Wall clock time and date at job start Tue Mar 31 2020 02:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99984 * 2 1 4 4 C 1.53000 * 109.47197 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47216 * 180.02562 * 4 3 2 6 6 C 1.50708 * 109.46863 * 179.97438 * 5 4 3 7 7 O 1.21274 * 120.00044 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99609 * 179.97438 * 6 5 4 9 9 C 1.46494 * 119.99860 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.46236 * 324.97423 * 9 8 6 11 11 C 1.53040 * 109.45931 * 84.93467 * 9 8 6 12 12 C 1.53194 * 109.31287 * 181.38450 * 11 9 8 13 13 N 1.46931 * 108.77631 * 305.36729 * 12 11 9 14 14 C 1.36937 * 120.62784 * 233.61082 * 13 12 11 15 15 H 1.07995 * 120.00275 * 27.67202 * 14 13 12 16 16 C 1.38817 * 119.99667 * 207.67910 * 14 13 12 17 17 N 1.31619 * 120.00022 * 17.35916 * 16 14 13 18 18 Si 1.86794 * 119.99665 * 197.36986 * 16 14 13 19 19 H 1.48506 * 109.47537 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47569 * 119.99637 * 18 16 14 21 21 H 1.48503 * 109.46894 * 239.99438 * 18 16 14 22 22 C 1.46927 * 118.73891 * 53.60563 * 13 12 11 23 23 C 1.53044 * 109.46007 * 205.00364 * 9 8 6 24 24 H 1.08996 * 109.49874 * 58.66563 * 23 9 8 25 25 O 1.42903 * 109.49735 * 298.56507 * 23 9 8 26 26 H 1.09005 * 109.46590 * 60.00128 * 1 2 3 27 27 H 1.09000 * 109.46805 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47270 * 299.99930 * 1 2 3 29 29 H 1.09002 * 109.47018 * 60.00165 * 3 2 1 30 30 H 1.09001 * 109.47471 * 299.99459 * 3 2 1 31 31 H 1.09005 * 109.47409 * 59.99738 * 4 3 2 32 32 H 1.09004 * 109.47263 * 299.99812 * 4 3 2 33 33 H 1.08995 * 109.46765 * 60.00112 * 5 4 3 34 34 H 1.08993 * 109.46753 * 299.99527 * 5 4 3 35 35 H 0.97001 * 119.99862 * 0.02562 * 8 6 5 36 36 H 1.08998 * 109.49952 * 301.33315 * 11 9 8 37 37 H 1.08997 * 109.49870 * 61.43581 * 11 9 8 38 38 H 1.09001 * 109.58832 * 65.14906 * 12 11 9 39 39 H 1.09000 * 109.58799 * 185.57874 * 12 11 9 40 40 H 0.97003 * 119.99445 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.58431 * 186.60241 * 22 13 12 42 42 H 1.09004 * 109.58351 * 66.18168 * 22 13 12 43 43 H 0.96693 * 113.99758 * 180.02562 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1578 2.5824 0.0013 6 6 5.6601 2.4634 0.0026 7 8 6.1816 1.3685 0.0024 8 7 6.4240 3.5737 0.0028 9 6 7.8844 3.4580 0.0046 10 1 8.1793 2.5907 0.5953 11 6 8.3843 3.2899 -1.4321 12 6 9.9083 3.1346 -1.4233 13 7 10.4960 4.2766 -0.7097 14 6 11.4682 5.0411 -1.2973 15 1 11.5096 5.1290 -2.3729 16 6 12.4008 5.7031 -0.5105 17 7 12.5775 5.3439 0.7434 18 14 13.4046 7.1039 -1.2311 19 1 13.0194 7.3100 -2.6504 20 1 13.1437 8.3470 -0.4616 21 1 14.8491 6.7683 -1.1543 22 6 10.0205 4.5828 0.6464 23 6 8.4952 4.7218 0.6145 24 1 8.1206 4.8536 1.6295 25 8 8.1362 5.8554 -0.1781 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6886 1.8463 0.8900 30 1 1.6887 1.8464 -0.8900 31 1 3.8575 0.6435 -0.8891 32 1 3.8567 0.6439 0.8909 33 1 3.8357 3.1230 0.8913 34 1 3.8366 3.1235 -0.8887 35 1 6.0068 4.4494 0.0025 36 1 7.9308 2.4025 -1.8736 37 1 8.1115 4.1680 -2.0173 38 1 10.1784 2.2085 -0.9158 39 1 10.2794 3.1139 -2.4480 40 1 13.2289 5.8068 1.2933 41 1 10.4656 5.5175 0.9873 42 1 10.2997 3.7747 1.3226 43 1 8.4903 6.6931 0.1504 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099704597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:27 Heat of formation + Delta-G solvation = -146.282103 kcal Electronic energy + Delta-G solvation = -23232.537557 eV Core-core repulsion = 19698.071028 eV Total energy + Delta-G solvation = -3534.466529 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.10688 -39.54789 -38.79094 -36.48815 -35.71579 -34.61602 -33.84018 -31.27830 -30.72808 -28.79814 -27.13832 -26.25678 -24.15455 -23.62377 -22.62871 -21.27826 -20.84124 -19.15506 -18.12251 -17.53349 -17.28256 -17.16064 -17.04578 -16.66180 -16.21482 -15.83782 -15.62648 -15.39613 -15.18099 -14.94189 -14.56538 -14.31830 -13.78997 -13.65102 -13.22201 -13.02653 -12.94559 -12.77555 -12.64662 -12.57491 -12.36317 -12.23900 -12.00262 -11.94795 -11.86070 -11.81586 -11.44681 -10.87656 -10.70446 -10.59693 -10.58072 -9.97563 -8.68809 -7.88087 -5.32120 1.46939 1.50134 1.60594 1.69956 2.17198 2.51670 2.93451 3.24845 3.40634 3.62881 3.78164 3.89670 4.00574 4.04226 4.18939 4.35245 4.37975 4.41408 4.50623 4.54569 4.56848 4.60185 4.61294 4.70986 4.78044 4.88101 4.91436 4.96540 5.06400 5.14698 5.18100 5.27721 5.43086 5.55128 5.56340 5.65135 6.28762 6.36654 6.66155 6.92470 7.14293 7.34139 7.81954 8.35138 9.18527 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.051649 B = 0.002846 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.985791 B = 9836.721438 C = 9958.349222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.426 6.426 3 C 0.063 3.937 4 C -0.102 4.102 5 C -0.124 4.124 6 C 0.504 3.496 7 O -0.591 6.591 8 N -0.708 5.708 9 C 0.167 3.833 10 H 0.069 0.931 11 C -0.118 4.118 12 C 0.143 3.857 13 N -0.599 5.599 14 C -0.252 4.252 15 H 0.062 0.938 16 C -0.049 4.049 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.297 1.297 22 C 0.149 3.851 23 C 0.092 3.908 24 H 0.070 0.930 25 O -0.560 6.560 26 H 0.052 0.948 27 H 0.091 0.909 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.416 0.584 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.009 0.991 39 H 0.055 0.945 40 H 0.251 0.749 41 H 0.073 0.927 42 H 0.002 0.998 43 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.267 -0.811 0.441 23.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.346 6.346 3 C -0.013 4.013 4 C -0.140 4.140 5 C -0.163 4.163 6 C 0.292 3.708 7 O -0.471 6.471 8 N -0.360 5.360 9 C 0.062 3.938 10 H 0.087 0.913 11 C -0.158 4.158 12 C 0.017 3.983 13 N -0.322 5.322 14 C -0.383 4.383 15 H 0.079 0.921 16 C -0.244 4.244 17 N -0.583 5.583 18 Si 0.797 3.203 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.224 1.224 22 C 0.022 3.978 23 C 0.031 3.969 24 H 0.087 0.913 25 O -0.366 6.366 26 H 0.071 0.929 27 H 0.110 0.890 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.253 0.747 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.027 0.973 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.020 0.980 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -22.992 -2.134 0.182 23.091 hybrid contribution 1.180 1.314 0.203 1.777 sum -21.812 -0.821 0.385 21.831 Atomic orbital electron populations 1.22920 0.79357 1.03676 1.01072 1.87851 1.21659 1.29382 1.95678 1.22594 0.92483 0.84349 1.01879 1.21158 0.93735 0.96307 1.02830 1.21540 0.88428 0.99034 1.07329 1.21422 0.91192 0.83529 0.74631 1.90701 1.76323 1.28441 1.51667 1.46013 1.05892 1.09762 1.74296 1.20651 0.80056 0.96351 0.96778 0.91309 1.22053 0.96312 1.00888 0.96592 1.20981 0.92058 0.89146 0.96106 1.44123 1.42570 1.30695 1.14767 1.19458 1.04994 1.22266 0.91547 0.92051 1.25726 0.98401 1.03261 0.97037 1.70179 1.37191 1.42225 1.08680 0.85192 0.77604 0.79358 0.78135 1.19525 1.21100 1.22433 1.21345 0.90672 0.99943 0.85853 1.22474 0.95174 0.86000 0.93234 0.91257 1.86313 1.76532 1.17545 1.56249 0.92926 0.89047 0.92859 0.91328 0.91453 0.92651 0.92502 0.85648 0.85926 0.74683 0.92619 0.91552 0.97326 0.92625 0.93998 0.90829 0.98020 0.76484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.43 -8.47 10.70 -148.98 -1.59 -10.07 16 3 C 0.06 0.95 5.94 71.98 0.43 1.37 16 4 C -0.10 -2.04 4.87 30.60 0.15 -1.89 16 5 C -0.12 -1.98 5.70 29.85 0.17 -1.81 16 6 C 0.50 13.58 7.79 87.66 0.68 14.27 16 7 O -0.59 -21.90 15.65 -3.01 -0.05 -21.94 16 8 N -0.71 -18.68 5.05 -442.41 -2.23 -20.92 16 9 C 0.17 5.77 2.20 45.02 0.10 5.87 16 10 H 0.07 2.70 7.58 -2.39 -0.02 2.69 16 11 C -0.12 -4.45 5.51 30.67 0.17 -4.28 16 12 C 0.14 6.37 6.52 86.36 0.56 6.93 16 13 N -0.60 -29.95 2.94 -699.06 -2.05 -32.00 16 14 C -0.25 -13.75 9.59 84.03 0.81 -12.94 16 15 H 0.06 3.33 7.89 -2.91 -0.02 3.31 16 16 C -0.05 -2.68 4.91 84.86 0.42 -2.27 16 17 N -0.94 -53.82 11.19 21.65 0.24 -53.58 16 18 Si 0.97 43.98 29.59 68.60 2.03 46.01 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 21 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 22 C 0.15 6.84 4.95 86.36 0.43 7.26 16 23 C 0.09 3.21 3.38 30.67 0.10 3.31 16 24 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 25 O -0.56 -18.11 12.09 -148.98 -1.80 -19.91 16 26 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 27 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 1.35 8.10 -2.38 -0.02 1.33 16 32 H 0.06 1.37 8.10 -2.38 -0.02 1.35 16 33 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.42 8.64 8.26 -92.71 -0.77 7.88 16 36 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.07 2.55 7.61 -2.39 -0.02 2.53 16 38 H 0.01 0.40 8.14 -2.39 -0.02 0.39 16 39 H 0.06 2.43 7.93 -2.39 -0.02 2.41 16 40 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 41 H 0.07 3.71 6.04 -2.38 -0.01 3.69 16 42 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 43 H 0.39 10.75 9.08 -74.06 -0.67 10.07 16 Total: -1.00 -71.58 349.34 -0.63 -72.20 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -0.43 Total: 22.83 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 5.26 Total: 17.37 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -4.04 Total: -106.49 kcal Atomic # 8 Polarization: -48.48 SS G_CDS: -3.44 Total: -51.92 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -71.58 -0.63 -72.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099704597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.079 kcal (2) G-P(sol) polarization free energy of solvation -71.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds