Wall clock time and date at job start Tue Mar 31 2020 03:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34181 * 127.02059 * 2 1 4 4 O 1.34218 * 109.12177 * 179.97438 * 3 2 1 5 5 C 1.33649 * 110.90797 * 359.97438 * 4 3 2 6 6 C 1.50702 * 125.79904 * 180.02562 * 5 4 3 7 7 C 1.36417 * 108.39826 * 359.75015 * 5 4 3 8 8 C 1.47381 * 127.19104 * 180.26443 * 7 5 4 9 9 O 1.21616 * 120.00100 * 270.12959 * 8 7 5 10 10 N 1.34779 * 120.00123 * 90.13250 * 8 7 5 11 11 S 1.65596 * 120.00041 * 179.97438 * 10 8 7 12 12 O 1.42105 * 104.27399 * 181.06988 * 11 10 8 13 13 O 1.42097 * 104.27939 * 308.93309 * 11 10 8 14 14 C 1.81405 * 104.44768 * 65.00434 * 11 10 8 15 15 C 1.50698 * 109.47150 * 180.02562 * 14 11 10 16 16 H 1.08004 * 119.99703 * 359.97438 * 15 14 11 17 17 C 1.37873 * 120.00080 * 180.02562 * 15 14 11 18 18 N 1.31517 * 120.00185 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00211 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47449 * 89.99883 * 19 17 15 21 21 H 1.48504 * 109.47286 * 210.00033 * 19 17 15 22 22 H 1.48500 * 109.47100 * 329.99571 * 19 17 15 23 23 H 1.09002 * 109.47152 * 90.02784 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.02885 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.02866 * 1 2 3 26 26 H 1.07997 * 125.43877 * 359.97438 * 3 2 1 27 27 H 1.08992 * 109.47638 * 359.97398 * 6 5 4 28 28 H 1.09008 * 109.47068 * 119.97369 * 6 5 4 29 29 H 1.09005 * 109.47179 * 239.96908 * 6 5 4 30 30 H 0.97000 * 119.99607 * 359.97438 * 10 8 7 31 31 H 1.09007 * 109.46887 * 299.99339 * 14 11 10 32 32 H 1.08996 * 109.47269 * 59.99498 * 14 11 10 33 33 H 0.96997 * 120.00207 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5922 0.6588 0.0006 5 6 3.6623 -0.6758 0.0015 6 6 4.9292 -1.4920 0.0029 7 6 2.3923 -1.1737 0.0072 8 6 1.9914 -2.5920 0.0156 9 8 1.8257 -3.1833 -1.0341 10 7 1.8084 -3.2336 1.1866 11 16 1.3574 -4.8270 1.1960 12 8 1.2378 -5.1491 2.5749 13 8 0.2308 -4.8774 0.3314 14 6 2.7657 -5.7004 0.4582 15 6 2.4717 -7.1776 0.4105 16 1 1.5317 -7.5535 0.7868 17 6 3.4029 -8.0494 -0.1126 18 7 4.5478 -7.5917 -0.5705 19 14 3.0388 -9.8805 -0.1711 20 1 2.3729 -10.2121 -1.4564 21 1 4.3091 -10.6417 -0.0610 22 1 2.1448 -10.2437 0.9577 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 0.8903 0.5134 25 1 -0.3633 -0.8898 0.5143 26 1 1.9895 2.1011 -0.0004 27 1 5.7912 -0.8249 0.0026 28 1 4.9560 -2.1198 0.8936 29 1 4.9567 -2.1217 -0.8864 30 1 1.9409 -2.7621 2.0239 31 1 2.9328 -5.3308 -0.5536 32 1 3.6573 -5.5262 1.0605 33 1 5.2028 -8.2050 -0.9388 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821582710.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:25 Heat of formation + Delta-G solvation = -107.231278 kcal Electronic energy + Delta-G solvation = -20888.932557 eV Core-core repulsion = 17429.527418 eV Total energy + Delta-G solvation = -3459.405138 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.68139 -39.48229 -36.26418 -35.19387 -34.26416 -33.81323 -33.37093 -32.54826 -29.08528 -28.31912 -26.65056 -24.00059 -23.47121 -20.58173 -19.88615 -19.22071 -18.06768 -17.27998 -16.59328 -16.29981 -16.06177 -15.68132 -14.91331 -14.58643 -14.49716 -14.23779 -13.72262 -13.39237 -13.36161 -13.00462 -12.79262 -12.56856 -12.46284 -12.21796 -11.99523 -11.51285 -11.47650 -11.31300 -11.21943 -10.92217 -10.66763 -10.49949 -10.18859 -9.84063 -9.55498 -9.19459 -8.72153 -8.60430 -6.34936 -4.45924 0.98430 1.51735 2.10902 2.26482 2.72061 3.21323 3.22199 3.27790 3.32644 4.20508 4.29564 4.42326 4.61128 4.75873 4.92433 4.98384 5.16015 5.17770 5.28077 5.38475 5.44055 5.52864 5.58934 5.72491 5.82860 6.03732 6.26471 6.55321 6.72717 6.91877 6.99050 7.40218 7.69886 7.74472 8.54903 9.21565 10.76945 Molecular weight = 287.07amu Principal moments of inertia in cm(-1) A = 0.025261 B = 0.005007 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.173742 B = 5590.578379 C = 6214.573420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.143 4.143 3 C -0.043 4.043 4 O -0.172 6.172 5 C 0.055 3.945 6 C -0.089 4.089 7 C -0.238 4.238 8 C 0.615 3.385 9 O -0.476 6.476 10 N -1.054 6.054 11 S 2.551 3.449 12 O -0.967 6.967 13 O -0.951 6.951 14 C -0.404 4.404 15 C -0.535 4.535 16 H 0.071 0.929 17 C 0.078 3.922 18 N -0.877 5.877 19 Si 0.907 3.093 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.266 1.266 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.208 0.792 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.426 0.574 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.015 17.097 2.746 17.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C -0.109 4.109 4 O -0.068 6.068 5 C 0.003 3.997 6 C -0.145 4.145 7 C -0.244 4.244 8 C 0.399 3.601 9 O -0.346 6.346 10 N -0.813 5.813 11 S 2.654 3.346 12 O -0.958 6.958 13 O -0.942 6.942 14 C -0.540 4.540 15 C -0.574 4.574 16 H 0.089 0.911 17 C -0.129 4.129 18 N -0.513 5.513 19 Si 0.733 3.267 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.190 1.190 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.224 0.776 27 H 0.103 0.897 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.260 0.740 31 H 0.117 0.883 32 H 0.104 0.896 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.600 16.540 2.217 16.699 hybrid contribution 0.342 -0.545 0.143 0.659 sum -0.258 15.995 2.360 16.170 Atomic orbital electron populations 1.20251 0.88515 1.02994 1.02941 1.21339 0.96880 0.90310 1.05936 1.23585 0.79581 0.99423 1.08324 1.83733 1.29563 1.21799 1.71712 1.22595 0.95967 0.80729 1.00377 1.20587 0.90760 0.97931 1.05248 1.20960 0.93607 0.93623 1.16178 1.17138 0.74452 0.85623 0.82869 1.91015 1.45688 1.67295 1.30560 1.55515 1.77293 1.33995 1.14471 1.07221 0.79619 0.72624 0.75176 1.93525 1.87592 1.81326 1.33331 1.93532 1.49067 1.83803 1.67756 1.27607 1.10218 1.07421 1.08797 1.20283 1.04350 0.87726 1.45077 0.91105 1.24910 0.94382 0.99955 0.93611 1.69947 1.06909 1.35934 1.38520 0.86333 0.78217 0.82901 0.79283 1.19812 1.20575 1.19049 0.90680 0.91013 0.91163 0.77590 0.89660 0.88638 0.88317 0.74012 0.88335 0.89608 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 10.38 36.01 0.37 -0.58 16 2 C -0.14 -1.75 6.38 -102.49 -0.65 -2.40 16 3 C -0.04 -0.43 11.96 29.30 0.35 -0.08 16 4 O -0.17 -1.97 10.52 7.65 0.08 -1.89 16 5 C 0.06 0.70 7.37 -34.96 -0.26 0.44 16 6 C -0.09 -0.93 10.17 36.01 0.37 -0.56 16 7 C -0.24 -3.48 6.07 -103.28 -0.63 -4.11 16 8 C 0.61 11.01 7.15 -12.54 -0.09 10.92 16 9 O -0.48 -10.45 15.21 -11.86 -0.18 -10.63 16 10 N -1.05 -17.77 5.60 30.42 0.17 -17.60 16 11 S 2.55 55.79 5.03 -107.50 -0.54 55.25 16 12 O -0.97 -22.16 18.08 -57.54 -1.04 -23.20 16 13 O -0.95 -23.87 17.04 -64.79 -1.10 -24.97 16 14 C -0.40 -9.95 5.64 36.00 0.20 -9.75 16 15 C -0.53 -14.91 9.13 -34.44 -0.31 -15.22 16 16 H 0.07 1.93 7.71 -52.48 -0.40 1.53 16 17 C 0.08 2.16 5.46 -17.82 -0.10 2.06 16 18 N -0.88 -24.75 13.29 55.43 0.74 -24.01 16 19 Si 0.91 21.02 29.54 -169.99 -5.02 16.00 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.21 1.14 8.06 -52.49 -0.42 0.72 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.10 0.92 8.14 -51.92 -0.42 0.50 16 29 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.43 5.46 8.77 -34.47 -0.30 5.16 16 31 H 0.10 2.54 7.19 -51.92 -0.37 2.17 16 32 H 0.09 2.01 8.14 -51.93 -0.42 1.58 16 33 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 312.37 15.07 4.71 4.71 Total: -1.00 -36.23 312.37 -6.53 -42.77 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -3.60 Total: 2.86 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -0.75 Total: -19.29 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.91 Total: -41.61 kcal Atomic # 8 Polarization: -58.44 SS G_CDS: -2.24 Total: -60.69 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 55.79 SS G_CDS: -0.54 Total: 55.25 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -36.23 -6.53 -42.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821582710.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.465 kcal (2) G-P(sol) polarization free energy of solvation -36.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds