Wall clock time and date at job start Tue Mar 31 2020 02:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47503 * 2 1 4 4 C 1.42902 * 114.00370 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.51975 * 29.87731 * 4 3 2 6 6 C 1.53089 * 109.52245 * 269.68452 * 4 3 2 7 7 O 1.42903 * 109.41332 * 182.48610 * 6 4 3 8 8 C 1.42898 * 114.09853 * 61.15596 * 7 6 4 9 9 C 1.53086 * 109.41587 * 298.84150 * 8 7 6 10 10 C 1.53178 * 109.52092 * 149.99564 * 4 3 2 11 11 H 1.08997 * 109.54364 * 57.02453 * 10 4 3 12 12 N 1.46898 * 109.54913 * 296.84268 * 10 4 3 13 13 C 1.46899 * 111.00257 * 154.99997 * 12 10 4 14 14 C 1.50697 * 109.47297 * 180.02562 * 13 12 10 15 15 O 1.21281 * 119.99861 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00106 * 179.97438 * 14 13 12 17 17 C 1.46501 * 119.99926 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47047 * 180.02562 * 17 16 14 19 19 H 1.07994 * 119.99784 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99910 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99823 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99985 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47174 * 89.99908 * 22 20 18 24 24 H 1.48503 * 109.47075 * 209.99931 * 22 20 18 25 25 H 1.48500 * 109.47378 * 329.99891 * 22 20 18 26 26 H 1.09002 * 109.47153 * 60.00043 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00234 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 119.99957 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99586 * 2 1 3 31 31 H 1.08998 * 109.47796 * 302.46439 * 6 4 3 32 32 H 1.08997 * 109.48284 * 62.50156 * 6 4 3 33 33 H 1.08998 * 109.48068 * 178.85867 * 8 7 6 34 34 H 1.09002 * 109.48083 * 58.82760 * 8 7 6 35 35 H 1.08995 * 109.52288 * 297.70068 * 9 8 7 36 36 H 1.09009 * 109.52299 * 177.51396 * 9 8 7 37 37 H 1.00905 * 110.99503 * 31.04677 * 12 10 4 38 38 H 1.09004 * 109.46706 * 300.00407 * 13 12 10 39 39 H 1.09001 * 109.46901 * 60.00061 * 13 12 10 40 40 H 0.97000 * 120.00073 * 0.02562 * 16 14 13 41 41 H 1.09005 * 109.46819 * 299.99874 * 17 16 14 42 42 H 1.09001 * 109.47555 * 60.00053 * 17 16 14 43 43 H 0.96994 * 119.99998 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8645 0.6007 -0.5109 6 6 3.9397 1.5086 1.4437 7 8 5.3585 1.6796 1.4416 8 6 5.7995 2.8891 0.8215 9 6 5.3654 2.8960 -0.6465 10 6 3.8428 2.7467 -0.7214 11 1 3.3684 3.6023 -0.2408 12 7 3.4226 2.6775 -2.1273 13 6 3.2448 4.0225 -2.6905 14 6 2.8141 3.9113 -4.1303 15 8 2.6691 2.8191 -4.6373 16 7 2.5891 5.0256 -4.8544 17 6 2.1698 4.9175 -6.2539 18 6 1.9875 6.2973 -6.8318 19 1 2.1657 7.1677 -6.2177 20 6 1.5933 6.4485 -8.1443 21 7 1.4337 7.6527 -8.6484 22 14 1.2858 4.9431 -9.2065 23 1 -0.1368 4.5345 -9.0862 24 1 1.5898 5.2666 -10.6236 25 1 2.1601 3.8311 -8.7542 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 3.4736 2.3444 1.9654 32 1 3.6866 0.5771 1.9499 33 1 6.8861 2.9522 0.8796 34 1 5.3577 3.7430 1.3353 35 1 5.8391 2.0658 -1.1703 36 1 5.6623 3.8371 -1.1097 37 1 2.5810 2.1297 -2.2266 38 1 2.4817 4.5558 -2.1235 39 1 4.1870 4.5676 -2.6338 40 1 2.7047 5.8991 -4.4488 41 1 2.9325 4.3841 -6.8215 42 1 1.2276 4.3723 -6.3100 43 1 1.1560 7.7591 -9.5716 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776486150.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:02 Heat of formation + Delta-G solvation = -160.422596 kcal Electronic energy + Delta-G solvation = -23060.618740 eV Core-core repulsion = 19525.539033 eV Total energy + Delta-G solvation = -3535.079707 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.08190 -40.38787 -38.48877 -36.90012 -36.07695 -34.41484 -32.90266 -32.35134 -30.65551 -30.13430 -27.54953 -24.71013 -24.50576 -23.75281 -23.35590 -21.52113 -21.25265 -19.26024 -18.27969 -17.83249 -17.56178 -17.20315 -17.00256 -16.62641 -16.37819 -16.11892 -15.87105 -15.53282 -15.29216 -14.79797 -14.65906 -14.33901 -14.23247 -13.98172 -13.83244 -13.34320 -13.31148 -13.16389 -13.06186 -12.70988 -12.47332 -12.41607 -12.12980 -11.94516 -11.83845 -11.66884 -11.46856 -10.99638 -10.92993 -10.81371 -10.27895 -9.94593 -9.49015 -8.41108 -6.48041 1.31708 1.34129 1.46874 1.72455 2.26526 2.30285 2.41811 2.94271 2.99571 3.17485 3.56766 3.77945 3.90878 4.00032 4.07079 4.15113 4.18289 4.28024 4.32390 4.37614 4.45399 4.47028 4.57703 4.65247 4.71927 4.78021 4.82676 4.85331 5.00218 5.01854 5.03979 5.22666 5.24916 5.26132 5.51171 5.85907 5.99980 6.09394 6.22460 6.28641 6.53066 6.85183 7.14962 7.41483 8.73645 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.021762 B = 0.003239 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.324278 B = 8642.550131 C = 9528.444787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.395 6.395 4 C 0.057 3.943 5 H 0.069 0.931 6 C 0.050 3.950 7 O -0.392 6.392 8 C 0.058 3.942 9 C -0.141 4.141 10 C 0.090 3.910 11 H 0.061 0.939 12 N -0.677 5.677 13 C 0.054 3.946 14 C 0.498 3.502 15 O -0.587 6.587 16 N -0.706 5.706 17 C 0.233 3.767 18 C -0.547 4.547 19 H 0.060 0.940 20 C 0.026 3.974 21 N -0.931 5.931 22 Si 0.937 3.063 23 H -0.265 1.265 24 H -0.272 1.272 25 H -0.262 1.262 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.348 0.652 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.409 0.591 41 H 0.011 0.989 42 H 0.010 0.990 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.819 -12.404 23.768 27.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.315 6.315 4 C -0.001 4.001 5 H 0.087 0.913 6 C -0.028 4.028 7 O -0.311 6.311 8 C -0.019 4.019 9 C -0.179 4.179 10 C -0.019 4.019 11 H 0.079 0.921 12 N -0.310 5.310 13 C -0.078 4.078 14 C 0.285 3.715 15 O -0.467 6.467 16 N -0.357 5.357 17 C 0.109 3.891 18 C -0.585 4.585 19 H 0.079 0.921 20 C -0.174 4.174 21 N -0.570 5.570 22 Si 0.761 3.239 23 H -0.190 1.190 24 H -0.197 1.197 25 H -0.186 1.186 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.167 0.833 38 H 0.098 0.902 39 H 0.141 0.859 40 H 0.245 0.755 41 H 0.029 0.971 42 H 0.028 0.972 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.293 -13.104 23.066 27.052 hybrid contribution -1.155 0.354 -0.654 1.374 sum 4.138 -12.750 22.412 26.115 Atomic orbital electron populations 1.21763 0.93041 1.03366 1.02559 1.22712 0.96171 0.82701 1.00910 1.87877 1.20280 1.28247 1.95064 1.22907 0.81643 0.98576 0.96999 0.91283 1.23013 0.81336 1.03568 0.94896 1.87940 1.21419 1.42444 1.79276 1.22818 1.01490 0.86692 0.90908 1.22271 0.93488 1.04107 0.98046 1.21750 0.96516 0.96690 0.86966 0.92111 1.60228 1.40831 1.13084 1.16900 1.21816 1.03577 0.92570 0.89807 1.21282 0.76750 0.83739 0.89690 1.90631 1.53867 1.28505 1.73720 1.46008 1.67773 1.09144 1.12761 1.19071 0.94108 0.96065 0.79865 1.21298 1.47665 0.91757 0.97737 0.92147 1.25597 0.94062 0.98762 0.98970 1.69976 1.47476 1.23488 1.16022 0.85858 0.79659 0.79929 0.78444 1.18990 1.19721 1.18643 0.93211 0.91644 0.89222 0.91554 0.93435 0.91624 0.87572 0.86705 0.91583 0.91310 0.89162 0.83283 0.90223 0.85938 0.75524 0.97124 0.97232 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 10.28 71.98 0.74 -1.50 16 2 C 0.05 0.84 6.47 71.98 0.47 1.31 16 3 O -0.39 -8.10 9.29 -148.98 -1.38 -9.48 16 4 C 0.06 1.09 2.31 30.68 0.07 1.16 16 5 H 0.07 1.44 7.79 -2.39 -0.02 1.42 16 6 C 0.05 0.78 6.47 72.01 0.47 1.24 16 7 O -0.39 -6.94 10.77 -148.98 -1.60 -8.55 16 8 C 0.06 0.79 6.84 72.01 0.49 1.28 16 9 C -0.14 -2.36 5.63 30.68 0.17 -2.19 16 10 C 0.09 1.79 2.28 45.04 0.10 1.89 16 11 H 0.06 1.13 7.80 -2.39 -0.02 1.11 16 12 N -0.68 -17.71 5.94 -494.96 -2.94 -20.65 16 13 C 0.05 1.39 5.97 85.56 0.51 1.91 16 14 C 0.50 18.65 7.87 87.66 0.69 19.34 16 15 O -0.59 -27.02 16.20 -3.03 -0.05 -27.07 16 16 N -0.71 -28.20 5.55 -466.78 -2.59 -30.79 16 17 C 0.23 11.55 4.50 85.63 0.38 11.93 16 18 C -0.55 -30.32 9.83 25.60 0.25 -30.07 16 19 H 0.06 3.50 7.84 -2.91 -0.02 3.47 16 20 C 0.03 1.50 5.47 84.66 0.46 1.97 16 21 N -0.93 -55.73 13.96 21.45 0.30 -55.43 16 22 Si 0.94 44.45 27.47 68.60 1.88 46.34 16 23 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 25 H -0.26 -12.41 6.54 99.48 0.65 -11.76 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.07 0.83 7.96 -2.39 -0.02 0.81 16 30 H 0.05 0.83 8.09 -2.39 -0.02 0.81 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.11 1.39 7.96 -2.39 -0.02 1.37 16 33 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.09 1.34 7.58 -2.38 -0.02 1.33 16 37 H 0.35 10.28 7.48 -89.69 -0.67 9.61 16 38 H 0.08 1.74 8.06 -2.38 -0.02 1.72 16 39 H 0.12 2.56 7.54 -2.39 -0.02 2.55 16 40 H 0.41 14.06 8.32 -92.71 -0.77 13.29 16 41 H 0.01 0.57 7.20 -2.38 -0.02 0.55 16 42 H 0.01 0.50 7.57 -2.39 -0.02 0.49 16 43 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -70.23 350.33 -2.06 -72.29 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -0.49 Total: 25.08 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 4.81 Total: 8.26 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -5.23 Total: -106.87 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -3.04 Total: -45.10 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.34 kcal Total: -70.23 -2.06 -72.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776486150.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.129 kcal (2) G-P(sol) polarization free energy of solvation -70.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds