Wall clock time and date at job start Tue Mar 31 2020 02:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99851 * 2 1 4 4 C 1.53000 * 109.47294 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47376 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.46970 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00129 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99809 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99780 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.46636 * 325.03085 * 9 8 6 11 11 C 1.53043 * 109.46200 * 85.00409 * 9 8 6 12 12 C 1.53186 * 109.31798 * 181.38681 * 11 9 8 13 13 N 1.46932 * 108.77261 * 305.36126 * 12 11 9 14 14 C 1.36931 * 120.63466 * 233.58684 * 13 12 11 15 15 H 1.07992 * 120.00780 * 151.82713 * 14 13 12 16 16 C 1.38813 * 119.99692 * 331.83003 * 14 13 12 17 17 N 1.31624 * 120.00229 * 343.08346 * 16 14 13 18 18 Si 1.86799 * 120.00106 * 163.08487 * 16 14 13 19 19 H 1.48505 * 109.47168 * 60.00066 * 18 16 14 20 20 H 1.48502 * 109.47373 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47318 * 299.99792 * 18 16 14 22 22 C 1.46931 * 118.73600 * 53.60881 * 13 12 11 23 23 C 1.53039 * 109.45911 * 205.06604 * 9 8 6 24 24 H 1.08998 * 109.50282 * 298.56883 * 23 9 8 25 25 O 1.42899 * 109.49665 * 58.66789 * 23 9 8 26 26 H 1.09004 * 109.46739 * 60.00364 * 1 2 3 27 27 H 1.08995 * 109.47149 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46945 * 300.00005 * 1 2 3 29 29 H 1.09002 * 109.47475 * 300.00083 * 3 2 1 30 30 H 1.09003 * 109.47081 * 60.00162 * 3 2 1 31 31 H 1.09002 * 109.47070 * 300.00505 * 4 3 2 32 32 H 1.08998 * 109.47038 * 59.99749 * 4 3 2 33 33 H 1.09001 * 109.46870 * 299.99871 * 5 4 3 34 34 H 1.08995 * 109.46880 * 60.00336 * 5 4 3 35 35 H 0.96994 * 120.00092 * 0.02562 * 8 6 5 36 36 H 1.09005 * 109.49307 * 301.33582 * 11 9 8 37 37 H 1.09005 * 109.50063 * 61.43000 * 11 9 8 38 38 H 1.08997 * 109.58923 * 65.14502 * 12 11 9 39 39 H 1.08999 * 109.59094 * 185.57799 * 12 11 9 40 40 H 0.97001 * 120.00406 * 180.02562 * 17 16 14 41 41 H 1.08993 * 109.58709 * 66.18116 * 22 13 12 42 42 H 1.09003 * 109.58597 * 186.46469 * 22 13 12 43 43 H 0.96700 * 113.99904 * 180.02562 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1577 2.5825 0.0013 6 6 5.6601 2.4634 0.0026 7 8 6.1817 1.3685 0.0024 8 7 6.4240 3.5738 0.0028 9 6 7.8844 3.4581 0.0034 10 1 8.1797 2.5900 0.5927 11 6 8.3834 3.2924 -1.4338 12 6 9.9074 3.1370 -1.4264 13 7 10.4955 4.2779 -0.7112 14 6 11.4677 5.0431 -1.2980 15 1 11.5777 6.0813 -1.0220 16 6 12.3119 4.4842 -2.2476 17 7 12.4135 3.1759 -2.3495 18 14 13.3039 5.5890 -3.3812 19 1 14.1984 6.4542 -2.5709 20 1 14.1212 4.7528 -4.2967 21 1 12.3813 6.4381 -4.1767 22 6 10.0209 4.5817 0.6457 23 6 8.4956 4.7209 0.6149 24 1 8.2213 5.5865 0.0120 25 8 8.0053 4.8915 1.9463 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 1.6886 1.8463 0.8900 31 1 3.8567 0.6439 0.8908 32 1 3.8575 0.6436 -0.8891 33 1 3.8365 3.1236 -0.8887 34 1 3.8358 3.1230 0.8913 35 1 6.0068 4.4494 0.0025 36 1 7.9295 2.4057 -1.8765 37 1 8.1102 4.1715 -2.0175 38 1 10.1777 2.2101 -0.9206 39 1 10.2778 3.1180 -2.4513 40 1 13.0037 2.7853 -3.0128 41 1 10.3005 3.7726 1.3203 42 1 10.4681 5.5147 0.9889 43 1 8.3517 5.6746 2.3956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099704596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:24 Heat of formation + Delta-G solvation = -149.168023 kcal Electronic energy + Delta-G solvation = -23117.501723 eV Core-core repulsion = 19582.910051 eV Total energy + Delta-G solvation = -3534.591672 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.10991 -39.52256 -38.79087 -36.97521 -35.75814 -34.62089 -33.73986 -31.77366 -30.27103 -28.78941 -27.16115 -26.27575 -24.13043 -23.66787 -22.64885 -21.42943 -20.91586 -18.96757 -18.12442 -18.01028 -17.39948 -17.27286 -17.06818 -16.65997 -16.21009 -15.84486 -15.70516 -15.43913 -15.05423 -14.77916 -14.58751 -14.39637 -13.86436 -13.62209 -13.27854 -13.07060 -12.97886 -12.92806 -12.68159 -12.60326 -12.37507 -12.14376 -12.06494 -11.95278 -11.89122 -11.86697 -11.38957 -11.09176 -10.80282 -10.58413 -10.56152 -9.99607 -8.77261 -7.90775 -5.39174 1.48363 1.50890 1.57892 1.71236 2.15861 2.48990 2.92850 3.13286 3.26543 3.62745 3.75618 3.88917 4.00878 4.06861 4.18101 4.22858 4.36847 4.39979 4.50519 4.53168 4.53848 4.56396 4.61216 4.68386 4.75066 4.84550 4.88004 4.97646 5.02674 5.11692 5.14042 5.27118 5.36409 5.53836 5.59315 5.64520 6.28786 6.33098 6.64420 6.89222 7.08694 7.35838 7.77013 8.30186 9.16478 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.030517 B = 0.003020 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.312608 B = 9270.763801 C = 9807.463535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.427 6.427 3 C 0.064 3.936 4 C -0.103 4.103 5 C -0.122 4.122 6 C 0.503 3.497 7 O -0.595 6.595 8 N -0.704 5.704 9 C 0.168 3.832 10 H 0.050 0.950 11 C -0.128 4.128 12 C 0.179 3.821 13 N -0.604 5.604 14 C -0.266 4.266 15 H 0.078 0.922 16 C -0.053 4.053 17 N -0.938 5.938 18 Si 0.973 3.027 19 H -0.273 1.273 20 H -0.298 1.298 21 H -0.274 1.274 22 C 0.116 3.884 23 C 0.104 3.896 24 H 0.076 0.924 25 O -0.570 6.570 26 H 0.053 0.947 27 H 0.091 0.909 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.416 0.584 36 H 0.055 0.945 37 H 0.072 0.928 38 H -0.012 1.012 39 H 0.062 0.938 40 H 0.251 0.749 41 H 0.008 0.992 42 H 0.076 0.924 43 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.664 5.018 5.207 23.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.347 6.347 3 C -0.012 4.012 4 C -0.142 4.142 5 C -0.161 4.161 6 C 0.291 3.709 7 O -0.475 6.475 8 N -0.355 5.355 9 C 0.063 3.937 10 H 0.068 0.932 11 C -0.168 4.168 12 C 0.053 3.947 13 N -0.328 5.328 14 C -0.396 4.396 15 H 0.096 0.904 16 C -0.248 4.248 17 N -0.584 5.584 18 Si 0.800 3.200 19 H -0.198 1.198 20 H -0.225 1.225 21 H -0.199 1.199 22 C -0.011 4.011 23 C 0.043 3.957 24 H 0.094 0.906 25 O -0.378 6.378 26 H 0.071 0.929 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.253 0.747 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.006 0.994 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.026 0.974 42 H 0.095 0.905 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -22.410 3.475 4.991 23.221 hybrid contribution 1.183 0.822 -0.496 1.524 sum -21.227 4.297 4.495 22.120 Atomic orbital electron populations 1.22922 0.79317 1.03671 1.01109 1.87857 1.21707 1.29421 1.95684 1.22587 0.92302 0.84348 1.01954 1.21164 0.93910 0.96413 1.02677 1.21530 0.88184 0.98974 1.07420 1.21461 0.91305 0.83555 0.74561 1.90713 1.76406 1.28699 1.51705 1.45870 1.05687 1.09670 1.74300 1.20588 0.80213 0.97415 0.95521 0.93209 1.22306 0.97362 1.01356 0.95803 1.20545 0.89007 0.87808 0.97357 1.44254 1.43012 1.33568 1.11993 1.19539 1.08208 0.92448 1.19404 0.90434 1.25935 0.98931 0.96673 1.03257 1.70208 1.40700 1.10922 1.36525 0.85262 0.78232 0.77855 0.78603 1.19811 1.22487 1.19927 1.21715 0.93287 0.99338 0.86730 1.22281 0.93328 0.96362 0.83753 0.90585 1.86451 1.71720 1.52116 1.27472 0.92872 0.89091 0.92806 0.91297 0.91257 0.92773 0.92777 0.85577 0.85636 0.74748 0.92674 0.90958 0.99407 0.91924 0.94025 0.97367 0.90525 0.75388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.43 -8.90 10.70 -148.98 -1.59 -10.49 16 3 C 0.06 1.02 5.94 71.98 0.43 1.45 16 4 C -0.10 -2.22 4.87 30.59 0.15 -2.07 16 5 C -0.12 -2.07 5.70 29.85 0.17 -1.90 16 6 C 0.50 14.52 7.79 87.66 0.68 15.20 16 7 O -0.59 -23.94 15.64 -3.04 -0.05 -23.98 16 8 N -0.70 -19.03 4.92 -442.41 -2.18 -21.20 16 9 C 0.17 5.99 2.12 45.02 0.10 6.08 16 10 H 0.05 2.17 7.58 -2.39 -0.02 2.15 16 11 C -0.13 -5.11 5.65 30.67 0.17 -4.94 16 12 C 0.18 9.02 5.30 86.36 0.46 9.48 16 13 N -0.60 -29.93 2.99 -699.10 -2.09 -32.03 16 14 C -0.27 -14.18 9.58 84.03 0.81 -13.37 16 15 H 0.08 3.88 7.88 -2.91 -0.02 3.86 16 16 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 17 N -0.94 -56.11 11.20 21.65 0.24 -55.87 16 18 Si 0.97 43.92 29.59 68.60 2.03 45.95 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 22 C 0.12 4.64 6.14 86.36 0.53 5.17 16 23 C 0.10 3.29 3.14 30.67 0.10 3.38 16 24 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 25 O -0.57 -15.04 13.16 -148.98 -1.96 -17.00 16 26 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 1.41 8.10 -2.39 -0.02 1.39 16 32 H 0.05 1.41 8.10 -2.39 -0.02 1.39 16 33 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.42 8.00 8.60 -92.71 -0.80 7.20 16 36 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 37 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 38 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 39 H 0.06 3.51 6.06 -2.39 -0.01 3.50 16 40 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 41 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.08 2.78 7.93 -2.39 -0.02 2.76 16 43 H 0.40 6.74 9.08 -74.06 -0.67 6.07 16 Total: -1.00 -76.34 351.05 -0.81 -77.16 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -0.47 Total: 19.91 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 5.25 Total: 17.57 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -4.03 Total: -109.10 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -3.60 Total: -51.48 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -76.34 -0.81 -77.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099704596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.012 kcal (2) G-P(sol) polarization free energy of solvation -76.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds