Wall clock time and date at job start Tue Mar 31 2020 03:13:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46899 * 1
3 3 C 1.46896 * 111.00022 * 2 1
4 4 C 1.50695 * 109.47490 * 293.95190 * 3 2 1
5 5 H 1.08001 * 120.00064 * 0.02562 * 4 3 2
6 6 C 1.37878 * 120.00398 * 179.97438 * 4 3 2
7 7 N 1.31518 * 119.99705 * 0.02562 * 6 4 3
8 8 Si 1.86798 * 120.00418 * 180.02562 * 6 4 3
9 9 H 1.48506 * 109.46876 * 0.02562 * 8 6 4
10 10 H 1.48490 * 109.47333 * 119.99985 * 8 6 4
11 11 H 1.48500 * 109.46975 * 240.00330 * 8 6 4
12 12 C 1.46897 * 111.00036 * 123.95670 * 2 1 3
13 13 C 1.53004 * 109.47420 * 66.04370 * 12 2 1
14 14 H 1.08998 * 109.46924 * 305.00385 * 13 12 2
15 15 O 1.42906 * 109.46892 * 64.99840 * 13 12 2
16 16 C 1.52993 * 109.47360 * 185.00010 * 13 12 2
17 17 N 1.46905 * 109.47039 * 180.02562 * 16 13 12
18 18 C 1.46901 * 110.99870 * 180.02562 * 17 16 13
19 19 C 1.53004 * 109.46916 * 180.02562 * 18 17 16
20 20 C 1.52996 * 109.46700 * 179.97438 * 19 18 17
21 21 H 1.09006 * 109.47599 * 54.99976 * 20 19 18
22 22 O 1.42901 * 109.47427 * 294.99664 * 20 19 18
23 23 C 1.53003 * 109.46791 * 174.99763 * 20 19 18
24 24 C 1.53002 * 117.49806 * 248.74644 * 23 20 19
25 25 C 1.53000 * 117.49869 * 180.09061 * 23 20 19
26 26 H 1.08994 * 109.46860 * 296.04367 * 1 2 3
27 27 H 1.08998 * 109.46744 * 56.04690 * 1 2 3
28 28 H 1.09004 * 109.47044 * 176.04407 * 1 2 3
29 29 H 1.08997 * 109.47453 * 53.95745 * 3 2 1
30 30 H 1.09009 * 109.46916 * 173.95393 * 3 2 1
31 31 H 0.97003 * 120.00087 * 179.97438 * 7 6 4
32 32 H 1.09001 * 109.47431 * 306.04688 * 12 2 1
33 33 H 1.08997 * 109.47363 * 186.04585 * 12 2 1
34 34 H 0.96709 * 113.99630 * 60.00107 * 15 13 12
35 35 H 1.09001 * 109.47393 * 60.00433 * 16 13 12
36 36 H 1.08998 * 109.47408 * 300.00078 * 16 13 12
37 37 H 1.00901 * 110.99869 * 56.04956 * 17 16 13
38 38 H 1.09004 * 109.47031 * 299.99620 * 18 17 16
39 39 H 1.08995 * 109.47111 * 59.99900 * 18 17 16
40 40 H 1.08995 * 109.46615 * 299.99641 * 19 18 17
41 41 H 1.08996 * 109.46939 * 60.00272 * 19 18 17
42 42 H 0.96694 * 113.99996 * 300.00644 * 22 20 19
43 43 H 1.08997 * 115.54971 * 34.42103 * 23 20 19
44 44 H 1.08997 * 117.50148 * 0.02562 * 24 23 20
45 45 H 1.09000 * 117.49630 * 145.02472 * 24 23 20
46 46 H 1.09001 * 117.49763 * 214.98099 * 25 23 20
47 47 H 1.08998 * 117.49923 * 359.97438 * 25 23 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.6370 2.0471 -1.2984
5 1 1.0740 1.5116 -2.0485
6 6 2.0269 3.3495 -1.5284
7 7 2.7120 4.0019 -0.6148
8 14 1.5820 4.1874 -3.1376
9 1 0.8138 3.2450 -3.9905
10 1 0.7545 5.3882 -2.8582
11 1 2.8234 4.5949 -3.8432
12 6 1.9954 -0.7660 1.1375
13 6 1.6314 -2.2427 0.9703
14 1 0.5532 -2.3389 0.8432
15 8 2.2955 -2.7696 -0.1801
16 6 2.0699 -3.0200 2.2130
17 7 1.7209 -4.4379 2.0521
18 6 2.1274 -5.2169 3.2293
19 6 1.7488 -6.6852 3.0247
20 6 2.1728 -7.4966 4.2506
21 1 1.7361 -7.0560 5.1469
22 8 3.5976 -7.4853 4.3599
23 6 1.6841 -8.9388 4.1014
24 6 0.5761 -9.4105 5.0451
25 6 2.0088 -9.9154 5.2335
26 1 -0.3633 0.4512 0.9233
27 1 -0.3633 0.5740 -0.8524
28 1 -0.3633 -1.0253 -0.0709
29 1 1.5612 1.9273 0.8309
30 1 3.0798 1.3443 0.1083
31 1 2.9866 4.9180 -0.7768
32 1 1.5611 -0.3874 2.0628
33 1 3.0797 -0.6612 1.1756
34 1 3.2602 -2.7167 -0.1361
35 1 1.5633 -2.6181 3.0905
36 1 3.1482 -2.9237 2.3401
37 1 2.1268 -4.8168 1.2096
38 1 3.2060 -5.1356 3.3641
39 1 1.6206 -4.8304 4.1135
40 1 0.6704 -6.7668 2.8897
41 1 2.2561 -7.0714 2.1407
42 1 4.0536 -7.8634 3.5957
43 1 1.6798 -9.3308 3.0843
44 1 0.1949 -8.6933 5.7720
45 1 -0.1570 -10.1132 4.6491
46 1 2.2176 -10.9500 4.9613
47 1 2.5708 -9.5306 6.0844
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000905692026.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:13:37
Heat of formation + Delta-G solvation = -82.515305 kcal
Electronic energy + Delta-G solvation = -22377.408327 eV
Core-core repulsion = 18981.540029 eV
Total energy + Delta-G solvation = -3395.868299 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 286.204 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-39.21132 -38.30069 -36.36108 -35.75692 -34.98966 -32.51989 -31.74558 -29.43323
-27.16379 -26.46989 -24.98823 -23.19629 -22.77611 -21.92001 -21.21328 -21.14275
-20.13680 -17.13021 -16.62080 -16.36303 -16.22703 -15.85092 -15.70023 -15.19006
-14.86264 -14.49584 -14.21069 -14.12109 -13.73884 -13.52153 -13.17588 -12.96488
-12.45583 -12.40567 -11.96976 -11.90954 -11.88066 -11.33922 -11.25581 -11.22001
-11.08976 -10.99334 -10.86528 -10.73665 -10.65252 -10.64306 -10.28499 -10.22906
-9.98484 -9.58698 -9.08812 -8.51931 -8.42641 -7.17466 -6.01457 -4.02261
3.25034 3.32420 3.39593 3.45422 3.76394 4.13192 4.23707 4.43560
4.46569 4.58211 4.66015 4.68218 4.75733 4.93157 5.04888 5.08560
5.22366 5.25045 5.28598 5.33943 5.40607 5.42550 5.47919 5.53407
5.67188 5.69279 5.71954 5.76800 5.85499 5.89101 6.08456 6.22760
6.35306 6.44181 6.80328 6.87598 7.27119 7.28518 7.30162 7.34753
7.82256 7.96706 8.11738 8.22618 8.57395 9.06216 9.61930 11.09572
Molecular weight = 286.20amu
Principal moments of inertia in cm(-1)
A = 0.053520 B = 0.002058 C = 0.002039
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 523.039898 B =13602.728566 C =13726.262918
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 N -0.530 5.530
3 C 0.192 3.808
4 C -0.504 4.504
5 H 0.065 0.935
6 C 0.053 3.947
7 N -0.900 5.900
8 Si 0.899 3.101
9 H -0.272 1.272
10 H -0.285 1.285
11 H -0.284 1.284
12 C 0.025 3.975
13 C 0.114 3.886
14 H 0.104 0.896
15 O -0.547 6.547
16 C 0.028 3.972
17 N -0.686 5.686
18 C 0.061 3.939
19 C -0.145 4.145
20 C 0.138 3.862
21 H 0.098 0.902
22 O -0.559 6.559
23 C -0.194 4.194
24 C -0.173 4.173
25 C -0.168 4.168
26 H 0.008 0.992
27 H 0.074 0.926
28 H 0.048 0.952
29 H -0.011 1.011
30 H 0.028 0.972
31 H 0.260 0.740
32 H 0.029 0.971
33 H 0.068 0.932
34 H 0.366 0.634
35 H 0.077 0.923
36 H 0.031 0.969
37 H 0.346 0.654
38 H 0.034 0.966
39 H 0.068 0.932
40 H 0.082 0.918
41 H 0.065 0.935
42 H 0.374 0.626
43 H 0.106 0.894
44 H 0.096 0.904
45 H 0.095 0.905
46 H 0.093 0.907
47 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.903 -25.499 11.108 27.828
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 N -0.254 5.254
3 C 0.067 3.933
4 C -0.543 4.543
5 H 0.083 0.917
6 C -0.148 4.148
7 N -0.540 5.540
8 Si 0.727 3.273
9 H -0.196 1.196
10 H -0.212 1.212
11 H -0.210 1.210
12 C -0.105 4.105
13 C 0.054 3.946
14 H 0.121 0.879
15 O -0.350 6.350
16 C -0.102 4.102
17 N -0.318 5.318
18 C -0.068 4.068
19 C -0.183 4.183
20 C 0.078 3.922
21 H 0.116 0.884
22 O -0.364 6.364
23 C -0.213 4.213
24 C -0.211 4.211
25 C -0.205 4.205
26 H 0.027 0.973
27 H 0.093 0.907
28 H 0.066 0.934
29 H 0.007 0.993
30 H 0.046 0.954
31 H 0.070 0.930
32 H 0.047 0.953
33 H 0.087 0.913
34 H 0.212 0.788
35 H 0.096 0.904
36 H 0.050 0.950
37 H 0.165 0.835
38 H 0.053 0.947
39 H 0.087 0.913
40 H 0.101 0.899
41 H 0.084 0.916
42 H 0.221 0.779
43 H 0.124 0.876
44 H 0.114 0.886
45 H 0.114 0.886
46 H 0.111 0.889
47 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges -2.066 -25.281 11.306 27.771
hybrid contribution 1.136 0.861 -0.437 1.491
sum -0.930 -24.420 10.869 26.746
Atomic orbital electron populations
1.22263 0.88967 0.99658 1.00401 1.62027 1.06871 1.17391 1.39134
1.19750 0.95254 0.81673 0.96645 1.21218 1.34545 0.96827 1.01689
0.91714 1.25008 0.95362 0.97374 0.97053 1.69975 1.38613 1.11387
1.34063 0.86426 0.78139 0.79263 0.83517 1.19607 1.21156 1.21031
1.22714 1.00380 0.93911 0.93479 1.22002 0.98253 0.90708 0.83637
0.87857 1.86608 1.22776 1.83844 1.41782 1.22673 0.98534 0.89036
0.99977 1.60375 1.64320 1.02092 1.05057 1.21886 0.98368 0.92581
0.93988 1.22229 1.03144 0.95006 0.97908 1.21466 0.80908 0.91267
0.98521 0.88436 1.86593 1.18052 1.85058 1.46696 1.23099 1.05043
0.96578 0.96537 1.22963 0.91895 1.03783 1.02413 1.22872 0.98455
0.98762 1.00456 0.97309 0.90688 0.93367 0.99292 0.95412 0.93033
0.95329 0.91319 0.78809 0.90434 0.95033 0.83477 0.94731 0.91317
0.89932 0.91631 0.77860 0.87615 0.88560 0.88635 0.88852 0.88390
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.72 9.14 60.06 0.55 1.27 16
2 N -0.53 -11.70 4.70 -244.38 -1.15 -12.84 16
3 C 0.19 5.09 4.72 -4.98 -0.02 5.07 16
4 C -0.50 -14.45 8.46 -34.44 -0.29 -14.74 16
5 H 0.06 1.85 7.12 -52.49 -0.37 1.48 16
6 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16
7 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16
8 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16
9 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16
10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16
12 C 0.02 0.44 4.60 -3.82 -0.02 0.42 16
13 C 0.11 1.67 3.19 -26.73 -0.09 1.58 16
14 H 0.10 1.64 6.34 -51.93 -0.33 1.31 16
15 O -0.55 -8.33 12.62 -35.23 -0.44 -8.77 16
16 C 0.03 0.33 5.39 -3.82 -0.02 0.31 16
17 N -0.69 -7.50 6.50 -113.78 -0.74 -8.24 16
18 C 0.06 0.57 5.58 -3.82 -0.02 0.54 16
19 C -0.14 -1.07 5.14 -26.73 -0.14 -1.21 16
20 C 0.14 0.97 3.16 -26.73 -0.08 0.88 16
21 H 0.10 0.74 7.90 -51.93 -0.41 0.33 16
22 O -0.56 -4.39 12.78 -35.23 -0.45 -4.84 16
23 C -0.19 -1.20 5.36 -90.62 -0.49 -1.69 16
24 C -0.17 -1.02 10.18 -26.69 -0.27 -1.29 16
25 C -0.17 -1.02 10.16 -26.70 -0.27 -1.29 16
26 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16
27 H 0.07 1.63 6.76 -51.93 -0.35 1.28 16
28 H 0.05 0.86 6.37 -51.93 -0.33 0.53 16
29 H -0.01 -0.30 8.12 -51.93 -0.42 -0.73 16
30 H 0.03 0.78 7.93 -51.92 -0.41 0.37 16
31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16
32 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16
33 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16
34 H 0.37 4.49 9.05 45.56 0.41 4.91 16
35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16
36 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16
37 H 0.35 3.74 8.12 -39.29 -0.32 3.42 16
38 H 0.03 0.34 7.82 -51.93 -0.41 -0.07 16
39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
42 H 0.37 1.81 9.04 45.56 0.41 2.22 16
43 H 0.11 0.61 8.11 -51.93 -0.42 0.19 16
44 H 0.10 0.54 8.05 -51.93 -0.42 0.13 16
45 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16
46 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16
47 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16
LS Contribution 379.67 15.07 5.72 5.72
Total: -1.00 -32.13 379.67 -9.75 -41.88
By element:
Atomic # 1 Polarization: 12.35 SS G_CDS: -7.14 Total: 5.21 kcal
Atomic # 6 Polarization: -7.45 SS G_CDS: -1.26 Total: -8.71 kcal
Atomic # 7 Polarization: -46.26 SS G_CDS: -1.15 Total: -47.42 kcal
Atomic # 8 Polarization: -12.71 SS G_CDS: -0.90 Total: -13.61 kcal
Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal
Total LS contribution 5.72 Total: 5.72 kcal
Total: -32.13 -9.75 -41.88 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000905692026.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.640 kcal
(2) G-P(sol) polarization free energy of solvation -32.128 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.768 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.875 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.515 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds