Wall clock time and date at job start Tue Mar 31 2020 03:13:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46899 * 1
3 3 C 1.46896 * 111.00022 * 2 1
4 4 C 1.50695 * 109.47490 * 293.95190 * 3 2 1
5 5 H 1.08001 * 120.00064 * 0.02562 * 4 3 2
6 6 C 1.37878 * 120.00398 * 179.97438 * 4 3 2
7 7 N 1.31518 * 119.99705 * 0.02562 * 6 4 3
8 8 Si 1.86798 * 120.00418 * 180.02562 * 6 4 3
9 9 H 1.48506 * 109.46876 * 0.02562 * 8 6 4
10 10 H 1.48490 * 109.47333 * 119.99985 * 8 6 4
11 11 H 1.48500 * 109.46975 * 240.00330 * 8 6 4
12 12 C 1.46897 * 111.00036 * 123.95670 * 2 1 3
13 13 C 1.53004 * 109.47420 * 66.04370 * 12 2 1
14 14 H 1.08998 * 109.46924 * 305.00385 * 13 12 2
15 15 O 1.42906 * 109.46892 * 64.99840 * 13 12 2
16 16 C 1.52993 * 109.47360 * 185.00010 * 13 12 2
17 17 N 1.46905 * 109.47039 * 180.02562 * 16 13 12
18 18 C 1.46901 * 110.99870 * 180.02562 * 17 16 13
19 19 C 1.53004 * 109.46916 * 180.02562 * 18 17 16
20 20 C 1.52996 * 109.46700 * 179.97438 * 19 18 17
21 21 H 1.09006 * 109.47599 * 54.99976 * 20 19 18
22 22 O 1.42901 * 109.47427 * 294.99664 * 20 19 18
23 23 C 1.53003 * 109.46791 * 174.99763 * 20 19 18
24 24 C 1.53002 * 117.49806 * 248.74644 * 23 20 19
25 25 C 1.53000 * 117.49869 * 180.09061 * 23 20 19
26 26 H 1.08994 * 109.46860 * 296.04367 * 1 2 3
27 27 H 1.08998 * 109.46744 * 56.04690 * 1 2 3
28 28 H 1.09004 * 109.47044 * 176.04407 * 1 2 3
29 29 H 1.08997 * 109.47453 * 53.95745 * 3 2 1
30 30 H 1.09009 * 109.46916 * 173.95393 * 3 2 1
31 31 H 0.97003 * 120.00087 * 179.97438 * 7 6 4
32 32 H 1.09001 * 109.47431 * 306.04688 * 12 2 1
33 33 H 1.08997 * 109.47363 * 186.04585 * 12 2 1
34 34 H 0.96709 * 113.99630 * 60.00107 * 15 13 12
35 35 H 1.09001 * 109.47393 * 60.00433 * 16 13 12
36 36 H 1.08998 * 109.47408 * 300.00078 * 16 13 12
37 37 H 1.00901 * 110.99869 * 56.04956 * 17 16 13
38 38 H 1.09004 * 109.47031 * 299.99620 * 18 17 16
39 39 H 1.08995 * 109.47111 * 59.99900 * 18 17 16
40 40 H 1.08995 * 109.46615 * 299.99641 * 19 18 17
41 41 H 1.08996 * 109.46939 * 60.00272 * 19 18 17
42 42 H 0.96694 * 113.99996 * 300.00644 * 22 20 19
43 43 H 1.08997 * 115.54971 * 34.42103 * 23 20 19
44 44 H 1.08997 * 117.50148 * 0.02562 * 24 23 20
45 45 H 1.09000 * 117.49630 * 145.02472 * 24 23 20
46 46 H 1.09001 * 117.49763 * 214.98099 * 25 23 20
47 47 H 1.08998 * 117.49923 * 359.97438 * 25 23 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.6370 2.0471 -1.2984
5 1 1.0740 1.5116 -2.0485
6 6 2.0269 3.3495 -1.5284
7 7 2.7120 4.0019 -0.6148
8 14 1.5820 4.1874 -3.1376
9 1 0.8138 3.2450 -3.9905
10 1 0.7545 5.3882 -2.8582
11 1 2.8234 4.5949 -3.8432
12 6 1.9954 -0.7660 1.1375
13 6 1.6314 -2.2427 0.9703
14 1 0.5532 -2.3389 0.8432
15 8 2.2955 -2.7696 -0.1801
16 6 2.0699 -3.0200 2.2130
17 7 1.7209 -4.4379 2.0521
18 6 2.1274 -5.2169 3.2293
19 6 1.7488 -6.6852 3.0247
20 6 2.1728 -7.4966 4.2506
21 1 1.7361 -7.0560 5.1469
22 8 3.5976 -7.4853 4.3599
23 6 1.6841 -8.9388 4.1014
24 6 0.5761 -9.4105 5.0451
25 6 2.0088 -9.9154 5.2335
26 1 -0.3633 0.4512 0.9233
27 1 -0.3633 0.5740 -0.8524
28 1 -0.3633 -1.0253 -0.0709
29 1 1.5612 1.9273 0.8309
30 1 3.0798 1.3443 0.1083
31 1 2.9866 4.9180 -0.7768
32 1 1.5611 -0.3874 2.0628
33 1 3.0797 -0.6612 1.1756
34 1 3.2602 -2.7167 -0.1361
35 1 1.5633 -2.6181 3.0905
36 1 3.1482 -2.9237 2.3401
37 1 2.1268 -4.8168 1.2096
38 1 3.2060 -5.1356 3.3641
39 1 1.6206 -4.8304 4.1135
40 1 0.6704 -6.7668 2.8897
41 1 2.2561 -7.0714 2.1407
42 1 4.0536 -7.8634 3.5957
43 1 1.6798 -9.3308 3.0843
44 1 0.1949 -8.6933 5.7720
45 1 -0.1570 -10.1132 4.6491
46 1 2.2176 -10.9500 4.9613
47 1 2.5708 -9.5306 6.0844
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000905692026.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:13:37
Heat of formation + Delta-G solvation = -109.473400 kcal
Electronic energy + Delta-G solvation = -22378.577318 eV
Core-core repulsion = 18981.540029 eV
Total energy + Delta-G solvation = -3397.037290 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 286.204 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-39.86178 -39.47848 -37.56547 -36.63148 -35.95214 -34.63042 -32.59692 -30.72156
-29.02525 -27.71037 -26.28481 -24.61328 -23.23368 -22.74670 -22.43693 -21.80439
-21.65124 -18.58400 -17.78760 -17.34221 -17.29017 -16.83758 -16.65688 -16.33632
-16.25978 -15.89458 -15.49377 -15.10186 -15.01559 -14.60317 -14.41047 -13.89119
-13.74178 -13.56177 -13.41776 -13.15371 -12.82354 -12.68000 -12.55612 -12.52210
-12.40866 -12.38370 -12.04584 -11.94771 -11.79732 -11.62411 -11.47023 -11.40075
-11.11982 -10.88995 -10.63389 -10.59867 -9.38150 -8.97530 -8.21706 -6.31611
1.40638 1.41166 1.55371 2.39795 2.76074 2.91268 3.10705 3.36733
3.62212 3.67214 3.69888 3.94828 3.99000 4.07081 4.10750 4.14424
4.20218 4.27242 4.38999 4.49265 4.52367 4.57326 4.67754 4.70897
4.72721 4.78308 4.79059 4.80201 5.02211 5.05328 5.13550 5.15111
5.16500 5.21865 5.24444 5.31619 5.33863 5.64271 6.00065 6.05338
6.31100 6.45322 6.62386 6.84652 6.85073 6.94024 7.38177 8.89512
Molecular weight = 286.20amu
Principal moments of inertia in cm(-1)
A = 0.053520 B = 0.002058 C = 0.002039
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 523.039898 B =13602.728566 C =13726.262918
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.040 3.960
2 N -0.540 5.540
3 C 0.207 3.793
4 C -0.523 4.523
5 H 0.061 0.939
6 C 0.000 4.000
7 N -0.935 5.935
8 Si 0.971 3.029
9 H -0.264 1.264
10 H -0.278 1.278
11 H -0.277 1.277
12 C 0.024 3.976
13 C 0.129 3.871
14 H 0.095 0.905
15 O -0.559 6.559
16 C 0.038 3.962
17 N -0.690 5.690
18 C 0.064 3.936
19 C -0.135 4.135
20 C 0.143 3.857
21 H 0.089 0.911
22 O -0.574 6.574
23 C -0.195 4.195
24 C -0.175 4.175
25 C -0.171 4.171
26 H 0.011 0.989
27 H 0.055 0.945
28 H 0.076 0.924
29 H -0.039 1.039
30 H 0.004 0.996
31 H 0.265 0.735
32 H 0.032 0.968
33 H 0.068 0.932
34 H 0.379 0.621
35 H 0.079 0.921
36 H 0.039 0.961
37 H 0.348 0.652
38 H 0.031 0.969
39 H 0.064 0.936
40 H 0.079 0.921
41 H 0.074 0.926
42 H 0.387 0.613
43 H 0.113 0.887
44 H 0.096 0.904
45 H 0.104 0.896
46 H 0.102 0.898
47 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.311 -26.827 10.515 28.844
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 N -0.264 5.264
3 C 0.080 3.920
4 C -0.561 4.561
5 H 0.080 0.920
6 C -0.198 4.198
7 N -0.576 5.576
8 Si 0.796 3.204
9 H -0.188 1.188
10 H -0.203 1.203
11 H -0.203 1.203
12 C -0.105 4.105
13 C 0.069 3.931
14 H 0.113 0.887
15 O -0.365 6.365
16 C -0.092 4.092
17 N -0.323 5.323
18 C -0.065 4.065
19 C -0.173 4.173
20 C 0.084 3.916
21 H 0.107 0.893
22 O -0.382 6.382
23 C -0.213 4.213
24 C -0.212 4.212
25 C -0.208 4.208
26 H 0.030 0.970
27 H 0.074 0.926
28 H 0.095 0.905
29 H -0.021 1.021
30 H 0.022 0.978
31 H 0.073 0.927
32 H 0.050 0.950
33 H 0.086 0.914
34 H 0.227 0.773
35 H 0.098 0.902
36 H 0.057 0.943
37 H 0.167 0.833
38 H 0.050 0.950
39 H 0.082 0.918
40 H 0.097 0.903
41 H 0.092 0.908
42 H 0.236 0.764
43 H 0.131 0.869
44 H 0.114 0.886
45 H 0.122 0.878
46 H 0.120 0.880
47 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -2.469 -26.641 10.718 28.822
hybrid contribution 1.292 1.226 -0.202 1.793
sum -1.177 -25.414 10.516 27.529
Atomic orbital electron populations
1.22238 0.87839 1.01118 0.99675 1.61943 1.07997 1.14885 1.41599
1.19406 0.93653 0.83940 0.94962 1.21505 1.34759 0.97497 1.02379
0.92044 1.25937 0.95028 0.98046 1.00803 1.70091 1.39429 1.11891
1.36144 0.85304 0.78102 0.78134 0.78890 1.18844 1.20327 1.20291
1.22834 1.00224 0.95398 0.92062 1.21779 0.97737 0.88747 0.84794
0.88724 1.86570 1.24077 1.83663 1.42194 1.22481 0.98938 0.89434
0.98339 1.60361 1.64538 1.01595 1.05759 1.21882 0.98059 0.93446
0.93094 1.22131 1.02928 0.93762 0.98451 1.21372 0.80639 0.91726
0.97911 0.89281 1.86562 1.18501 1.85352 1.47758 1.23072 1.05264
0.96016 0.96959 1.23046 0.91991 1.03891 1.02288 1.22893 0.98550
0.99175 1.00144 0.97036 0.92584 0.90524 1.02138 0.97776 0.92670
0.94968 0.91393 0.77313 0.90229 0.94267 0.83251 0.95040 0.91796
0.90272 0.90752 0.76422 0.86901 0.88601 0.87806 0.87978 0.89192
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.59 9.14 127.69 1.17 2.75 16
2 N -0.54 -23.91 4.70 -927.07 -4.36 -28.27 16
3 C 0.21 11.27 4.72 85.56 0.40 11.67 16
4 C -0.52 -30.39 8.46 25.60 0.22 -30.17 16
5 H 0.06 3.54 7.12 -2.91 -0.02 3.52 16
6 C 0.00 -0.02 5.46 84.65 0.46 0.44 16
7 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16
8 Si 0.97 44.99 29.54 68.60 2.03 47.02 16
9 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16
10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16
11 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16
12 C 0.02 0.84 4.60 86.31 0.40 1.23 16
13 C 0.13 3.61 3.19 30.59 0.10 3.70 16
14 H 0.09 2.84 6.34 -2.39 -0.02 2.82 16
15 O -0.56 -16.18 12.62 -148.98 -1.88 -18.06 16
16 C 0.04 0.85 5.39 86.30 0.47 1.31 16
17 N -0.69 -13.85 6.50 -513.88 -3.34 -17.19 16
18 C 0.06 1.09 5.58 86.30 0.48 1.57 16
19 C -0.13 -1.77 5.14 30.59 0.16 -1.61 16
20 C 0.14 1.82 3.16 30.59 0.10 1.92 16
21 H 0.09 1.28 7.90 -2.38 -0.02 1.26 16
22 O -0.57 -8.30 12.78 -148.98 -1.90 -10.20 16
23 C -0.19 -2.12 5.36 -10.79 -0.06 -2.18 16
24 C -0.18 -1.82 10.18 30.62 0.31 -1.51 16
25 C -0.17 -1.86 10.16 30.62 0.31 -1.54 16
26 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16
27 H 0.06 2.43 6.76 -2.39 -0.02 2.42 16
28 H 0.08 2.62 6.37 -2.38 -0.02 2.60 16
29 H -0.04 -2.30 8.12 -2.39 -0.02 -2.32 16
30 H 0.00 0.24 7.93 -2.38 -0.02 0.22 16
31 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16
32 H 0.03 1.11 8.12 -2.39 -0.02 1.09 16
33 H 0.07 2.35 7.93 -2.39 -0.02 2.34 16
34 H 0.38 8.73 9.05 -74.05 -0.67 8.06 16
35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16
36 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16
37 H 0.35 6.82 8.12 -89.69 -0.73 6.09 16
38 H 0.03 0.57 7.82 -2.39 -0.02 0.55 16
39 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16
40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16
41 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16
42 H 0.39 3.15 9.04 -74.06 -0.67 2.48 16
43 H 0.11 1.08 8.11 -2.39 -0.02 1.06 16
44 H 0.10 0.99 8.05 -2.39 -0.02 0.97 16
45 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16
46 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16
47 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16
Total: -1.00 -68.22 379.67 -5.78 -74.00
By element:
Atomic # 1 Polarization: 22.83 SS G_CDS: -1.11 Total: 21.72 kcal
Atomic # 6 Polarization: -16.91 SS G_CDS: 4.51 Total: -12.40 kcal
Atomic # 7 Polarization: -94.65 SS G_CDS: -7.41 Total: -102.07 kcal
Atomic # 8 Polarization: -24.48 SS G_CDS: -3.78 Total: -28.26 kcal
Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal
Total: -68.22 -5.78 -74.00 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000905692026.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.478 kcal
(2) G-P(sol) polarization free energy of solvation -68.220 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.698 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.776 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.995 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.473 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds