Wall clock time and date at job start Tue Mar 31 2020 02:40:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 O 1.42905 * 109.47070 * 2 1
4 4 C 1.42904 * 113.99619 * 180.02562 * 3 2 1
5 5 C 1.53002 * 109.46585 * 180.02562 * 4 3 2
6 6 H 1.08995 * 109.50860 * 305.08059 * 5 4 3
7 7 C 1.53108 * 109.50253 * 184.99933 * 5 4 3
8 8 N 1.47010 * 109.25479 * 183.21262 * 7 5 4
9 9 C 1.46899 * 110.99961 * 182.38896 * 8 7 5
10 10 C 1.50707 * 109.46671 * 66.36879 * 9 8 7
11 11 O 1.21278 * 120.00112 * 6.27305 * 10 9 8
12 12 N 1.34773 * 119.99778 * 186.28197 * 10 9 8
13 13 C 1.46501 * 120.00122 * 180.02562 * 12 10 9
14 14 C 1.50694 * 109.47364 * 179.97438 * 13 12 10
15 15 H 1.07995 * 120.00427 * 359.97438 * 14 13 12
16 16 C 1.37887 * 119.99828 * 179.97438 * 14 13 12
17 17 N 1.31511 * 119.99752 * 0.02562 * 16 14 13
18 18 Si 1.86797 * 119.99623 * 180.02562 * 16 14 13
19 19 H 1.48500 * 109.47617 * 0.02562 * 18 16 14
20 20 H 1.48503 * 109.47180 * 120.00603 * 18 16 14
21 21 H 1.48507 * 109.46780 * 240.00037 * 18 16 14
22 22 C 1.47013 * 110.74956 * 58.62172 * 8 7 5
23 23 C 1.53102 * 109.25988 * 301.37621 * 22 8 7
24 24 O 1.43014 * 109.25323 * 56.85166 * 23 22 8
25 25 H 1.09001 * 109.47001 * 300.00005 * 1 2 3
26 26 H 1.08997 * 109.47026 * 59.99810 * 1 2 3
27 27 H 1.08996 * 109.47118 * 179.97438 * 1 2 3
28 28 H 1.09010 * 109.47090 * 240.00247 * 2 1 3
29 29 H 1.08997 * 109.47026 * 120.00190 * 2 1 3
30 30 H 1.09004 * 109.47250 * 299.99928 * 4 3 2
31 31 H 1.08996 * 109.47125 * 60.00165 * 4 3 2
32 32 H 1.08996 * 109.50673 * 303.15042 * 7 5 4
33 33 H 1.09003 * 109.50407 * 63.27992 * 7 5 4
34 34 H 1.08994 * 109.47285 * 186.36145 * 9 8 7
35 35 H 1.09003 * 109.47455 * 306.37089 * 9 8 7
36 36 H 0.97005 * 120.00311 * 359.97438 * 12 10 9
37 37 H 1.09006 * 109.46991 * 299.99836 * 13 12 10
38 38 H 1.09000 * 109.47291 * 59.99107 * 13 12 10
39 39 H 0.97006 * 119.99156 * 179.97438 * 17 16 14
40 40 H 1.09000 * 109.51081 * 61.31488 * 22 8 7
41 41 H 1.09007 * 109.50674 * 181.44449 * 22 8 7
42 42 H 1.08993 * 109.50775 * 176.78397 * 23 22 8
43 43 H 1.08999 * 109.50570 * 296.87640 * 23 22 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.4309 1.4601 -0.0006
5 6 3.8254 2.9384 0.0001
6 1 3.3483 3.4428 -0.8401
7 6 5.3462 3.0616 -0.1263
8 7 5.7259 4.4797 -0.0476
9 6 7.1749 4.6472 -0.2217
10 6 7.5606 4.2571 -1.6253
11 8 6.7013 3.9865 -2.4373
12 7 8.8604 4.2088 -1.9782
13 6 9.2354 3.8301 -3.3429
14 6 10.7362 3.8541 -3.4764
15 1 11.3495 4.1247 -2.6297
16 6 11.3265 3.5305 -4.6798
17 7 10.5796 3.2014 -5.7111
18 14 13.1869 3.5595 -4.8451
19 1 13.7929 3.9585 -3.5495
20 1 13.6715 2.2074 -5.2222
21 1 13.5753 4.5351 -5.8952
22 6 5.2761 5.0697 1.2216
23 6 3.7560 4.9263 1.3345
24 8 3.4032 3.5448 1.2246
25 1 -0.3633 0.5138 0.8900
26 1 -0.3633 0.5138 -0.8899
27 1 -0.3633 -1.0276 -0.0005
28 1 1.8934 -0.5138 -0.8901
29 1 1.8933 -0.5138 0.8899
30 1 3.8341 0.9764 0.8892
31 1 3.8333 0.9767 -0.8908
32 1 5.8246 2.5113 0.6838
33 1 5.6662 2.6517 -1.0843
34 1 7.4438 5.6889 -0.0473
35 1 7.7022 4.0117 0.4899
36 1 9.5477 4.4254 -1.3289
37 1 8.8673 2.8264 -3.5556
38 1 8.7967 4.5351 -4.0491
39 1 10.9950 2.9741 -6.5577
40 1 5.7534 4.5514 2.0533
41 1 5.5450 6.1258 1.2476
42 1 3.4249 5.3109 2.2991
43 1 3.2769 5.4898 0.5340
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000859771591.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:40:07
Heat of formation + Delta-G solvation = -125.653751 kcal
Electronic energy + Delta-G solvation = -22898.730488 eV
Core-core repulsion = 19365.158471 eV
Total energy + Delta-G solvation = -3533.572017 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 286.173 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-40.00237 -38.64166 -37.81376 -35.44598 -34.13048 -32.68569 -32.34720 -30.88062
-29.52881 -27.47945 -26.23021 -24.59628 -22.92869 -22.75632 -22.05042 -20.43168
-19.67991 -17.25386 -16.84476 -16.77773 -16.47960 -15.76375 -15.63801 -15.33746
-15.14195 -15.10014 -14.46839 -14.34553 -14.00749 -13.51459 -13.45708 -13.29914
-12.72921 -12.55646 -12.40396 -12.06690 -11.94587 -11.72831 -11.59344 -11.46700
-11.24885 -11.05526 -10.97328 -10.89112 -10.53763 -10.33947 -9.76863 -9.70303
-9.40514 -9.02111 -8.76119 -8.34337 -7.89237 -6.19268 -4.26159 3.21368
3.27982 3.30322 3.32336 3.34177 3.59900 3.74230 4.21946 4.38794
4.82387 4.85691 4.86791 4.90940 5.02895 5.07373 5.12204 5.16920
5.18400 5.24169 5.32426 5.38352 5.41510 5.44784 5.50879 5.57087
5.67131 5.70253 5.72506 5.90373 5.92908 5.97407 6.80360 6.90469
7.04932 7.17683 7.29366 7.41892 7.49370 7.64975 7.94565 8.60512
8.76478 9.08937 9.40705 10.90950
Molecular weight = 286.17amu
Principal moments of inertia in cm(-1)
A = 0.021371 B = 0.003010 C = 0.002709
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1309.889645 B = 9300.857465 C =10331.704086
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.056 3.944
3 O -0.381 6.381
4 C 0.073 3.927
5 C 0.100 3.900
6 H 0.079 0.921
7 C 0.025 3.975
8 N -0.516 5.516
9 C 0.036 3.964
10 C 0.497 3.503
11 O -0.538 6.538
12 N -0.715 5.715
13 C 0.251 3.749
14 C -0.543 4.543
15 H 0.063 0.937
16 C 0.063 3.937
17 N -0.885 5.885
18 Si 0.904 3.096
19 H -0.272 1.272
20 H -0.282 1.282
21 H -0.282 1.282
22 C 0.016 3.984
23 C 0.066 3.934
24 O -0.377 6.377
25 H 0.062 0.938
26 H 0.063 0.937
27 H 0.069 0.931
28 H 0.048 0.952
29 H 0.047 0.953
30 H 0.055 0.945
31 H 0.069 0.931
32 H 0.038 0.962
33 H 0.107 0.893
34 H 0.102 0.898
35 H 0.058 0.942
36 H 0.390 0.610
37 H 0.026 0.974
38 H 0.027 0.973
39 H 0.265 0.735
40 H 0.042 0.958
41 H 0.087 0.913
42 H 0.097 0.903
43 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.590 -1.569 15.889 20.967
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.021 4.021
3 O -0.300 6.300
4 C -0.004 4.004
5 C 0.042 3.958
6 H 0.097 0.903
7 C -0.103 4.103
8 N -0.241 5.241
9 C -0.095 4.095
10 C 0.281 3.719
11 O -0.416 6.416
12 N -0.364 5.364
13 C 0.130 3.870
14 C -0.581 4.581
15 H 0.081 0.919
16 C -0.141 4.141
17 N -0.522 5.522
18 Si 0.731 3.269
19 H -0.197 1.197
20 H -0.208 1.208
21 H -0.208 1.208
22 C -0.112 4.112
23 C -0.011 4.011
24 O -0.296 6.296
25 H 0.081 0.919
26 H 0.082 0.918
27 H 0.088 0.912
28 H 0.066 0.934
29 H 0.065 0.935
30 H 0.074 0.926
31 H 0.087 0.913
32 H 0.056 0.944
33 H 0.125 0.875
34 H 0.120 0.880
35 H 0.076 0.924
36 H 0.222 0.778
37 H 0.044 0.956
38 H 0.045 0.955
39 H 0.075 0.925
40 H 0.060 0.940
41 H 0.105 0.895
42 H 0.115 0.885
43 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -14.646 -1.522 14.834 20.902
hybrid contribution 2.254 -0.351 0.578 2.354
sum -12.392 -1.873 15.413 19.865
Atomic orbital electron populations
1.21728 0.93796 1.02052 1.03175 1.22461 0.95617 0.83984 1.00029
1.87932 1.20539 1.26102 1.95419 1.22431 0.81891 0.95052 1.01070
1.22065 0.93081 0.92594 0.88075 0.90323 1.22792 0.95208 0.88848
1.03465 1.61773 1.13308 1.15935 1.33040 1.22052 0.88421 1.03019
0.96051 1.20275 0.83514 0.78932 0.89168 1.90645 1.49317 1.49197
1.52405 1.46472 1.05761 1.67916 1.16243 1.19091 0.95120 0.96077
0.76677 1.21262 0.90963 1.48415 0.97508 0.91873 1.24961 0.98890
0.94738 0.95477 1.69986 1.35407 1.44894 1.01940 0.86363 0.84524
0.77802 0.78223 1.19654 1.20799 1.20766 1.22857 0.97166 1.00784
0.90387 1.22616 0.93043 0.83202 1.02256 1.88000 1.79377 1.23774
1.38445 0.91874 0.91818 0.91239 0.93356 0.93522 0.92650 0.91337
0.94367 0.87504 0.87971 0.92380 0.77808 0.95616 0.95516 0.92483
0.94007 0.89461 0.88486 0.92115
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.23 10.28 37.16 0.38 -0.85 16
2 C 0.06 0.55 6.66 37.16 0.25 0.79 16
3 O -0.38 -4.99 10.31 -39.73 -0.41 -5.40 16
4 C 0.07 0.90 5.60 37.16 0.21 1.11 16
5 C 0.10 1.38 3.09 -26.67 -0.08 1.30 16
6 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16
7 C 0.02 0.36 4.58 -3.71 -0.02 0.34 16
8 N -0.52 -7.40 4.42 -235.74 -1.04 -8.45 16
9 C 0.04 0.50 5.45 -4.97 -0.03 0.48 16
10 C 0.50 9.68 7.40 -10.98 -0.08 9.60 16
11 O -0.54 -12.64 14.68 5.56 0.08 -12.55 16
12 N -0.71 -14.68 5.55 -61.47 -0.34 -15.02 16
13 C 0.25 6.57 5.43 -5.20 -0.03 6.54 16
14 C -0.54 -14.58 9.28 -34.44 -0.32 -14.90 16
15 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16
16 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16
17 N -0.88 -25.92 13.29 55.43 0.74 -25.18 16
18 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16
19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16
20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
22 C 0.02 0.18 5.64 -3.71 -0.02 0.16 16
23 C 0.07 0.73 7.01 37.21 0.26 0.99 16
24 O -0.38 -5.18 10.44 -39.73 -0.41 -5.60 16
25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
28 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16
29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16
32 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16
33 H 0.11 1.81 6.10 -51.93 -0.32 1.49 16
34 H 0.10 1.22 8.04 -51.93 -0.42 0.80 16
35 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16
36 H 0.39 6.79 8.32 -40.82 -0.34 6.45 16
37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16
38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16
39 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16
40 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16
41 H 0.09 0.81 8.09 -51.92 -0.42 0.39 16
42 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16
43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
LS Contribution 353.98 15.07 5.33 5.33
Total: -1.00 -33.07 353.98 -8.02 -41.09
By element:
Atomic # 1 Polarization: 10.30 SS G_CDS: -7.37 Total: 2.94 kcal
Atomic # 6 Polarization: 6.77 SS G_CDS: 0.42 Total: 7.20 kcal
Atomic # 7 Polarization: -48.01 SS G_CDS: -0.65 Total: -48.66 kcal
Atomic # 8 Polarization: -22.81 SS G_CDS: -0.74 Total: -23.56 kcal
Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal
Total LS contribution 5.33 Total: 5.33 kcal
Total: -33.07 -8.02 -41.09 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000859771591.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -84.566 kcal
(2) G-P(sol) polarization free energy of solvation -33.069 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.635 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal
(6) G-S(sol) free energy of system = (1) + (5) -125.654 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds