Wall clock time and date at job start Tue Mar 31 2020 02:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99851 * 2 1 4 4 C 1.53000 * 109.47294 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47376 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.46970 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00129 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99809 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99780 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.46636 * 325.03085 * 9 8 6 11 11 C 1.53043 * 109.46200 * 85.00409 * 9 8 6 12 12 C 1.53186 * 109.31798 * 181.38681 * 11 9 8 13 13 N 1.46932 * 108.77261 * 305.36126 * 12 11 9 14 14 C 1.36931 * 120.63466 * 233.58684 * 13 12 11 15 15 H 1.07992 * 120.00780 * 151.82713 * 14 13 12 16 16 C 1.38813 * 119.99692 * 331.83003 * 14 13 12 17 17 N 1.31624 * 120.00229 * 343.08346 * 16 14 13 18 18 Si 1.86799 * 120.00106 * 163.08487 * 16 14 13 19 19 H 1.48505 * 109.47168 * 60.00066 * 18 16 14 20 20 H 1.48502 * 109.47373 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47318 * 299.99792 * 18 16 14 22 22 C 1.46931 * 118.73600 * 53.60881 * 13 12 11 23 23 C 1.53039 * 109.45911 * 205.06604 * 9 8 6 24 24 H 1.08998 * 109.50282 * 298.56883 * 23 9 8 25 25 O 1.42899 * 109.49665 * 58.66789 * 23 9 8 26 26 H 1.09004 * 109.46739 * 60.00364 * 1 2 3 27 27 H 1.08995 * 109.47149 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46945 * 300.00005 * 1 2 3 29 29 H 1.09002 * 109.47475 * 300.00083 * 3 2 1 30 30 H 1.09003 * 109.47081 * 60.00162 * 3 2 1 31 31 H 1.09002 * 109.47070 * 300.00505 * 4 3 2 32 32 H 1.08998 * 109.47038 * 59.99749 * 4 3 2 33 33 H 1.09001 * 109.46870 * 299.99871 * 5 4 3 34 34 H 1.08995 * 109.46880 * 60.00336 * 5 4 3 35 35 H 0.96994 * 120.00092 * 0.02562 * 8 6 5 36 36 H 1.09005 * 109.49307 * 301.33582 * 11 9 8 37 37 H 1.09005 * 109.50063 * 61.43000 * 11 9 8 38 38 H 1.08997 * 109.58923 * 65.14502 * 12 11 9 39 39 H 1.08999 * 109.59094 * 185.57799 * 12 11 9 40 40 H 0.97001 * 120.00406 * 180.02562 * 17 16 14 41 41 H 1.08993 * 109.58709 * 66.18116 * 22 13 12 42 42 H 1.09003 * 109.58597 * 186.46469 * 22 13 12 43 43 H 0.96700 * 113.99904 * 180.02562 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1577 2.5825 0.0013 6 6 5.6601 2.4634 0.0026 7 8 6.1817 1.3685 0.0024 8 7 6.4240 3.5738 0.0028 9 6 7.8844 3.4581 0.0034 10 1 8.1797 2.5900 0.5927 11 6 8.3834 3.2924 -1.4338 12 6 9.9074 3.1370 -1.4264 13 7 10.4955 4.2779 -0.7112 14 6 11.4677 5.0431 -1.2980 15 1 11.5777 6.0813 -1.0220 16 6 12.3119 4.4842 -2.2476 17 7 12.4135 3.1759 -2.3495 18 14 13.3039 5.5890 -3.3812 19 1 14.1984 6.4542 -2.5709 20 1 14.1212 4.7528 -4.2967 21 1 12.3813 6.4381 -4.1767 22 6 10.0209 4.5817 0.6457 23 6 8.4956 4.7209 0.6149 24 1 8.2213 5.5865 0.0120 25 8 8.0053 4.8915 1.9463 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 1.6886 1.8463 0.8900 31 1 3.8567 0.6439 0.8908 32 1 3.8575 0.6436 -0.8891 33 1 3.8365 3.1236 -0.8887 34 1 3.8358 3.1230 0.8913 35 1 6.0068 4.4494 0.0025 36 1 7.9295 2.4057 -1.8765 37 1 8.1102 4.1715 -2.0175 38 1 10.1777 2.2101 -0.9206 39 1 10.2778 3.1180 -2.4513 40 1 13.0037 2.7853 -3.0128 41 1 10.3005 3.7726 1.3203 42 1 10.4681 5.5147 0.9889 43 1 8.3517 5.6746 2.3956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099704596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:25 Heat of formation + Delta-G solvation = -122.151946 kcal Electronic energy + Delta-G solvation = -23116.330218 eV Core-core repulsion = 19582.910051 eV Total energy + Delta-G solvation = -3533.420167 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.80284 -38.29412 -37.83665 -35.41287 -34.32255 -33.68695 -31.92359 -30.08693 -28.72149 -27.88354 -26.03577 -24.86928 -22.59366 -22.17817 -21.45722 -20.09726 -19.40543 -17.38325 -16.92758 -16.54437 -16.53002 -16.36043 -15.76976 -15.24835 -15.05058 -14.81463 -14.01866 -13.89314 -13.75665 -13.45868 -13.17865 -12.82651 -12.44967 -12.24962 -12.19795 -11.95375 -11.90426 -11.56666 -11.23453 -11.11244 -11.04662 -10.86731 -10.67407 -10.34564 -10.27280 -9.95361 -9.93357 -9.80033 -9.70719 -9.38505 -8.72451 -8.44806 -6.77340 -5.85288 -3.30107 2.88441 3.21959 3.34557 3.40724 3.41440 3.70128 4.36434 4.51233 4.72138 4.76749 4.87595 5.02847 5.06635 5.17923 5.21246 5.27872 5.30987 5.34380 5.36004 5.46802 5.50466 5.56475 5.77543 5.96504 5.98317 6.12483 6.14802 6.33767 6.48092 6.54101 6.67076 6.77233 6.89504 6.90252 7.28959 7.60357 7.71962 7.77969 7.90922 8.37376 8.49841 9.12581 9.74897 10.31148 11.23251 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.030517 B = 0.003020 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.312608 B = 9270.763801 C = 9807.463535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.061 3.939 4 C -0.104 4.104 5 C -0.137 4.137 6 C 0.510 3.490 7 O -0.541 6.541 8 N -0.718 5.718 9 C 0.162 3.838 10 H 0.087 0.913 11 C -0.146 4.146 12 C 0.171 3.829 13 N -0.588 5.588 14 C -0.261 4.261 15 H 0.066 0.934 16 C 0.005 3.995 17 N -0.899 5.899 18 Si 0.905 3.095 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.283 1.283 22 C 0.121 3.879 23 C 0.080 3.920 24 H 0.056 0.944 25 O -0.571 6.571 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.395 0.605 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.024 0.976 39 H 0.093 0.907 40 H 0.256 0.744 41 H 0.029 0.971 42 H 0.060 0.940 43 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.204 2.022 4.817 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.015 4.015 4 C -0.142 4.142 5 C -0.177 4.177 6 C 0.296 3.704 7 O -0.418 6.418 8 N -0.367 5.367 9 C 0.058 3.942 10 H 0.105 0.895 11 C -0.186 4.186 12 C 0.045 3.955 13 N -0.312 5.312 14 C -0.390 4.390 15 H 0.084 0.916 16 C -0.194 4.194 17 N -0.542 5.542 18 Si 0.735 3.265 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.210 1.210 22 C -0.007 4.007 23 C 0.019 3.981 24 H 0.074 0.926 25 O -0.376 6.376 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.229 0.771 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.042 0.958 39 H 0.111 0.889 40 H 0.067 0.933 41 H 0.047 0.953 42 H 0.078 0.922 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -19.901 0.405 4.559 20.420 hybrid contribution 0.428 1.796 -0.479 1.908 sum -19.472 2.201 4.080 20.017 Atomic orbital electron populations 1.22738 0.81144 1.02756 0.99869 1.87905 1.19579 1.28113 1.95391 1.22570 0.94293 0.84605 1.00044 1.21217 0.91816 0.96076 1.05112 1.21535 0.92763 0.99123 1.04290 1.20477 0.89144 0.84559 0.76215 1.90723 1.75030 1.26571 1.49437 1.46101 1.07433 1.08473 1.74734 1.20988 0.77754 0.97991 0.97460 0.89498 1.22597 1.00864 1.01132 0.94057 1.20831 0.86088 0.88975 0.99614 1.44037 1.42971 1.33956 1.10249 1.19105 1.08444 0.91753 1.19709 0.91608 1.25093 0.97318 0.95524 1.01473 1.70024 1.39475 1.08996 1.35740 0.86337 0.79691 0.79764 0.80741 1.20819 1.21541 1.20957 1.21528 0.90505 0.99451 0.89235 1.22773 0.96437 0.96595 0.82270 0.92645 1.86480 1.72096 1.50399 1.28590 0.94127 0.89648 0.94133 0.93287 0.93315 0.90254 0.90199 0.88965 0.88951 0.77134 0.91938 0.92409 0.95794 0.88911 0.93346 0.95349 0.92188 0.78037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.31 10.70 -35.23 -0.38 -4.69 16 3 C 0.06 0.56 5.94 37.16 0.22 0.78 16 4 C -0.10 -1.17 4.87 -26.73 -0.13 -1.30 16 5 C -0.14 -1.38 5.70 -27.88 -0.16 -1.54 16 6 C 0.51 7.68 7.79 -10.99 -0.09 7.59 16 7 O -0.54 -10.58 15.64 5.55 0.09 -10.49 16 8 N -0.72 -10.47 4.92 -53.77 -0.26 -10.74 16 9 C 0.16 2.93 2.12 -67.89 -0.14 2.78 16 10 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 11 C -0.15 -2.89 5.65 -26.61 -0.15 -3.04 16 12 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 13 N -0.59 -14.43 2.99 -172.32 -0.52 -14.94 16 14 C -0.26 -6.96 9.58 -15.06 -0.14 -7.11 16 15 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 16 C 0.01 0.14 4.92 -17.43 -0.09 0.06 16 17 N -0.90 -25.91 11.20 55.49 0.62 -25.28 16 18 Si 0.91 21.26 29.59 -169.99 -5.03 16.23 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.12 2.45 6.14 -3.71 -0.02 2.43 16 23 C 0.08 1.36 3.14 -26.61 -0.08 1.27 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 O -0.57 -8.44 13.16 -35.23 -0.46 -8.91 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 32 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.40 4.61 8.60 -40.82 -0.35 4.26 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 2.47 6.06 -51.93 -0.31 2.16 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 43 H 0.37 3.93 9.08 45.56 0.41 4.34 16 LS Contribution 351.05 15.07 5.29 5.29 Total: -1.00 -33.18 351.05 -6.86 -40.04 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -6.52 Total: 6.12 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 0.31 Total: 7.37 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.16 Total: -50.97 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.75 Total: -24.08 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.18 -6.86 -40.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099704596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.110 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds