Wall clock time and date at job start Tue Mar 31 2020 03:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34181 * 127.02059 * 2 1 4 4 O 1.34218 * 109.12177 * 179.97438 * 3 2 1 5 5 C 1.33649 * 110.90797 * 359.97438 * 4 3 2 6 6 C 1.50702 * 125.79904 * 180.02562 * 5 4 3 7 7 C 1.36417 * 108.39826 * 359.75015 * 5 4 3 8 8 C 1.47381 * 127.19104 * 180.26443 * 7 5 4 9 9 O 1.21616 * 120.00100 * 270.12959 * 8 7 5 10 10 N 1.34779 * 120.00123 * 90.13250 * 8 7 5 11 11 S 1.65596 * 120.00041 * 179.97438 * 10 8 7 12 12 O 1.42105 * 104.27399 * 181.06988 * 11 10 8 13 13 O 1.42097 * 104.27939 * 308.93309 * 11 10 8 14 14 C 1.81405 * 104.44768 * 65.00434 * 11 10 8 15 15 C 1.50698 * 109.47150 * 180.02562 * 14 11 10 16 16 H 1.08004 * 119.99703 * 359.97438 * 15 14 11 17 17 C 1.37873 * 120.00080 * 180.02562 * 15 14 11 18 18 N 1.31517 * 120.00185 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00211 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47449 * 89.99883 * 19 17 15 21 21 H 1.48504 * 109.47286 * 210.00033 * 19 17 15 22 22 H 1.48500 * 109.47100 * 329.99571 * 19 17 15 23 23 H 1.09002 * 109.47152 * 90.02784 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.02885 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.02866 * 1 2 3 26 26 H 1.07997 * 125.43877 * 359.97438 * 3 2 1 27 27 H 1.08992 * 109.47638 * 359.97398 * 6 5 4 28 28 H 1.09008 * 109.47068 * 119.97369 * 6 5 4 29 29 H 1.09005 * 109.47179 * 239.96908 * 6 5 4 30 30 H 0.97000 * 119.99607 * 359.97438 * 10 8 7 31 31 H 1.09007 * 109.46887 * 299.99339 * 14 11 10 32 32 H 1.08996 * 109.47269 * 59.99498 * 14 11 10 33 33 H 0.96997 * 120.00207 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5922 0.6588 0.0006 5 6 3.6623 -0.6758 0.0015 6 6 4.9292 -1.4920 0.0029 7 6 2.3923 -1.1737 0.0072 8 6 1.9914 -2.5920 0.0156 9 8 1.8257 -3.1833 -1.0341 10 7 1.8084 -3.2336 1.1866 11 16 1.3574 -4.8270 1.1960 12 8 1.2378 -5.1491 2.5749 13 8 0.2308 -4.8774 0.3314 14 6 2.7657 -5.7004 0.4582 15 6 2.4717 -7.1776 0.4105 16 1 1.5317 -7.5535 0.7868 17 6 3.4029 -8.0494 -0.1126 18 7 4.5478 -7.5917 -0.5705 19 14 3.0388 -9.8805 -0.1711 20 1 2.3729 -10.2121 -1.4564 21 1 4.3091 -10.6417 -0.0610 22 1 2.1448 -10.2437 0.9577 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 0.8903 0.5134 25 1 -0.3633 -0.8898 0.5143 26 1 1.9895 2.1011 -0.0004 27 1 5.7912 -0.8249 0.0026 28 1 4.9560 -2.1198 0.8936 29 1 4.9567 -2.1217 -0.8864 30 1 1.9409 -2.7621 2.0239 31 1 2.9328 -5.3308 -0.5536 32 1 3.6573 -5.5262 1.0605 33 1 5.2028 -8.2050 -0.9388 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821582710.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:24 Heat of formation + Delta-G solvation = -134.951281 kcal Electronic energy + Delta-G solvation = -20890.134586 eV Core-core repulsion = 17429.527418 eV Total energy + Delta-G solvation = -3460.607168 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.61299 -40.98551 -38.15912 -37.11486 -35.72628 -35.43636 -34.84806 -33.46933 -31.13203 -29.24069 -27.51650 -25.70444 -25.07904 -21.83131 -20.91477 -20.78573 -19.40803 -19.02492 -18.40211 -17.55126 -17.41365 -17.16770 -16.56864 -16.26398 -16.02475 -15.74283 -14.75677 -14.53680 -14.36313 -14.18313 -14.15373 -13.90126 -13.74743 -13.59872 -13.50450 -13.29851 -13.26332 -13.15749 -12.75501 -12.57578 -12.36909 -12.13734 -11.86979 -11.67268 -11.12478 -10.80015 -10.56042 -9.48678 -8.43797 -6.63016 -0.82471 0.55182 0.82846 1.17562 1.37742 1.40016 1.51447 1.56539 1.90455 2.29677 2.69267 2.90023 3.10279 3.37346 3.49250 3.83128 3.92566 4.18589 4.33786 4.54693 4.59086 4.61924 4.71162 4.72470 4.73478 4.96455 5.00010 5.16153 5.27648 5.43667 5.58824 5.67366 6.01781 6.30362 6.45929 7.08777 8.69176 Molecular weight = 287.07amu Principal moments of inertia in cm(-1) A = 0.025261 B = 0.005007 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.173742 B = 5590.578379 C = 6214.573420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.169 4.169 3 C -0.017 4.017 4 O -0.168 6.168 5 C 0.063 3.937 6 C -0.095 4.095 7 C -0.272 4.272 8 C 0.620 3.380 9 O -0.523 6.523 10 N -1.035 6.035 11 S 2.593 3.407 12 O -0.975 6.975 13 O -0.984 6.984 14 C -0.416 4.416 15 C -0.570 4.570 16 H 0.068 0.932 17 C 0.028 3.972 18 N -0.905 5.905 19 Si 0.967 3.033 20 H -0.268 1.268 21 H -0.265 1.265 22 H -0.259 1.259 23 H 0.071 0.929 24 H 0.107 0.893 25 H 0.048 0.952 26 H 0.256 0.744 27 H 0.113 0.887 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.446 0.554 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.257 18.751 3.491 19.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.170 4.170 3 C -0.082 4.082 4 O -0.064 6.064 5 C 0.010 3.990 6 C -0.151 4.151 7 C -0.278 4.278 8 C 0.407 3.593 9 O -0.396 6.396 10 N -0.799 5.799 11 S 2.694 3.306 12 O -0.966 6.966 13 O -0.974 6.974 14 C -0.552 4.552 15 C -0.609 4.609 16 H 0.086 0.914 17 C -0.176 4.176 18 N -0.542 5.542 19 Si 0.789 3.211 20 H -0.193 1.193 21 H -0.190 1.190 22 H -0.183 1.183 23 H 0.090 0.910 24 H 0.125 0.875 25 H 0.067 0.933 26 H 0.272 0.728 27 H 0.132 0.868 28 H 0.120 0.880 29 H 0.103 0.897 30 H 0.284 0.716 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.312 18.202 2.996 18.450 hybrid contribution 0.280 -0.912 -0.078 0.957 sum -0.032 17.290 2.918 17.535 Atomic orbital electron populations 1.20301 0.87762 1.03694 1.02956 1.21594 0.97699 0.89931 1.07810 1.24440 0.78231 1.00695 1.04826 1.83780 1.30513 1.20868 1.71239 1.22802 0.95726 0.81353 0.99123 1.20710 0.91170 0.98304 1.04868 1.20878 0.95525 0.92060 1.19338 1.17657 0.72874 0.86857 0.81928 1.90989 1.47840 1.68593 1.32145 1.54988 1.76859 1.32351 1.15733 1.05698 0.77858 0.73073 0.74007 1.93504 1.87376 1.82343 1.33339 1.93487 1.50137 1.84962 1.68795 1.27629 1.12302 1.06898 1.08333 1.20709 1.04664 0.89656 1.45862 0.91423 1.25840 0.94146 1.04665 0.92939 1.70021 1.07654 1.37672 1.38811 0.85417 0.78781 0.77380 0.79550 1.19259 1.18964 1.18329 0.91045 0.87474 0.93314 0.72847 0.86837 0.88021 0.89673 0.71551 0.90195 0.88992 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.78 10.38 71.24 0.74 -1.04 16 2 C -0.17 -3.80 6.38 -18.49 -0.12 -3.92 16 3 C -0.02 -0.27 11.96 66.89 0.80 0.53 16 4 O -0.17 -3.34 10.52 4.46 0.05 -3.29 16 5 C 0.06 1.49 7.37 25.26 0.19 1.68 16 6 C -0.09 -1.88 10.17 71.24 0.72 -1.15 16 7 C -0.27 -7.79 6.07 -18.99 -0.12 -7.91 16 8 C 0.62 22.62 7.15 86.65 0.62 23.24 16 9 O -0.52 -23.95 15.21 12.29 0.19 -23.76 16 10 N -1.04 -35.19 5.60 -175.91 -0.99 -36.18 16 11 S 2.59 115.48 5.03 -56.49 -0.28 115.19 16 12 O -0.98 -44.57 18.08 -127.65 -2.31 -46.87 16 13 O -0.98 -50.62 17.04 -120.72 -2.06 -52.67 16 14 C -0.42 -21.23 5.64 71.24 0.40 -20.83 16 15 C -0.57 -32.50 9.13 25.60 0.23 -32.27 16 16 H 0.07 3.77 7.71 -2.91 -0.02 3.75 16 17 C 0.03 1.56 5.46 84.65 0.46 2.02 16 18 N -0.91 -51.79 13.29 21.45 0.28 -51.50 16 19 Si 0.97 42.97 29.54 68.60 2.03 45.00 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 22 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 23 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.26 1.37 8.06 -2.91 -0.02 1.35 16 27 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.45 11.17 8.77 -96.74 -0.85 10.32 16 31 H 0.08 4.34 7.19 -2.39 -0.02 4.32 16 32 H 0.09 4.45 8.14 -2.39 -0.02 4.43 16 33 H 0.28 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -79.50 312.37 1.15 -78.35 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.30 Total: 15.38 kcal Atomic # 6 Polarization: -43.58 SS G_CDS: 3.93 Total: -39.65 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -0.70 Total: -87.68 kcal Atomic # 8 Polarization: -122.47 SS G_CDS: -4.13 Total: -126.60 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 115.48 SS G_CDS: -0.28 Total: 115.19 kcal Total: -79.50 1.15 -78.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821582710.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.599 kcal (2) G-P(sol) polarization free energy of solvation -79.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds