Wall clock time and date at job start Tue Mar 31 2020 03:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99799 * 2 1 4 4 H 1.48493 * 109.47120 * 270.00410 * 3 2 1 5 5 H 1.48492 * 109.47027 * 30.00555 * 3 2 1 6 6 H 1.48500 * 109.46527 * 150.00193 * 3 2 1 7 7 C 1.37875 * 119.99668 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00246 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99539 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.46543 * 179.97438 * 9 7 2 11 11 S 1.65603 * 119.99510 * 164.63976 * 10 9 7 12 12 O 1.42102 * 106.40300 * 309.29485 * 11 10 9 13 13 O 1.42097 * 106.40066 * 176.37714 * 11 10 9 14 14 C 1.76199 * 107.21810 * 62.83551 * 11 10 9 15 15 C 1.38670 * 120.41903 * 246.23292 * 14 11 10 16 16 C 1.38633 * 118.42239 * 180.23198 * 15 14 11 17 17 C 1.38226 * 119.15789 * 359.52340 * 16 15 14 18 18 N 1.31862 * 120.76331 * 0.48783 * 17 16 15 19 19 C 1.31878 * 121.72534 * 359.74172 * 18 17 16 20 20 N 1.48022 * 119.61846 * 179.97438 * 19 18 17 21 21 O 1.21795 * 119.99993 * 146.18301 * 20 19 18 22 22 O 1.21797 * 119.99668 * 326.18991 * 20 19 18 23 23 H 0.97002 * 120.00029 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46919 * 60.00131 * 9 7 2 25 25 H 1.08993 * 109.47049 * 299.99755 * 9 7 2 26 26 H 0.96991 * 120.00625 * 344.63713 * 10 9 7 27 27 H 1.08002 * 120.78972 * 359.95932 * 15 14 11 28 28 H 1.07991 * 120.42142 * 179.73032 * 16 15 14 29 29 H 1.08001 * 119.62006 * 180.24959 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 16 5.5795 -2.8951 -0.3814 12 8 5.8416 -2.2223 -1.6054 13 8 5.7582 -4.2943 -0.2100 14 6 6.5790 -2.1124 0.8405 15 6 7.4103 -1.0570 0.4970 16 6 8.1824 -0.4748 1.4904 17 6 8.0910 -0.9558 2.7831 18 7 7.2892 -1.9615 3.0734 19 6 6.5440 -2.5423 2.1533 20 7 5.6606 -3.6683 2.5310 21 8 4.5907 -3.8180 1.9687 22 8 6.0038 -4.4451 3.4041 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8745 -0.6801 -0.8911 26 1 3.3980 -3.3025 0.2219 27 1 7.4586 -0.7000 -0.5212 28 1 8.8443 0.3462 1.2579 29 1 8.6861 -0.5051 3.5636 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785300026.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:29 Heat of formation + Delta-G solvation = -11.367328 kcal Electronic energy + Delta-G solvation = -21255.614058 eV Core-core repulsion = 17696.825549 eV Total energy + Delta-G solvation = -3558.788509 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 287.045 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.43059 -40.67161 -37.22231 -36.62320 -35.78894 -34.85983 -33.56026 -32.72732 -32.26294 -27.48004 -27.42099 -24.93315 -23.43749 -22.11656 -20.06671 -19.59623 -18.98472 -18.02542 -18.00104 -17.51184 -16.83732 -16.25771 -16.07224 -15.65320 -14.84045 -14.66581 -14.33329 -13.72115 -13.52828 -13.09565 -12.59683 -12.19941 -12.02992 -11.97623 -11.92462 -11.68301 -11.36351 -11.11218 -11.02150 -10.98410 -10.71895 -10.45257 -10.37820 -10.07811 -9.58395 -8.96666 -8.59019 -6.23625 -4.24848 -0.65480 0.08984 0.42236 0.79471 0.90677 2.66166 3.13616 3.15991 3.19151 3.24505 3.57871 3.64647 3.79057 4.06020 4.23711 4.26093 4.43605 4.74639 5.01112 5.08706 5.15334 5.51739 5.98593 6.13763 6.64360 6.69253 6.77839 7.31057 7.47990 7.87712 8.32627 8.81023 9.33272 10.88863 Molecular weight = 287.05amu Principal moments of inertia in cm(-1) A = 0.017236 B = 0.007192 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.156179 B = 3892.155846 C = 4192.439341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.871 3.129 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.527 4.527 8 H 0.088 0.912 9 C 0.217 3.783 10 N -1.065 6.065 11 S 2.684 3.316 12 O -0.947 6.947 13 O -0.955 6.955 14 C -0.672 4.672 15 C 0.027 3.973 16 C -0.150 4.150 17 C 0.159 3.841 18 N -0.447 5.447 19 C 0.277 3.723 20 N 0.016 4.984 21 O -0.123 6.123 22 O -0.097 6.097 23 H 0.268 0.732 24 H 0.012 0.988 25 H 0.032 0.968 26 H 0.428 0.572 27 H 0.179 0.821 28 H 0.168 0.832 29 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.886 1.139 3.284 18.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.128 4.128 3 Si 0.697 3.303 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.566 4.566 8 H 0.106 0.894 9 C 0.092 3.908 10 N -0.832 5.832 11 S 2.763 3.237 12 O -0.936 6.936 13 O -0.944 6.944 14 C -0.755 4.755 15 C 0.000 4.000 16 C -0.170 4.170 17 C 0.002 3.998 18 N -0.161 5.161 19 C 0.058 3.942 20 N 0.543 4.457 21 O -0.336 6.336 22 O -0.325 6.325 23 H 0.078 0.922 24 H 0.029 0.971 25 H 0.050 0.950 26 H 0.268 0.732 27 H 0.197 0.803 28 H 0.185 0.815 29 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 18.540 1.234 3.221 18.858 hybrid contribution 0.159 1.230 0.240 1.263 sum 18.699 2.464 3.461 19.176 Atomic orbital electron populations 1.69869 1.06057 1.27264 1.49391 1.24843 0.94813 0.98815 0.94340 0.86940 0.80205 0.84078 0.79047 1.19458 1.20701 1.19369 1.21004 0.87671 0.95485 1.52428 0.89387 1.19487 0.98318 0.77223 0.95748 1.55143 1.24348 1.17428 1.86309 1.02634 0.73704 0.73373 0.73978 1.93595 1.85182 1.76261 1.38597 1.93618 1.85869 1.28586 1.86354 1.32333 1.17884 1.12210 1.13067 1.21689 0.87865 0.88196 1.02238 1.22704 0.99526 1.00976 0.93781 1.23176 0.91419 0.88580 0.96597 1.66630 1.04774 1.09027 1.35635 1.20963 0.93512 0.90344 0.89415 1.43345 1.00837 1.00936 1.00547 1.94621 1.07513 1.77965 1.53493 1.94550 1.77730 1.37950 1.22266 0.92218 0.97073 0.95029 0.73221 0.80327 0.81462 0.79456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.93 13.96 55.43 0.77 -25.15 15 2 C 0.08 2.08 5.47 -17.82 -0.10 1.98 15 3 Si 0.87 20.00 27.47 -169.99 -4.67 15.33 15 4 H -0.27 -6.04 7.11 56.52 0.40 -5.63 15 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 6 H -0.27 -5.78 6.54 56.52 0.37 -5.41 15 7 C -0.53 -14.09 9.83 -34.44 -0.34 -14.43 15 8 H 0.09 2.51 7.90 -52.49 -0.41 2.09 15 9 C 0.22 4.88 5.02 -5.19 -0.03 4.85 15 10 N -1.06 -21.14 4.38 -11.66 -0.05 -21.19 15 11 S 2.68 47.75 4.90 -107.50 -0.53 47.22 15 12 O -0.95 -17.61 16.59 -57.17 -0.95 -18.56 15 13 O -0.95 -18.52 16.10 -66.11 -1.06 -19.58 15 14 C -0.67 -10.23 5.85 -39.44 -0.23 -10.46 15 15 C 0.03 0.29 9.66 -39.28 -0.38 -0.09 15 16 C -0.15 -1.14 10.11 -39.44 -0.40 -1.54 15 17 C 0.16 1.41 11.18 -17.54 -0.20 1.21 15 18 N -0.45 -6.21 10.24 -10.29 -0.11 -6.31 15 19 C 0.28 4.52 7.45 -146.19 -1.09 3.43 15 20 N 0.02 0.29 3.99 32.87 0.13 0.42 15 21 O -0.12 -2.36 13.23 -36.36 -0.48 -2.84 15 22 O -0.10 -1.76 19.17 -29.46 -0.56 -2.33 15 23 H 0.27 7.28 8.31 -40.82 -0.34 6.94 15 24 H 0.01 0.25 7.20 -51.93 -0.37 -0.12 15 25 H 0.03 0.70 7.22 -51.93 -0.38 0.32 15 26 H 0.43 8.29 7.34 -34.47 -0.25 8.03 15 27 H 0.18 1.59 7.44 -52.49 -0.39 1.20 15 28 H 0.17 0.50 8.06 -52.49 -0.42 0.08 15 29 H 0.19 0.77 8.06 -52.49 -0.42 0.35 15 LS Contribution 276.88 15.07 4.17 4.17 Total: -1.00 -34.12 276.88 -7.91 -42.03 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -1.82 Total: 1.83 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -2.76 Total: -15.04 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.75 Total: -52.24 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -3.06 Total: -43.31 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.67 Total: 15.33 kcal Atomic # 16 Polarization: 47.75 SS G_CDS: -0.53 Total: 47.22 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -34.12 -7.91 -42.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785300026.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.660 kcal (2) G-P(sol) polarization free energy of solvation -34.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds