Wall clock time and date at job start Tue Mar 31 2020 02:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47113 * 175.00262 * 4 3 2 6 6 N 1.46506 * 109.46967 * 294.99906 * 4 3 2 7 7 C 1.34778 * 119.99759 * 275.00039 * 6 4 3 8 8 O 1.21581 * 120.00595 * 0.02562 * 7 6 4 9 9 N 1.34781 * 119.99388 * 180.02562 * 7 6 4 10 10 C 1.46501 * 119.99607 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47031 * 179.97438 * 10 9 7 12 12 H 1.08004 * 120.00318 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00399 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99593 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00414 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46987 * 90.00021 * 15 13 11 17 17 H 1.48504 * 109.47173 * 210.00394 * 15 13 11 18 18 H 1.48502 * 109.47043 * 330.00528 * 15 13 11 19 19 C 1.52996 * 109.47316 * 55.00160 * 4 3 2 20 20 H 1.08996 * 109.52118 * 300.12604 * 19 4 3 21 21 C 1.53176 * 109.52000 * 180.02562 * 19 4 3 22 22 C 1.53181 * 109.03356 * 183.11144 * 21 19 4 23 23 C 1.53099 * 109.16350 * 56.98160 * 22 21 19 24 24 O 1.42899 * 109.41268 * 302.39364 * 23 22 21 25 25 C 1.42898 * 114.10262 * 61.15375 * 24 23 22 26 26 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47054 * 299.99711 * 1 2 3 28 28 H 1.09000 * 109.47187 * 59.99767 * 1 2 3 29 29 H 1.08997 * 109.47442 * 300.00036 * 3 2 1 30 30 H 1.08997 * 109.47171 * 60.00232 * 3 2 1 31 31 H 0.96994 * 119.99619 * 95.00401 * 6 4 3 32 32 H 0.96994 * 120.00559 * 359.97438 * 9 7 6 33 33 H 1.09004 * 109.47100 * 299.99805 * 10 9 7 34 34 H 1.08995 * 109.47288 * 59.99815 * 10 9 7 35 35 H 0.96993 * 119.99770 * 179.97438 * 14 13 11 36 36 H 1.09002 * 109.54898 * 302.97490 * 21 19 4 37 37 H 1.09004 * 109.54950 * 63.24939 * 21 19 4 38 38 H 1.09000 * 109.52451 * 176.88276 * 22 21 19 39 39 H 1.08995 * 109.52759 * 297.01204 * 22 21 19 40 40 H 1.09005 * 109.47969 * 62.37166 * 23 22 21 41 41 H 1.08992 * 109.48096 * 182.39781 * 23 22 21 42 42 H 1.09003 * 109.48376 * 178.85989 * 25 24 23 43 43 H 1.09006 * 109.47694 * 58.82590 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1766 -0.0902 6 7 3.9766 0.5640 1.2509 7 6 4.1662 1.3222 2.3489 8 8 3.9707 2.5213 2.3010 9 7 4.5726 0.7512 3.5002 10 6 4.7782 1.5753 4.6938 11 6 5.2277 0.7014 5.8363 12 1 5.3486 -0.3616 5.6880 13 6 5.4856 1.2588 7.0707 14 7 5.3389 2.5533 7.2512 15 14 6.0434 0.1757 8.4866 16 1 7.5260 0.0916 8.4912 17 1 5.5766 0.7592 9.7700 18 1 5.4711 -1.1850 8.3242 19 6 3.9781 0.3199 -1.1826 20 1 3.5337 -0.6716 -1.0951 21 6 5.5049 0.1977 -1.1839 22 6 5.9409 -0.6042 -2.4141 23 6 5.4119 0.0834 -3.6755 24 8 3.9894 0.1928 -3.5958 25 6 3.5250 0.9718 -2.4915 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6886 1.8464 -0.8899 30 1 1.6886 1.8464 0.8900 31 1 4.1323 -0.3926 1.2893 32 1 4.7283 -0.2054 3.5386 33 1 5.5405 2.3272 4.4894 34 1 3.8435 2.0686 4.9602 35 1 5.5200 2.9454 8.1197 36 1 5.9504 1.1919 -1.2202 37 1 5.8305 -0.3164 -0.2795 38 1 7.0293 -0.6489 -2.4529 39 1 5.5368 -1.6146 -2.3523 40 1 5.8490 1.0786 -3.7575 41 1 5.6829 -0.5058 -4.5515 42 1 2.4363 1.0224 -2.5146 43 1 3.9373 1.9786 -2.5580 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888907990.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:38 Heat of formation + Delta-G solvation = -163.188558 kcal Electronic energy + Delta-G solvation = -23554.164527 eV Core-core repulsion = 20018.964879 eV Total energy + Delta-G solvation = -3535.199648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.36009 -40.19885 -38.79095 -36.67730 -35.97193 -34.44785 -33.93066 -32.61216 -29.86476 -28.90461 -27.04162 -25.95077 -25.21282 -24.50325 -22.35157 -21.63597 -21.13236 -19.76170 -18.14428 -17.92271 -17.30176 -17.00741 -16.84246 -16.65395 -16.46416 -16.21723 -15.87269 -15.60225 -15.43752 -14.89878 -14.74705 -14.17548 -14.03535 -14.02543 -13.55724 -13.45295 -13.16207 -12.91276 -12.84019 -12.70640 -12.43038 -12.21865 -12.08886 -11.88223 -11.47554 -11.45894 -11.26451 -11.21305 -10.79534 -10.60824 -10.41232 -10.23175 -9.58010 -8.27926 -6.44100 1.43552 1.46296 1.57264 1.86617 2.25683 2.39830 2.85625 2.94051 3.07059 3.49238 3.61883 3.74580 3.90011 4.06529 4.18536 4.22592 4.27974 4.37223 4.49847 4.51465 4.54399 4.63345 4.68084 4.74587 4.81945 4.86842 4.96914 5.03285 5.10046 5.14399 5.22697 5.28373 5.40198 5.50253 5.57061 5.69542 5.86386 6.16986 6.25047 6.30209 6.67748 7.25226 7.32302 7.74381 8.84442 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.020858 B = 0.003541 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.075896 B = 7906.116707 C = 8619.934205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.049 3.951 4 C 0.177 3.823 5 H 0.085 0.915 6 N -0.720 5.720 7 C 0.694 3.306 8 O -0.648 6.648 9 N -0.724 5.724 10 C 0.287 3.713 11 C -0.555 4.555 12 H 0.082 0.918 13 C 0.004 3.996 14 N -0.931 5.931 15 Si 0.986 3.014 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.257 1.257 19 C -0.110 4.110 20 H 0.093 0.907 21 C -0.120 4.120 22 C -0.149 4.149 23 C 0.053 3.947 24 O -0.395 6.395 25 C 0.071 3.929 26 H 0.099 0.901 27 H 0.031 0.969 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.027 0.973 31 H 0.408 0.592 32 H 0.403 0.597 33 H -0.014 1.014 34 H -0.016 1.016 35 H 0.269 0.731 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.512 -8.933 -21.666 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C -0.029 4.029 4 C 0.071 3.929 5 H 0.103 0.897 6 N -0.376 5.376 7 C 0.394 3.606 8 O -0.531 6.531 9 N -0.378 5.378 10 C 0.164 3.836 11 C -0.593 4.593 12 H 0.100 0.900 13 C -0.195 4.195 14 N -0.569 5.569 15 Si 0.809 3.191 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.180 1.180 19 C -0.129 4.129 20 H 0.111 0.889 21 C -0.158 4.158 22 C -0.187 4.187 23 C -0.023 4.023 24 O -0.313 6.313 25 C -0.006 4.006 26 H 0.118 0.882 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.046 0.954 31 H 0.244 0.756 32 H 0.238 0.762 33 H 0.004 0.996 34 H 0.002 0.998 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.126 0.874 42 H 0.120 0.880 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.681 -7.960 -21.700 23.405 hybrid contribution 0.252 -0.258 1.409 1.454 sum -3.429 -8.218 -20.291 22.159 Atomic orbital electron populations 1.22895 0.80042 1.03747 1.00323 1.87828 1.20843 1.27253 1.95460 1.23008 0.94004 0.85296 1.00562 1.20839 0.91732 0.97661 0.82642 0.89725 1.44858 1.73115 1.10957 1.08669 1.16272 0.78091 0.85017 0.81212 1.90825 1.61395 1.15532 1.85299 1.45308 1.71050 1.11882 1.09528 1.18382 0.93632 0.90281 0.81327 1.21602 1.47163 0.95296 0.95201 0.89976 1.26055 0.94916 0.96567 1.02000 1.70142 1.48835 1.12768 1.25171 0.85148 0.78595 0.78601 0.76802 1.19551 1.20930 1.18033 1.21840 0.96832 1.00764 0.93488 0.88918 1.21653 0.94259 1.00799 0.99040 1.22154 1.02103 0.99942 0.94477 1.22775 0.80443 1.00559 0.98562 1.87925 1.22645 1.73256 1.47523 1.22602 1.00341 0.93536 0.84138 0.88219 0.95057 0.92468 0.90099 0.95414 0.75629 0.76194 0.99589 0.99808 0.92248 0.92319 0.91535 0.89573 0.90964 0.92680 0.87374 0.87981 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 16 2 O -0.39 -9.40 9.77 -148.98 -1.46 -10.86 16 3 C 0.05 1.23 5.25 71.98 0.38 1.61 16 4 C 0.18 4.55 1.95 44.99 0.09 4.64 16 5 H 0.08 2.47 7.58 -2.38 -0.02 2.45 16 6 N -0.72 -21.62 4.39 -457.81 -2.01 -23.63 16 7 C 0.69 29.25 8.53 179.05 1.53 30.78 16 8 O -0.65 -33.25 16.01 -3.97 -0.06 -33.31 16 9 N -0.72 -31.91 5.55 -482.30 -2.68 -34.59 16 10 C 0.29 16.14 5.43 85.63 0.46 16.61 16 11 C -0.55 -30.61 9.28 25.60 0.24 -30.37 16 12 H 0.08 4.11 7.60 -2.91 -0.02 4.08 16 13 C 0.00 0.23 5.46 84.65 0.46 0.70 16 14 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 15 Si 0.99 42.63 29.54 68.60 2.03 44.65 16 16 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 17 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 19 C -0.11 -2.17 1.82 -10.71 -0.02 -2.19 16 20 H 0.09 1.92 7.56 -2.39 -0.02 1.90 16 21 C -0.12 -2.26 5.10 30.71 0.16 -2.11 16 22 C -0.15 -2.23 6.14 30.69 0.19 -2.04 16 23 C 0.05 0.78 6.84 72.02 0.49 1.28 16 24 O -0.39 -7.68 10.76 -148.98 -1.60 -9.28 16 25 C 0.07 1.28 5.71 72.01 0.41 1.69 16 26 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 1.56 6.77 -2.39 -0.02 1.55 16 30 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.41 10.14 8.42 -92.71 -0.78 9.36 16 32 H 0.40 14.86 8.33 -92.71 -0.77 14.09 16 33 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 34 H -0.02 -1.02 8.14 -2.39 -0.02 -1.03 16 35 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.33 7.56 -2.39 -0.02 1.31 16 38 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.10 1.68 6.70 -2.39 -0.02 1.67 16 43 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -73.31 349.67 -0.41 -73.72 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: -0.54 Total: 27.26 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 5.63 Total: 22.32 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -4.40 Total: -114.50 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -3.12 Total: -53.45 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -73.31 -0.41 -73.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888907990.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.468 kcal (2) G-P(sol) polarization free energy of solvation -73.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds