Wall clock time and date at job start Tue Mar 31 2020 02:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47113 * 175.00262 * 4 3 2 6 6 N 1.46506 * 109.46967 * 294.99906 * 4 3 2 7 7 C 1.34778 * 119.99759 * 275.00039 * 6 4 3 8 8 O 1.21581 * 120.00595 * 0.02562 * 7 6 4 9 9 N 1.34781 * 119.99388 * 180.02562 * 7 6 4 10 10 C 1.46501 * 119.99607 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47031 * 179.97438 * 10 9 7 12 12 H 1.08004 * 120.00318 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00399 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99593 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00414 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46987 * 90.00021 * 15 13 11 17 17 H 1.48504 * 109.47173 * 210.00394 * 15 13 11 18 18 H 1.48502 * 109.47043 * 330.00528 * 15 13 11 19 19 C 1.52996 * 109.47316 * 55.00160 * 4 3 2 20 20 H 1.08996 * 109.52118 * 300.12604 * 19 4 3 21 21 C 1.53176 * 109.52000 * 180.02562 * 19 4 3 22 22 C 1.53181 * 109.03356 * 183.11144 * 21 19 4 23 23 C 1.53099 * 109.16350 * 56.98160 * 22 21 19 24 24 O 1.42899 * 109.41268 * 302.39364 * 23 22 21 25 25 C 1.42898 * 114.10262 * 61.15375 * 24 23 22 26 26 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47054 * 299.99711 * 1 2 3 28 28 H 1.09000 * 109.47187 * 59.99767 * 1 2 3 29 29 H 1.08997 * 109.47442 * 300.00036 * 3 2 1 30 30 H 1.08997 * 109.47171 * 60.00232 * 3 2 1 31 31 H 0.96994 * 119.99619 * 95.00401 * 6 4 3 32 32 H 0.96994 * 120.00559 * 359.97438 * 9 7 6 33 33 H 1.09004 * 109.47100 * 299.99805 * 10 9 7 34 34 H 1.08995 * 109.47288 * 59.99815 * 10 9 7 35 35 H 0.96993 * 119.99770 * 179.97438 * 14 13 11 36 36 H 1.09002 * 109.54898 * 302.97490 * 21 19 4 37 37 H 1.09004 * 109.54950 * 63.24939 * 21 19 4 38 38 H 1.09000 * 109.52451 * 176.88276 * 22 21 19 39 39 H 1.08995 * 109.52759 * 297.01204 * 22 21 19 40 40 H 1.09005 * 109.47969 * 62.37166 * 23 22 21 41 41 H 1.08992 * 109.48096 * 182.39781 * 23 22 21 42 42 H 1.09003 * 109.48376 * 178.85989 * 25 24 23 43 43 H 1.09006 * 109.47694 * 58.82590 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1766 -0.0902 6 7 3.9766 0.5640 1.2509 7 6 4.1662 1.3222 2.3489 8 8 3.9707 2.5213 2.3010 9 7 4.5726 0.7512 3.5002 10 6 4.7782 1.5753 4.6938 11 6 5.2277 0.7014 5.8363 12 1 5.3486 -0.3616 5.6880 13 6 5.4856 1.2588 7.0707 14 7 5.3389 2.5533 7.2512 15 14 6.0434 0.1757 8.4866 16 1 7.5260 0.0916 8.4912 17 1 5.5766 0.7592 9.7700 18 1 5.4711 -1.1850 8.3242 19 6 3.9781 0.3199 -1.1826 20 1 3.5337 -0.6716 -1.0951 21 6 5.5049 0.1977 -1.1839 22 6 5.9409 -0.6042 -2.4141 23 6 5.4119 0.0834 -3.6755 24 8 3.9894 0.1928 -3.5958 25 6 3.5250 0.9718 -2.4915 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6886 1.8464 -0.8899 30 1 1.6886 1.8464 0.8900 31 1 4.1323 -0.3926 1.2893 32 1 4.7283 -0.2054 3.5386 33 1 5.5405 2.3272 4.4894 34 1 3.8435 2.0686 4.9602 35 1 5.5200 2.9454 8.1197 36 1 5.9504 1.1919 -1.2202 37 1 5.8305 -0.3164 -0.2795 38 1 7.0293 -0.6489 -2.4529 39 1 5.5368 -1.6146 -2.3523 40 1 5.8490 1.0786 -3.7575 41 1 5.6829 -0.5058 -4.5515 42 1 2.4363 1.0224 -2.5146 43 1 3.9373 1.9786 -2.5580 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888907990.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:38 Heat of formation + Delta-G solvation = -137.821110 kcal Electronic energy + Delta-G solvation = -23553.064512 eV Core-core repulsion = 20018.964879 eV Total energy + Delta-G solvation = -3534.099633 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.17337 -38.92889 -37.75957 -35.47244 -34.05548 -33.07013 -32.37456 -31.45713 -28.76705 -27.06469 -26.11696 -25.03035 -24.25433 -22.65238 -21.20479 -20.27002 -20.00022 -18.08894 -16.91346 -16.50902 -16.03460 -15.94421 -15.65195 -15.54119 -15.28162 -14.83596 -14.62025 -14.40111 -14.07984 -13.71278 -13.28003 -13.05923 -12.79426 -12.57722 -12.30159 -12.00874 -11.92323 -11.70042 -11.59942 -11.32651 -11.02142 -10.94046 -10.87526 -10.57446 -10.46442 -10.28241 -9.68990 -9.67755 -9.35734 -9.32764 -8.75091 -8.65429 -7.73156 -6.13867 -4.20110 3.25770 3.29011 3.32858 3.37639 3.68227 3.76877 4.00853 4.34262 4.49435 4.59199 4.71159 4.80552 4.93818 5.09941 5.11247 5.15509 5.22276 5.23947 5.28411 5.35133 5.40215 5.49809 5.52075 5.58287 5.62749 5.66420 5.78858 5.88018 5.90478 6.04846 6.25259 6.88818 6.99098 7.10513 7.18980 7.54623 7.58531 7.59309 7.94063 8.07563 8.79066 8.97876 9.36096 9.50701 10.96435 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.020858 B = 0.003541 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.075896 B = 7906.116707 C = 8619.934205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.044 3.956 4 C 0.180 3.820 5 H 0.099 0.901 6 N -0.744 5.744 7 C 0.694 3.306 8 O -0.605 6.605 9 N -0.729 5.729 10 C 0.268 3.732 11 C -0.541 4.541 12 H 0.062 0.938 13 C 0.063 3.937 14 N -0.886 5.886 15 Si 0.904 3.096 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.125 4.125 20 H 0.094 0.906 21 C -0.118 4.118 22 C -0.155 4.155 23 C 0.058 3.942 24 O -0.381 6.381 25 C 0.070 3.930 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.394 0.606 32 H 0.386 0.614 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.265 0.735 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.793 -6.594 -20.663 22.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C -0.034 4.034 4 C 0.073 3.927 5 H 0.117 0.883 6 N -0.400 5.400 7 C 0.394 3.606 8 O -0.485 6.485 9 N -0.381 5.381 10 C 0.146 3.854 11 C -0.579 4.579 12 H 0.080 0.920 13 C -0.140 4.140 14 N -0.524 5.524 15 Si 0.731 3.269 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.145 4.145 20 H 0.112 0.888 21 C -0.155 4.155 22 C -0.193 4.193 23 C -0.018 4.018 24 O -0.299 6.299 25 C -0.007 4.007 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.227 0.773 32 H 0.218 0.782 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.952 -5.552 -20.629 21.725 hybrid contribution 0.384 -1.011 1.198 1.614 sum -3.568 -6.563 -19.431 20.817 Atomic orbital electron populations 1.22707 0.81475 1.02448 0.99815 1.87858 1.19268 1.27713 1.95386 1.23139 0.94491 0.84979 1.00798 1.20661 0.91232 0.97824 0.82945 0.88294 1.45065 1.74722 1.10640 1.09563 1.16155 0.78566 0.85352 0.80528 1.90856 1.59756 1.13331 1.84527 1.45706 1.70482 1.11525 1.10360 1.18958 0.96872 0.90357 0.79164 1.21238 1.47267 0.94405 0.95026 0.91969 1.24946 0.95221 0.95144 0.98733 1.69982 1.47785 1.10417 1.24175 0.86416 0.78877 0.80332 0.81273 1.20496 1.21035 1.19773 1.21977 0.96515 1.01585 0.94374 0.88758 1.21636 0.94720 1.00867 0.98288 1.22190 1.01251 1.00380 0.95457 1.22592 0.81470 0.99842 0.97926 1.87938 1.21343 1.73126 1.47535 1.22595 0.99855 0.93420 0.84854 0.89870 0.94136 0.94391 0.92884 0.92124 0.77294 0.78165 0.95797 0.95839 0.92500 0.91653 0.90906 0.90907 0.91026 0.93228 0.89105 0.88633 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -4.82 9.77 -35.23 -0.34 -5.17 16 3 C 0.04 0.56 5.25 37.16 0.19 0.75 16 4 C 0.18 2.35 1.95 -67.93 -0.13 2.21 16 5 H 0.10 1.43 7.58 -51.93 -0.39 1.03 16 6 N -0.74 -11.22 4.39 -58.67 -0.26 -11.48 16 7 C 0.69 14.26 8.53 -86.91 -0.74 13.52 16 8 O -0.60 -14.86 16.01 5.29 0.08 -14.77 16 9 N -0.73 -15.75 5.55 -66.42 -0.37 -16.12 16 10 C 0.27 7.22 5.43 -5.19 -0.03 7.19 16 11 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 12 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 14 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 15 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 C -0.13 -1.32 1.82 -90.48 -0.17 -1.49 16 20 H 0.09 1.07 7.56 -51.93 -0.39 0.68 16 21 C -0.12 -1.19 5.10 -26.55 -0.14 -1.32 16 22 C -0.16 -1.33 6.14 -26.59 -0.16 -1.49 16 23 C 0.06 0.50 6.84 37.21 0.25 0.76 16 24 O -0.38 -4.13 10.76 -35.23 -0.38 -4.51 16 25 C 0.07 0.69 5.71 37.20 0.21 0.91 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.55 6.77 -51.93 -0.35 0.20 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.39 5.12 8.42 -40.82 -0.34 4.77 16 32 H 0.39 7.22 8.33 -40.82 -0.34 6.88 16 33 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.78 7.56 -51.93 -0.39 0.38 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 0.90 6.70 -51.93 -0.35 0.55 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 349.67 15.07 5.27 5.27 Total: -1.00 -33.01 349.67 -7.46 -40.47 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -7.17 Total: 6.91 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -0.01 Total: 8.98 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 0.11 Total: -53.16 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.64 Total: -24.45 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.01 -7.46 -40.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888907990.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.350 kcal (2) G-P(sol) polarization free energy of solvation -33.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds