Wall clock time and date at job start Tue Mar 31 2020 02:40:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 O 1.42905 * 109.47070 * 2 1
4 4 C 1.42904 * 113.99619 * 180.02562 * 3 2 1
5 5 C 1.53002 * 109.46585 * 180.02562 * 4 3 2
6 6 H 1.08995 * 109.50860 * 305.08059 * 5 4 3
7 7 C 1.53108 * 109.50253 * 184.99933 * 5 4 3
8 8 N 1.47010 * 109.25479 * 183.21262 * 7 5 4
9 9 C 1.46899 * 110.99961 * 182.38896 * 8 7 5
10 10 C 1.50707 * 109.46671 * 66.36879 * 9 8 7
11 11 O 1.21278 * 120.00112 * 6.27305 * 10 9 8
12 12 N 1.34773 * 119.99778 * 186.28197 * 10 9 8
13 13 C 1.46501 * 120.00122 * 180.02562 * 12 10 9
14 14 C 1.50694 * 109.47364 * 179.97438 * 13 12 10
15 15 H 1.07995 * 120.00427 * 359.97438 * 14 13 12
16 16 C 1.37887 * 119.99828 * 179.97438 * 14 13 12
17 17 N 1.31511 * 119.99752 * 0.02562 * 16 14 13
18 18 Si 1.86797 * 119.99623 * 180.02562 * 16 14 13
19 19 H 1.48500 * 109.47617 * 0.02562 * 18 16 14
20 20 H 1.48503 * 109.47180 * 120.00603 * 18 16 14
21 21 H 1.48507 * 109.46780 * 240.00037 * 18 16 14
22 22 C 1.47013 * 110.74956 * 58.62172 * 8 7 5
23 23 C 1.53102 * 109.25988 * 301.37621 * 22 8 7
24 24 O 1.43014 * 109.25323 * 56.85166 * 23 22 8
25 25 H 1.09001 * 109.47001 * 300.00005 * 1 2 3
26 26 H 1.08997 * 109.47026 * 59.99810 * 1 2 3
27 27 H 1.08996 * 109.47118 * 179.97438 * 1 2 3
28 28 H 1.09010 * 109.47090 * 240.00247 * 2 1 3
29 29 H 1.08997 * 109.47026 * 120.00190 * 2 1 3
30 30 H 1.09004 * 109.47250 * 299.99928 * 4 3 2
31 31 H 1.08996 * 109.47125 * 60.00165 * 4 3 2
32 32 H 1.08996 * 109.50673 * 303.15042 * 7 5 4
33 33 H 1.09003 * 109.50407 * 63.27992 * 7 5 4
34 34 H 1.08994 * 109.47285 * 186.36145 * 9 8 7
35 35 H 1.09003 * 109.47455 * 306.37089 * 9 8 7
36 36 H 0.97005 * 120.00311 * 359.97438 * 12 10 9
37 37 H 1.09006 * 109.46991 * 299.99836 * 13 12 10
38 38 H 1.09000 * 109.47291 * 59.99107 * 13 12 10
39 39 H 0.97006 * 119.99156 * 179.97438 * 17 16 14
40 40 H 1.09000 * 109.51081 * 61.31488 * 22 8 7
41 41 H 1.09007 * 109.50674 * 181.44449 * 22 8 7
42 42 H 1.08993 * 109.50775 * 176.78397 * 23 22 8
43 43 H 1.08999 * 109.50570 * 296.87640 * 23 22 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.4309 1.4601 -0.0006
5 6 3.8254 2.9384 0.0001
6 1 3.3483 3.4428 -0.8401
7 6 5.3462 3.0616 -0.1263
8 7 5.7259 4.4797 -0.0476
9 6 7.1749 4.6472 -0.2217
10 6 7.5606 4.2571 -1.6253
11 8 6.7013 3.9865 -2.4373
12 7 8.8604 4.2088 -1.9782
13 6 9.2354 3.8301 -3.3429
14 6 10.7362 3.8541 -3.4764
15 1 11.3495 4.1247 -2.6297
16 6 11.3265 3.5305 -4.6798
17 7 10.5796 3.2014 -5.7111
18 14 13.1869 3.5595 -4.8451
19 1 13.7929 3.9585 -3.5495
20 1 13.6715 2.2074 -5.2222
21 1 13.5753 4.5351 -5.8952
22 6 5.2761 5.0697 1.2216
23 6 3.7560 4.9263 1.3345
24 8 3.4032 3.5448 1.2246
25 1 -0.3633 0.5138 0.8900
26 1 -0.3633 0.5138 -0.8899
27 1 -0.3633 -1.0276 -0.0005
28 1 1.8934 -0.5138 -0.8901
29 1 1.8933 -0.5138 0.8899
30 1 3.8341 0.9764 0.8892
31 1 3.8333 0.9767 -0.8908
32 1 5.8246 2.5113 0.6838
33 1 5.6662 2.6517 -1.0843
34 1 7.4438 5.6889 -0.0473
35 1 7.7022 4.0117 0.4899
36 1 9.5477 4.4254 -1.3289
37 1 8.8673 2.8264 -3.5556
38 1 8.7967 4.5351 -4.0491
39 1 10.9950 2.9741 -6.5577
40 1 5.7534 4.5514 2.0533
41 1 5.5450 6.1258 1.2476
42 1 3.4249 5.3109 2.2991
43 1 3.2769 5.4898 0.5340
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000859771591.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:40:06
Heat of formation + Delta-G solvation = -152.127655 kcal
Electronic energy + Delta-G solvation = -22899.878483 eV
Core-core repulsion = 19365.158471 eV
Total energy + Delta-G solvation = -3534.720011 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 286.173 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.17524 -40.07180 -38.78032 -36.64663 -35.97888 -34.34692 -33.58784 -31.69718
-30.83294 -29.13372 -27.46761 -25.83349 -24.37562 -23.68218 -23.33238 -21.48605
-21.31367 -18.96694 -17.93004 -17.72122 -17.64719 -17.41555 -16.84330 -16.64178
-16.45234 -16.13570 -16.01309 -15.64594 -15.32305 -14.75744 -14.56843 -14.22956
-14.15825 -14.05302 -13.80758 -13.41711 -13.03339 -12.96579 -12.87620 -12.75302
-12.44785 -12.32797 -12.27822 -12.21487 -11.96381 -11.54251 -11.45684 -10.90903
-10.81602 -10.61973 -10.51262 -9.80917 -9.39540 -8.29658 -6.46020 1.43034
1.43941 1.57383 1.78839 2.20031 2.38456 2.56129 2.70562 3.05470
3.06449 3.82405 3.88695 3.94010 3.97700 4.04173 4.14517 4.24334
4.25616 4.31457 4.38867 4.42187 4.45847 4.48474 4.54867 4.69255
4.76646 4.82424 4.90686 4.98295 5.02720 5.11622 5.24703 5.25633
5.49221 5.67106 5.77882 5.85476 5.93423 6.12601 6.23824 6.65745
6.94969 7.23715 7.53095 8.82732
Molecular weight = 286.17amu
Principal moments of inertia in cm(-1)
A = 0.021371 B = 0.003010 C = 0.002709
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1309.889645 B = 9300.857465 C =10331.704086
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.047 3.953
3 O -0.404 6.404
4 C 0.074 3.926
5 C 0.105 3.895
6 H 0.053 0.947
7 C 0.032 3.968
8 N -0.541 5.541
9 C 0.051 3.949
10 C 0.493 3.507
11 O -0.585 6.585
12 N -0.709 5.709
13 C 0.268 3.732
14 C -0.554 4.554
15 H 0.085 0.915
16 C 0.002 3.998
17 N -0.931 5.931
18 Si 0.984 3.016
19 H -0.252 1.252
20 H -0.279 1.279
21 H -0.280 1.280
22 C 0.020 3.980
23 C 0.059 3.941
24 O -0.388 6.388
25 H 0.059 0.941
26 H 0.055 0.945
27 H 0.093 0.907
28 H 0.054 0.946
29 H 0.059 0.941
30 H 0.068 0.932
31 H 0.069 0.931
32 H 0.052 0.948
33 H 0.073 0.927
34 H 0.134 0.866
35 H 0.088 0.912
36 H 0.408 0.592
37 H -0.014 1.014
38 H -0.015 1.015
39 H 0.268 0.732
40 H 0.056 0.944
41 H 0.111 0.889
42 H 0.128 0.872
43 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.306 -1.056 18.624 22.348
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.029 4.029
3 O -0.324 6.324
4 C -0.003 4.003
5 C 0.047 3.953
6 H 0.071 0.929
7 C -0.097 4.097
8 N -0.266 5.266
9 C -0.080 4.080
10 C 0.280 3.720
11 O -0.465 6.465
12 N -0.360 5.360
13 C 0.145 3.855
14 C -0.592 4.592
15 H 0.103 0.897
16 C -0.197 4.197
17 N -0.570 5.570
18 Si 0.808 3.192
19 H -0.175 1.175
20 H -0.205 1.205
21 H -0.205 1.205
22 C -0.107 4.107
23 C -0.017 4.017
24 O -0.307 6.307
25 H 0.078 0.922
26 H 0.074 0.926
27 H 0.111 0.889
28 H 0.072 0.928
29 H 0.077 0.923
30 H 0.086 0.914
31 H 0.087 0.913
32 H 0.070 0.930
33 H 0.091 0.909
34 H 0.152 0.848
35 H 0.106 0.894
36 H 0.244 0.756
37 H 0.004 0.996
38 H 0.003 0.997
39 H 0.077 0.923
40 H 0.074 0.926
41 H 0.129 0.871
42 H 0.146 0.854
43 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -13.365 -0.990 17.634 22.149
hybrid contribution 1.738 -0.500 -0.267 1.828
sum -11.627 -1.490 17.367 20.953
Atomic orbital electron populations
1.21752 0.92662 1.03447 1.02629 1.22713 0.96616 0.82720 1.00898
1.87899 1.20739 1.28210 1.95584 1.22416 0.81940 0.94245 1.01675
1.21922 0.92545 0.93321 0.87520 0.92921 1.22617 0.95576 0.89411
1.02055 1.61713 1.13477 1.15838 1.35616 1.21987 0.88804 1.05265
0.91934 1.21344 0.82271 0.77185 0.91231 1.90633 1.50484 1.50863
1.54525 1.46193 1.07165 1.68208 1.14462 1.18499 0.95123 0.92820
0.79012 1.21657 0.91147 1.48025 0.98351 0.89737 1.26077 1.04662
0.93983 0.95003 1.70149 1.38054 1.46063 1.02749 0.85115 0.77448
0.77755 0.78916 1.17548 1.20517 1.20533 1.22944 0.96796 1.02014
0.88936 1.22874 0.93401 0.81857 1.03592 1.87986 1.79626 1.25216
1.37885 0.92183 0.92569 0.88871 0.92806 0.92283 0.91391 0.91284
0.92979 0.90853 0.84782 0.89422 0.75596 0.99574 0.99685 0.92289
0.92562 0.87093 0.85397 0.93082
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.31 10.28 71.98 0.74 -1.57 16
2 C 0.05 0.89 6.66 71.98 0.48 1.37 16
3 O -0.40 -10.69 10.31 -144.68 -1.49 -12.18 16
4 C 0.07 1.85 5.60 71.98 0.40 2.26 16
5 C 0.11 2.95 3.09 30.63 0.09 3.05 16
6 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16
7 C 0.03 0.91 4.58 86.32 0.40 1.31 16
8 N -0.54 -14.71 4.42 -899.75 -3.98 -18.68 16
9 C 0.05 1.30 5.45 85.56 0.47 1.77 16
10 C 0.49 19.23 7.40 87.66 0.65 19.88 16
11 O -0.58 -28.73 14.68 -3.02 -0.04 -28.77 16
12 N -0.71 -29.19 5.55 -466.79 -2.59 -31.78 16
13 C 0.27 14.63 5.43 85.63 0.46 15.09 16
14 C -0.55 -29.82 9.28 25.60 0.24 -29.58 16
15 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16
16 C 0.00 0.12 5.46 84.66 0.46 0.58 16
17 N -0.93 -56.14 13.29 21.45 0.28 -55.86 16
18 Si 0.98 41.99 29.54 68.60 2.03 44.02 16
19 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16
20 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16
21 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16
22 C 0.02 0.38 5.64 86.32 0.49 0.87 16
23 C 0.06 1.19 7.01 72.02 0.50 1.69 16
24 O -0.39 -10.26 10.44 -144.68 -1.51 -11.77 16
25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16
26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16
27 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16
28 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16
29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16
30 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16
31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16
32 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16
33 H 0.07 2.61 6.10 -2.39 -0.01 2.59 16
34 H 0.13 2.66 8.04 -2.39 -0.02 2.64 16
35 H 0.09 1.81 8.12 -2.39 -0.02 1.79 16
36 H 0.41 13.57 8.32 -92.70 -0.77 12.80 16
37 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16
38 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16
39 H 0.27 15.06 8.31 -92.70 -0.77 14.29 16
40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16
41 H 0.11 1.59 8.09 -2.38 -0.02 1.57 16
42 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16
43 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16
Total: -1.00 -75.30 353.98 -1.71 -77.00
By element:
Atomic # 1 Polarization: 21.08 SS G_CDS: 0.21 Total: 21.30 kcal
Atomic # 6 Polarization: 11.33 SS G_CDS: 5.38 Total: 16.72 kcal
Atomic # 7 Polarization: -100.04 SS G_CDS: -6.28 Total: -106.32 kcal
Atomic # 8 Polarization: -49.67 SS G_CDS: -3.05 Total: -52.71 kcal
Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal
Total: -75.30 -1.71 -77.00 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000859771591.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -75.127 kcal
(2) G-P(sol) polarization free energy of solvation -75.295 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.422 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.706 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.001 kcal
(6) G-S(sol) free energy of system = (1) + (5) -152.128 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds