 41 H 0.025 0.975 42 H 0.020 0.980 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.428 -11.776 22.233 25.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.299 6.299 4 C -0.004 4.004 5 H 0.098 0.902 6 C -0.032 4.032 7 O -0.296 6.296 8 C -0.019 4.019 9 C -0.183 4.183 10 C -0.019 4.019 11 H 0.072 0.928 12 N -0.298 5.298 13 C -0.092 4.092 14 C 0.284 3.716 15 O -0.424 6.424 16 N -0.357 5.357 17 C 0.099 3.901 18 C -0.581 4.581 19 H 0.097 0.903 20 C -0.127 4.127 21 N -0.530 5.530 22 Si 0.704 3.296 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.185 1.185 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.179 0.821 38 H 0.075 0.925 39 H 0.115 0.885 40 H 0.229 0.771 41 H 0.043 0.957 42 H 0.038 0.962 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.887 -12.497 21.492 25.337 hybrid contribution -1.046 0.138 -0.232 1.080 sum 3.841 -12.359 21.261 24.890 Atomic orbital electron populations 1.21754 0.93526 1.02381 1.03302 1.22573 0.95747 0.83361 1.00332 1.87901 1.19985 1.27081 1.94935 1.22929 0.81832 0.99366 0.96258 0.90172 1.23003 0.81726 1.02644 0.95858 1.87952 1.20952 1.41514 1.79159 1.22697 1.00430 0.86805 0.92010 1.22290 0.94710 1.04301 0.97004 1.21634 0.95636 0.96018 0.88646 0.92821 1.60191 1.41295 1.13415 1.14851 1.21868 1.01852 0.91728 0.93730 1.20381 0.78293 0.85048 0.87890 1.90651 1.52320 1.27032 1.72403 1.46161 1.67526 1.07745 1.14240 1.19475 0.94975 0.98168 0.77460 1.21100 1.48270 0.91090 0.97682 0.90269 1.24801 0.94185 0.96131 0.97537 1.69879 1.46309 1.21547 1.15283 0.86808 0.79551 0.83527 0.79756 1.19871 1.20887 1.18478 0.91507 0.91962 0.91011 0.93414 0.92755 0.92261 0.88705 0.88239 0.92962 0.89795 0.90047 0.82129 0.92500 0.88504 0.77089 0.95701 0.96250 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 37.16 0.38 -0.83 16 2 C 0.06 0.49 6.47 37.16 0.24 0.73 16 3 O -0.38 -4.09 9.29 -35.23 -0.33 -4.42 16 4 C 0.05 0.55 2.31 -26.59 -0.06 0.49 16 5 H 0.08 0.85 7.79 -51.93 -0.40 0.45 16 6 C 0.05 0.40 6.47 37.20 0.24 0.64 16 7 O -0.38 -3.73 10.77 -35.23 -0.38 -4.11 16 8 C 0.06 0.47 6.84 37.20 0.25 0.72 16 9 C -0.14 -1.36 5.63 -26.59 -0.15 -1.51 16 10 C 0.09 0.98 2.28 -67.53 -0.15 0.83 16 11 H 0.05 0.57 7.80 -51.93 -0.41 0.17 16 12 N -0.66 -9.09 5.94 -107.80 -0.64 -9.73 16 13 C 0.04 0.57 5.97 -4.98 -0.03 0.54 16 14 C 0.50 9.58 7.87 -10.99 -0.09 9.49 16 15 O -0.55 -12.59 16.20 5.56 0.09 -12.50 16 16 N -0.71 -14.37 5.55 -61.47 -0.34 -14.71 16 17 C 0.22 5.50 4.50 -5.19 -0.02 5.48 16 18 C -0.54 -14.98 9.83 -34.44 -0.34 -15.32 16 19 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 20 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 21 N -0.89 -26.60 13.96 55.43 0.77 -25.82 16 22 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.34 7.96 -51.93 -0.41 -0.07 16 30 H 0.05 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.72 7.96 -51.93 -0.41 0.31 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.72 7.58 -51.92 -0.39 0.32 16 37 H 0.36 5.37 7.48 -39.29 -0.29 5.07 16 38 H 0.06 0.70 8.06 -51.93 -0.42 0.29 16 39 H 0.10 1.16 7.54 -51.93 -0.39 0.77 16 40 H 0.40 7.01 8.32 -40.82 -0.34 6.67 16 41 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 42 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 350.33 15.07 5.28 5.28 Total: -1.00 -32.78 350.33 -7.23 -40.02 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -7.20 Total: 5.72 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 0.18 Total: 3.35 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.21 Total: -50.26 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.62 Total: -21.03 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.78 -7.23 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776486150.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.862 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds