Wall clock time and date at job start Tue Mar 31 2020 02:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99984 * 2 1 4 4 C 1.53000 * 109.47197 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47216 * 180.02562 * 4 3 2 6 6 C 1.50708 * 109.46863 * 179.97438 * 5 4 3 7 7 O 1.21274 * 120.00044 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99609 * 179.97438 * 6 5 4 9 9 C 1.46494 * 119.99860 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.46236 * 324.97423 * 9 8 6 11 11 C 1.53040 * 109.45931 * 84.93467 * 9 8 6 12 12 C 1.53194 * 109.31287 * 181.38450 * 11 9 8 13 13 N 1.46931 * 108.77631 * 305.36729 * 12 11 9 14 14 C 1.36937 * 120.62784 * 233.61082 * 13 12 11 15 15 H 1.07995 * 120.00275 * 27.67202 * 14 13 12 16 16 C 1.38817 * 119.99667 * 207.67910 * 14 13 12 17 17 N 1.31619 * 120.00022 * 17.35916 * 16 14 13 18 18 Si 1.86794 * 119.99665 * 197.36986 * 16 14 13 19 19 H 1.48506 * 109.47537 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47569 * 119.99637 * 18 16 14 21 21 H 1.48503 * 109.46894 * 239.99438 * 18 16 14 22 22 C 1.46927 * 118.73891 * 53.60563 * 13 12 11 23 23 C 1.53044 * 109.46007 * 205.00364 * 9 8 6 24 24 H 1.08996 * 109.49874 * 58.66563 * 23 9 8 25 25 O 1.42903 * 109.49735 * 298.56507 * 23 9 8 26 26 H 1.09005 * 109.46590 * 60.00128 * 1 2 3 27 27 H 1.09000 * 109.46805 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47270 * 299.99930 * 1 2 3 29 29 H 1.09002 * 109.47018 * 60.00165 * 3 2 1 30 30 H 1.09001 * 109.47471 * 299.99459 * 3 2 1 31 31 H 1.09005 * 109.47409 * 59.99738 * 4 3 2 32 32 H 1.09004 * 109.47263 * 299.99812 * 4 3 2 33 33 H 1.08995 * 109.46765 * 60.00112 * 5 4 3 34 34 H 1.08993 * 109.46753 * 299.99527 * 5 4 3 35 35 H 0.97001 * 119.99862 * 0.02562 * 8 6 5 36 36 H 1.08998 * 109.49952 * 301.33315 * 11 9 8 37 37 H 1.08997 * 109.49870 * 61.43581 * 11 9 8 38 38 H 1.09001 * 109.58832 * 65.14906 * 12 11 9 39 39 H 1.09000 * 109.58799 * 185.57874 * 12 11 9 40 40 H 0.97003 * 119.99445 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.58431 * 186.60241 * 22 13 12 42 42 H 1.09004 * 109.58351 * 66.18168 * 22 13 12 43 43 H 0.96693 * 113.99758 * 180.02562 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1578 2.5824 0.0013 6 6 5.6601 2.4634 0.0026 7 8 6.1816 1.3685 0.0024 8 7 6.4240 3.5737 0.0028 9 6 7.8844 3.4580 0.0046 10 1 8.1793 2.5907 0.5953 11 6 8.3843 3.2899 -1.4321 12 6 9.9083 3.1346 -1.4233 13 7 10.4960 4.2766 -0.7097 14 6 11.4682 5.0411 -1.2973 15 1 11.5096 5.1290 -2.3729 16 6 12.4008 5.7031 -0.5105 17 7 12.5775 5.3439 0.7434 18 14 13.4046 7.1039 -1.2311 19 1 13.0194 7.3100 -2.6504 20 1 13.1437 8.3470 -0.4616 21 1 14.8491 6.7683 -1.1543 22 6 10.0205 4.5828 0.6464 23 6 8.4952 4.7218 0.6145 24 1 8.1206 4.8536 1.6295 25 8 8.1362 5.8554 -0.1781 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6886 1.8463 0.8900 30 1 1.6887 1.8464 -0.8900 31 1 3.8575 0.6435 -0.8891 32 1 3.8567 0.6439 0.8909 33 1 3.8357 3.1230 0.8913 34 1 3.8366 3.1235 -0.8887 35 1 6.0068 4.4494 0.0025 36 1 7.9308 2.4025 -1.8736 37 1 8.1115 4.1680 -2.0173 38 1 10.1784 2.2085 -0.9158 39 1 10.2794 3.1139 -2.4480 40 1 13.2289 5.8068 1.2933 41 1 10.4656 5.5175 0.9873 42 1 10.2997 3.7747 1.3226 43 1 8.4903 6.6931 0.1504 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099704597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:27 Heat of formation + Delta-G solvation = -120.756929 kcal Electronic energy + Delta-G solvation = -23231.430702 eV Core-core repulsion = 19698.071028 eV Total energy + Delta-G solvation = -3533.359675 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.83570 -38.30653 -37.84685 -34.80049 -34.33047 -33.72539 -32.05303 -29.61728 -29.09202 -27.95223 -26.05478 -24.84287 -22.61136 -22.13637 -21.45500 -20.04654 -19.32652 -17.43829 -16.99060 -16.57357 -16.39431 -15.99946 -15.42905 -15.32211 -15.07087 -14.88640 -13.94903 -13.92855 -13.71644 -13.57321 -13.21599 -12.80568 -12.38603 -12.27513 -12.07490 -11.98389 -11.93075 -11.27536 -11.25628 -11.14044 -11.08255 -10.81956 -10.58121 -10.47713 -10.17628 -10.03987 -9.96088 -9.78344 -9.55786 -9.17933 -8.67809 -8.50201 -6.69341 -5.82553 -3.22908 2.81759 3.19642 3.34411 3.43301 3.46107 3.68340 4.47064 4.66094 4.73281 4.83400 4.84831 5.00552 5.04320 5.15440 5.18412 5.24902 5.31646 5.33136 5.39979 5.46282 5.49106 5.58502 5.93182 5.96069 6.03965 6.10575 6.22036 6.30352 6.47322 6.57046 6.79663 6.86980 6.88026 6.98864 7.16821 7.42130 7.75927 7.79201 8.22790 8.41746 8.45147 9.16950 9.80168 10.37049 11.26280 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.051649 B = 0.002846 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.985791 B = 9836.721438 C = 9958.349222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.061 3.939 4 C -0.104 4.104 5 C -0.138 4.138 6 C 0.508 3.492 7 O -0.543 6.543 8 N -0.720 5.720 9 C 0.162 3.838 10 H 0.089 0.911 11 C -0.136 4.136 12 C 0.147 3.853 13 N -0.583 5.583 14 C -0.241 4.241 15 H 0.066 0.934 16 C -0.003 4.003 17 N -0.907 5.907 18 Si 0.903 3.097 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.291 1.291 22 C 0.145 3.855 23 C 0.073 3.927 24 H 0.043 0.957 25 O -0.560 6.560 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.401 0.599 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.020 0.980 39 H 0.057 0.943 40 H 0.253 0.747 41 H 0.096 0.904 42 H 0.027 0.973 43 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.866 -2.429 0.754 21.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.015 4.015 4 C -0.142 4.142 5 C -0.178 4.178 6 C 0.294 3.706 7 O -0.421 6.421 8 N -0.370 5.370 9 C 0.058 3.942 10 H 0.107 0.893 11 C -0.176 4.176 12 C 0.021 3.979 13 N -0.306 5.306 14 C -0.370 4.370 15 H 0.084 0.916 16 C -0.201 4.201 17 N -0.553 5.553 18 Si 0.733 3.267 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.218 1.218 22 C 0.018 3.982 23 C 0.012 3.988 24 H 0.061 0.939 25 O -0.365 6.365 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.235 0.765 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.114 0.886 42 H 0.045 0.955 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -20.540 -3.782 0.503 20.891 hybrid contribution 0.428 1.897 0.114 1.948 sum -20.112 -1.885 0.617 20.210 Atomic orbital electron populations 1.22740 0.81113 1.02763 0.99894 1.87900 1.19608 1.28107 1.95398 1.22572 0.94273 0.84616 1.00088 1.21217 0.91850 0.96050 1.05060 1.21546 0.92749 0.99119 1.04383 1.20539 0.89223 0.84599 0.76258 1.90710 1.75080 1.26613 1.49673 1.46230 1.07599 1.08707 1.74479 1.20997 0.77713 0.97286 0.98230 0.89264 1.22290 0.98692 1.01037 0.95562 1.20903 0.90049 0.90320 0.96669 1.43896 1.42467 1.30058 1.14136 1.19228 1.04352 1.21975 0.91493 0.91612 1.25026 0.97216 1.01166 0.96643 1.70035 1.36468 1.41200 1.07549 0.86209 0.79697 0.82249 0.78554 1.20277 1.21647 1.21822 1.21444 0.87354 1.02160 0.87265 1.22835 0.98846 0.85461 0.91663 0.93940 1.86342 1.76848 1.17229 1.56108 0.94111 0.89641 0.94119 0.93295 0.93263 0.90235 0.90271 0.88962 0.88876 0.76470 0.92917 0.91268 0.96233 0.92453 0.93707 0.88616 0.95467 0.77857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.16 10.70 -35.23 -0.38 -4.54 16 3 C 0.06 0.54 5.94 37.16 0.22 0.76 16 4 C -0.10 -1.11 4.87 -26.73 -0.13 -1.24 16 5 C -0.14 -1.32 5.70 -27.88 -0.16 -1.48 16 6 C 0.51 7.29 7.79 -10.98 -0.09 7.20 16 7 O -0.54 -10.06 15.65 5.56 0.09 -9.97 16 8 N -0.72 -10.31 5.05 -53.76 -0.27 -10.59 16 9 C 0.16 2.86 2.20 -67.89 -0.15 2.71 16 10 H 0.09 1.74 7.58 -51.93 -0.39 1.34 16 11 C -0.14 -2.58 5.51 -26.61 -0.15 -2.73 16 12 C 0.15 3.22 6.52 -3.71 -0.02 3.19 16 13 N -0.58 -14.38 2.94 -172.31 -0.51 -14.89 16 14 C -0.24 -6.50 9.59 -15.06 -0.14 -6.65 16 15 H 0.07 1.78 7.89 -52.49 -0.41 1.36 16 16 C 0.00 -0.08 4.91 -17.43 -0.09 -0.16 16 17 N -0.91 -25.65 11.19 55.49 0.62 -25.03 16 18 Si 0.90 21.32 29.59 -169.99 -5.03 16.29 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 C 0.14 3.29 4.95 -3.71 -0.02 3.27 16 23 C 0.07 1.31 3.38 -26.61 -0.09 1.22 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 O -0.56 -9.69 12.09 -35.23 -0.43 -10.11 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 32 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.40 4.89 8.26 -40.82 -0.34 4.56 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.38 7.61 -51.93 -0.40 0.98 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 40 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.10 2.37 6.04 -51.93 -0.31 2.06 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.37 5.62 9.08 45.56 0.41 6.04 16 LS Contribution 349.34 15.07 5.26 5.26 Total: -1.00 -32.34 349.34 -6.81 -39.16 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.48 Total: 6.99 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 0.30 Total: 7.43 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.16 Total: -50.51 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.72 Total: -24.63 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.34 -6.81 -39.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099704597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.599 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds