Wall clock time and date at job start Tue Mar 31 2020 02:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99962 * 2 1 4 4 H 1.09001 * 109.52282 * 330.12903 * 3 2 1 5 5 C 1.53097 * 109.52044 * 90.31513 * 3 2 1 6 6 O 1.42905 * 109.41264 * 177.51361 * 5 3 2 7 7 C 1.42905 * 114.09994 * 298.83969 * 6 5 3 8 8 C 1.53093 * 109.41280 * 61.16207 * 7 6 5 9 9 C 1.53179 * 109.52331 * 210.00013 * 3 2 1 10 10 H 1.09002 * 109.54214 * 63.16378 * 9 3 2 11 11 N 1.46494 * 109.54346 * 302.98097 * 9 3 2 12 12 C 1.46503 * 120.00363 * 355.32223 * 11 9 3 13 13 C 1.34782 * 120.00205 * 175.32204 * 11 9 3 14 14 O 1.21592 * 119.99578 * 0.02562 * 13 11 9 15 15 N 1.34769 * 120.00477 * 180.02562 * 13 11 9 16 16 C 1.46495 * 120.00297 * 179.97438 * 15 13 11 17 17 C 1.53000 * 109.47328 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.47229 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99571 * 0.02562 * 18 17 16 20 20 C 1.37874 * 119.99727 * 179.72209 * 18 17 16 21 21 N 1.31508 * 120.00385 * 0.27891 * 20 18 17 22 22 Si 1.86807 * 119.99654 * 180.27685 * 20 18 17 23 23 H 1.48494 * 109.47061 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47056 * 120.00571 * 22 20 18 25 25 H 1.48500 * 109.46897 * 240.00173 * 22 20 18 26 26 H 1.08995 * 109.46855 * 59.99545 * 1 2 3 27 27 H 1.08999 * 109.46939 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46773 * 299.99798 * 1 2 3 29 29 H 1.08996 * 109.47849 * 297.49750 * 5 3 2 30 30 H 1.09003 * 109.47676 * 57.53499 * 5 3 2 31 31 H 1.09004 * 109.47855 * 181.14028 * 7 6 5 32 32 H 1.08991 * 109.48089 * 301.18079 * 7 6 5 33 33 H 1.08994 * 109.52083 * 182.48662 * 8 7 6 34 34 H 1.09002 * 109.51986 * 62.29248 * 8 7 6 35 35 H 1.08997 * 109.46837 * 264.58088 * 12 11 9 36 36 H 1.09001 * 109.46469 * 24.58024 * 12 11 9 37 37 H 1.09003 * 109.47293 * 144.57884 * 12 11 9 38 38 H 0.97004 * 119.99806 * 359.97438 * 15 13 11 39 39 H 1.09001 * 109.47150 * 59.99497 * 16 15 13 40 40 H 1.09003 * 109.47263 * 299.99683 * 16 15 13 41 41 H 1.09001 * 109.47091 * 59.99859 * 17 16 15 42 42 H 1.09000 * 109.47454 * 299.99967 * 17 16 15 43 43 H 0.97005 * 119.99955 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3446 2.0006 -0.5117 5 6 2.2256 1.7696 1.4430 6 8 2.8597 3.0502 1.4404 7 6 4.1472 3.0625 0.8204 8 6 4.0091 2.6504 -0.6475 9 6 3.3607 1.2646 -0.7219 10 1 3.2083 0.9874 -1.7650 11 7 4.2323 0.2805 -0.0755 12 6 3.7884 -0.4039 1.1415 13 6 5.4427 0.0046 -0.6003 14 8 5.8113 0.5729 -1.6100 15 7 6.2444 -0.9012 -0.0059 16 6 7.5597 -1.2014 -0.5767 17 6 8.2609 -2.2542 0.2840 18 6 9.6138 -2.5635 -0.3035 19 1 9.9409 -2.0593 -1.2008 20 6 10.4364 -3.4856 0.3081 21 7 10.0383 -4.0993 1.4009 22 14 12.1166 -3.8634 -0.4159 23 1 12.3244 -3.0453 -1.6376 24 1 13.1690 -3.5402 0.5807 25 1 12.1921 -5.3046 -0.7659 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.2629 1.8416 1.9490 30 1 2.8582 1.0517 1.9651 31 1 4.5688 4.0661 0.8781 32 1 4.8049 2.3616 1.3343 33 1 4.9952 2.6165 -1.1106 34 1 3.3841 3.3735 -1.1716 35 1 4.1777 0.1191 2.0149 36 1 2.6990 -0.4107 1.1775 37 1 4.1582 -1.4293 1.1371 38 1 5.9504 -1.3543 0.7998 39 1 8.1614 -0.2928 -0.6007 40 1 7.4375 -1.5831 -1.5903 41 1 7.6594 -3.1629 0.3084 42 1 8.3833 -1.8722 1.2975 43 1 10.6170 -4.7483 1.8309 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883606482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:32 Heat of formation + Delta-G solvation = -117.503255 kcal Electronic energy + Delta-G solvation = -24048.750803 eV Core-core repulsion = 20515.532218 eV Total energy + Delta-G solvation = -3533.218585 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.10072 -40.24300 -38.36937 -36.79381 -36.27643 -34.90256 -33.23224 -31.68037 -30.88679 -28.40401 -27.51405 -26.84510 -25.16990 -24.15608 -23.12933 -21.96791 -20.67173 -18.94981 -18.47217 -18.23061 -17.65318 -17.27034 -16.92654 -16.78899 -16.47122 -16.15789 -15.92846 -15.30412 -15.24568 -14.85945 -14.51126 -14.28281 -14.21645 -14.13295 -13.43298 -13.30122 -13.22407 -12.96399 -12.94779 -12.88320 -12.50887 -12.32975 -12.22195 -11.95120 -11.68155 -11.56680 -11.35456 -11.07473 -10.80542 -10.60908 -10.19712 -10.14299 -9.49856 -8.24000 -6.34394 1.41413 1.42007 1.55100 1.63673 2.13324 2.40124 2.44234 2.97038 3.05667 3.10780 3.51825 3.69710 3.87421 3.94719 4.03411 4.19600 4.36601 4.42751 4.44456 4.50028 4.51861 4.57022 4.69940 4.72743 4.75987 4.78301 4.85312 4.89784 4.92724 5.03782 5.10012 5.29994 5.50221 5.54208 5.58180 5.78154 5.88497 5.99237 6.16863 6.26086 6.78640 6.97959 7.34979 7.56181 8.88229 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.028889 B = 0.003347 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.978561 B = 8362.881327 C = 8651.913924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.386 6.386 3 C 0.061 3.939 4 H 0.103 0.897 5 C 0.012 3.988 6 O -0.383 6.383 7 C 0.066 3.934 8 C -0.163 4.163 9 C 0.164 3.836 10 H 0.067 0.933 11 N -0.617 5.617 12 C 0.049 3.951 13 C 0.698 3.302 14 O -0.632 6.632 15 N -0.734 5.734 16 C 0.161 3.839 17 C 0.025 3.975 18 C -0.545 4.545 19 H 0.059 0.941 20 C 0.007 3.993 21 N -0.926 5.926 22 Si 0.966 3.034 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 H 0.051 0.949 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.118 0.882 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.061 0.939 36 H 0.131 0.869 37 H 0.061 0.939 38 H 0.403 0.597 39 H 0.044 0.956 40 H 0.041 0.959 41 H 0.007 0.993 42 H 0.008 0.992 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.897 11.694 1.690 24.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.306 6.306 3 C 0.003 3.997 4 H 0.120 0.880 5 C -0.064 4.064 6 O -0.301 6.301 7 C -0.011 4.011 8 C -0.202 4.202 9 C 0.060 3.940 10 H 0.085 0.915 11 N -0.354 5.354 12 C -0.092 4.092 13 C 0.399 3.601 14 O -0.514 6.514 15 N -0.390 5.390 16 C 0.037 3.963 17 C -0.013 4.013 18 C -0.584 4.584 19 H 0.077 0.923 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.791 3.209 23 H -0.190 1.190 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.069 0.931 27 H 0.114 0.886 28 H 0.079 0.921 29 H 0.135 0.865 30 H 0.101 0.899 31 H 0.127 0.873 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.148 0.852 37 H 0.080 0.920 38 H 0.240 0.760 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.025 0.975 42 H 0.026 0.974 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.570 11.964 1.177 24.694 hybrid contribution 0.925 -0.771 -0.128 1.211 sum -20.645 11.193 1.050 23.508 Atomic orbital electron populations 1.23102 0.79218 1.04106 1.01385 1.87949 1.21707 1.26425 1.94488 1.22891 0.93097 0.86305 0.97418 0.87951 1.23904 1.00440 0.86361 0.95699 1.87925 1.32252 1.30788 1.79172 1.22533 0.84640 1.02589 0.91313 1.22558 1.03032 0.95964 0.98664 1.21113 0.88133 0.87986 0.96734 0.91499 1.46943 1.15048 1.44086 1.29306 1.22771 1.04999 0.96314 0.85119 1.16088 0.81016 0.80187 0.82782 1.90826 1.75876 1.56808 1.27886 1.45390 1.18309 1.43845 1.31464 1.21063 0.80934 0.97811 0.96484 1.19119 0.94595 0.92892 0.94662 1.21479 1.01891 1.23663 1.11358 0.92308 1.25871 1.02564 0.95501 0.95202 1.70066 1.38698 1.27745 1.20085 0.85380 0.78835 0.78119 0.78609 1.18985 1.20159 1.20182 0.93054 0.88552 0.92066 0.86458 0.89912 0.87301 0.94287 0.90997 0.88296 0.92041 0.85153 0.92020 0.76007 0.93783 0.94013 0.97494 0.97370 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.82 113.37 1.23 1.40 16 2 O -0.39 -6.42 7.60 -148.98 -1.13 -7.55 16 3 C 0.06 1.02 2.39 30.69 0.07 1.10 16 4 H 0.10 1.37 7.79 -2.39 -0.02 1.35 16 5 C 0.01 0.19 5.91 72.01 0.43 0.62 16 6 O -0.38 -7.59 10.77 -148.98 -1.60 -9.19 16 7 C 0.07 1.40 6.68 72.01 0.48 1.88 16 8 C -0.16 -3.77 5.54 30.69 0.17 -3.60 16 9 C 0.16 3.95 2.57 45.11 0.12 4.07 16 10 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 11 N -0.62 -17.18 2.37 -839.92 -1.99 -19.18 16 12 C 0.05 1.06 7.72 127.77 0.99 2.04 16 13 C 0.70 25.90 8.00 179.06 1.43 27.33 16 14 O -0.63 -27.86 14.81 -4.01 -0.06 -27.92 16 15 N -0.73 -27.85 5.42 -478.54 -2.59 -30.45 16 16 C 0.16 7.31 5.61 86.38 0.48 7.80 16 17 C 0.02 1.29 5.09 29.85 0.15 1.44 16 18 C -0.55 -31.02 9.11 25.60 0.23 -30.79 16 19 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 20 C 0.01 0.42 5.46 84.65 0.46 0.88 16 21 N -0.93 -54.74 13.29 21.45 0.28 -54.45 16 22 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 26 H 0.05 0.44 8.09 -2.39 -0.02 0.42 16 27 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.39 7.96 -2.38 -0.02 0.37 16 29 H 0.12 1.28 7.96 -2.39 -0.02 1.26 16 30 H 0.08 1.36 3.76 -2.39 -0.01 1.35 16 31 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.04 0.95 7.75 -2.39 -0.02 0.93 16 33 H 0.07 2.14 6.50 -2.39 -0.02 2.12 16 34 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.06 1.20 6.99 -2.39 -0.02 1.18 16 36 H 0.13 2.37 3.43 -5.76 -0.02 2.35 16 37 H 0.06 1.38 6.66 -2.39 -0.02 1.36 16 38 H 0.40 13.52 6.32 -92.71 -0.59 12.93 16 39 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.27 14.69 8.31 -92.70 -0.77 13.92 16 Total: -1.00 -70.20 334.39 1.59 -68.61 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.41 Total: 19.88 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 6.24 Total: 14.16 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -4.30 Total: -104.08 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -2.79 Total: -44.67 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -70.20 1.59 -68.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883606482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.891 kcal (2) G-P(sol) polarization free energy of solvation -70.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds