Wall clock time and date at job start Tue Mar 31 2020 02:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99995 * 2 1 4 4 C 1.52993 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.71214 * 182.08423 * 4 3 2 6 6 C 1.53296 * 109.68164 * 302.62315 * 4 3 2 7 7 O 1.42963 * 109.21969 * 172.02601 * 6 4 3 8 8 C 1.42962 * 114.16519 * 297.41275 * 7 6 4 9 9 C 1.52886 * 109.29755 * 62.45706 * 8 7 6 10 10 N 1.47153 * 108.60196 * 307.93407 * 9 8 7 11 11 C 1.34780 * 120.97794 * 230.50066 * 10 9 8 12 12 O 1.21582 * 120.00008 * 185.40160 * 11 10 9 13 13 N 1.34780 * 119.99873 * 5.40231 * 11 10 9 14 14 C 1.46503 * 119.99544 * 174.91354 * 13 11 10 15 15 C 1.53001 * 109.46885 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47298 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47410 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99938 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00232 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99933 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99913 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.46865 * 270.00176 * 21 19 17 23 23 H 1.48492 * 109.47340 * 29.99984 * 21 19 17 24 24 H 1.48503 * 109.47108 * 150.00136 * 21 19 17 25 25 H 1.08998 * 109.46882 * 60.00256 * 1 2 3 26 26 H 1.08997 * 109.46887 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47034 * 299.99729 * 1 2 3 28 28 H 1.08995 * 109.46904 * 59.99561 * 3 2 1 29 29 H 1.08998 * 109.46556 * 300.00416 * 3 2 1 30 30 H 1.08997 * 109.51208 * 291.94320 * 6 4 3 31 31 H 1.08997 * 109.51474 * 52.10357 * 6 4 3 32 32 H 1.09005 * 109.51408 * 182.50535 * 8 7 6 33 33 H 1.08998 * 109.51933 * 302.66057 * 8 7 6 34 34 H 1.08999 * 109.61608 * 188.11343 * 9 8 7 35 35 H 1.09001 * 109.52479 * 67.69599 * 9 8 7 36 36 H 0.96999 * 119.99983 * 354.91304 * 13 11 10 37 37 H 1.09000 * 109.47064 * 60.00479 * 14 13 11 38 38 H 1.08996 * 109.46961 * 299.99818 * 14 13 11 39 39 H 1.09007 * 109.47193 * 59.99949 * 15 14 13 40 40 H 1.09000 * 109.47235 * 300.00262 * 15 14 13 41 41 H 1.08999 * 109.47364 * 59.99566 * 16 15 14 42 42 H 1.09000 * 109.47080 * 300.00220 * 16 15 14 43 43 H 0.96996 * 119.99671 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9829 2.1779 0.0380 6 6 3.9882 0.3684 1.2167 7 8 5.3889 0.1031 1.1103 8 6 5.7506 -0.6857 -0.0258 9 6 5.3868 0.0716 -1.3032 10 7 3.9779 0.4873 -1.2173 11 6 3.1167 0.2319 -2.2221 12 8 1.9828 0.6682 -2.1767 13 7 3.5126 -0.5073 -3.2773 14 6 2.5472 -0.8788 -4.3148 15 6 3.2492 -1.7099 -5.3906 16 6 2.2412 -2.0974 -6.4744 17 6 2.9325 -2.9164 -7.5337 18 1 3.9857 -3.1381 -7.4432 19 6 2.2208 -3.3820 -8.6189 20 7 2.8244 -4.0964 -9.5437 21 14 0.3995 -2.9981 -8.7758 22 1 -0.3905 -4.0671 -8.1135 23 1 0.1106 -1.6945 -8.1261 24 1 0.0304 -2.9277 -10.2125 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6885 1.8463 -0.8900 30 1 3.7929 0.9339 2.1278 31 1 3.4406 -0.5735 1.2473 32 1 6.8233 -0.8786 -0.0086 33 1 5.2094 -1.6314 0.0003 34 1 5.5257 -0.5792 -2.1665 35 1 6.0238 0.9509 -1.3993 36 1 4.4366 -0.7932 -3.3499 37 1 2.1331 0.0231 -4.7655 38 1 1.7430 -1.4647 -3.8697 39 1 3.6637 -2.6118 -4.9401 40 1 4.0532 -1.1236 -5.8356 41 1 1.8271 -1.1953 -6.9247 42 1 1.4370 -2.6835 -6.0297 43 1 2.3236 -4.4243 -10.3069 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916743381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:20 Heat of formation + Delta-G solvation = -122.234320 kcal Electronic energy + Delta-G solvation = -23777.111840 eV Core-core repulsion = 20243.688101 eV Total energy + Delta-G solvation = -3533.423739 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.80989 -39.50287 -38.51174 -36.95031 -35.75308 -35.16387 -33.63621 -32.64331 -29.75860 -28.52804 -27.69739 -26.42750 -24.80744 -23.90907 -22.76696 -22.18068 -20.66959 -19.16500 -18.78741 -17.83580 -17.58335 -17.03803 -16.59337 -16.42541 -16.33589 -16.31272 -16.21154 -15.75755 -15.29887 -15.20289 -14.75699 -14.60672 -14.36053 -13.78422 -13.54569 -13.52985 -13.08402 -12.77817 -12.69244 -12.52569 -12.43945 -12.04688 -11.89415 -11.82401 -11.73205 -11.59243 -11.32576 -11.21186 -10.82603 -10.76071 -10.16261 -9.89530 -9.39393 -8.29365 -6.33152 1.36872 1.38450 1.50340 1.52858 2.23482 2.36480 2.81805 2.86876 3.02665 3.06452 3.69268 3.90657 3.95159 4.10974 4.13096 4.21527 4.25349 4.30311 4.40964 4.50158 4.55392 4.58938 4.63920 4.78883 4.81649 4.87365 4.89995 4.90921 4.95742 4.98990 5.04132 5.40642 5.49458 5.56097 5.59563 5.65981 5.89535 6.08690 6.27657 6.37063 6.74655 6.98380 7.31701 7.64298 8.87089 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.023199 B = 0.003547 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.668768 B = 7892.460948 C = 8780.499116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.398 6.398 3 C 0.060 3.940 4 C 0.132 3.868 5 H 0.105 0.895 6 C 0.059 3.941 7 O -0.390 6.390 8 C 0.047 3.953 9 C 0.073 3.927 10 N -0.631 5.631 11 C 0.708 3.292 12 O -0.603 6.603 13 N -0.739 5.739 14 C 0.152 3.848 15 C -0.099 4.099 16 C -0.010 4.010 17 C -0.530 4.530 18 H 0.038 0.962 19 C 0.005 3.995 20 N -0.950 5.950 21 Si 0.947 3.053 22 H -0.267 1.267 23 H -0.248 1.248 24 H -0.284 1.284 25 H 0.026 0.974 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.125 0.875 31 H 0.050 0.950 32 H 0.133 0.867 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.403 0.597 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.021 0.979 42 H 0.019 0.981 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.852 11.900 24.605 27.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.317 6.317 3 C -0.017 4.017 4 C 0.028 3.972 5 H 0.123 0.877 6 C -0.018 4.018 7 O -0.308 6.308 8 C -0.030 4.030 9 C -0.050 4.050 10 N -0.370 5.370 11 C 0.410 3.590 12 O -0.483 6.483 13 N -0.397 5.397 14 C 0.028 3.972 15 C -0.137 4.137 16 C -0.048 4.048 17 C -0.568 4.568 18 H 0.056 0.944 19 C -0.192 4.192 20 N -0.591 5.591 21 Si 0.771 3.229 22 H -0.192 1.192 23 H -0.172 1.172 24 H -0.210 1.210 25 H 0.045 0.955 26 H 0.097 0.903 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.143 0.857 31 H 0.069 0.931 32 H 0.150 0.850 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.241 0.759 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.039 0.961 42 H 0.037 0.963 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.243 12.014 24.607 27.475 hybrid contribution -0.625 -0.334 -1.021 1.243 sum 1.617 11.680 23.586 26.370 Atomic orbital electron populations 1.22560 0.80733 1.02243 0.99612 1.87754 1.20294 1.28247 1.95386 1.22801 0.91343 0.86286 1.01251 1.22041 0.94179 0.96859 0.84097 0.87716 1.23010 0.81497 0.99688 0.97634 1.87936 1.23957 1.72782 1.46131 1.23028 1.02908 0.92792 0.84259 1.22468 0.81130 1.01217 1.00136 1.47274 1.10019 1.62364 1.17324 1.15956 0.84010 0.79009 0.80004 1.90784 1.20413 1.57360 1.79740 1.45328 1.13949 1.57007 1.23408 1.21056 0.91020 0.98021 0.87112 1.21469 0.98673 0.98864 0.94680 1.19445 0.95656 0.95884 0.93856 1.21460 0.96698 1.32536 1.06129 0.94414 1.25975 1.03583 0.94422 0.95196 1.70059 1.38708 1.37971 1.12372 0.85703 0.79572 0.80231 0.77441 1.19240 1.17177 1.20991 0.95479 0.90257 0.92875 0.91967 0.90921 0.85717 0.93129 0.84954 0.93342 0.88381 0.88966 0.75893 0.92845 0.93051 0.91938 0.91839 0.96108 0.96295 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.03 10.78 113.37 1.22 2.25 16 2 O -0.40 -10.57 7.87 -126.29 -0.99 -11.57 16 3 C 0.06 1.32 4.69 71.98 0.34 1.66 16 4 C 0.13 2.52 3.48 44.96 0.16 2.68 16 5 H 0.11 1.65 8.14 -2.39 -0.02 1.64 16 6 C 0.06 1.00 6.22 72.08 0.45 1.45 16 7 O -0.39 -6.85 10.74 -148.98 -1.60 -8.45 16 8 C 0.05 0.67 6.97 71.94 0.50 1.18 16 9 C 0.07 1.11 6.61 86.22 0.57 1.68 16 10 N -0.63 -13.86 3.01 -812.17 -2.45 -16.31 16 11 C 0.71 20.47 7.75 179.05 1.39 21.86 16 12 O -0.60 -20.82 11.05 18.71 0.21 -20.62 16 13 N -0.74 -20.29 5.47 -478.53 -2.62 -22.90 16 14 C 0.15 4.98 5.68 86.38 0.49 5.47 16 15 C -0.10 -3.62 5.27 30.59 0.16 -3.46 16 16 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 17 C -0.53 -30.18 9.66 25.60 0.25 -29.93 16 18 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 19 C 0.01 0.30 5.47 84.65 0.46 0.76 16 20 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 21 Si 0.95 44.49 27.47 68.60 1.88 46.37 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.25 -10.92 6.54 99.48 0.65 -10.27 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 25 H 0.03 0.70 8.04 -2.39 -0.02 0.68 16 26 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 2.02 5.79 -8.33 -0.05 1.97 16 30 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.05 7.40 -2.39 -0.02 1.03 16 32 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.10 1.29 5.66 -2.39 -0.01 1.28 16 35 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.40 8.92 5.98 -92.71 -0.55 8.37 16 37 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 40 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 42 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 43 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -72.64 338.59 1.19 -71.45 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.35 Total: 15.92 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 6.11 Total: 5.23 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -4.77 Total: -98.35 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -2.39 Total: -40.63 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.37 kcal Total: -72.64 1.19 -71.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916743381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.780 kcal (2) G-P(sol) polarization free energy of solvation -72.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds