Wall clock time and date at job start Tue Mar 31 2020 02:33:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42899 * 114.00438 * 2 1
4 4 H 1.09000 * 109.46878 * 30.00340 * 3 2 1
5 5 C 1.52996 * 109.47167 * 269.99986 * 3 2 1
6 6 C 1.50707 * 109.46984 * 150.00193 * 3 2 1
7 7 O 1.21282 * 120.00217 * 5.00086 * 6 3 2
8 8 N 1.34772 * 119.99501 * 185.00334 * 6 3 2
9 9 C 1.46502 * 119.99716 * 179.97438 * 8 6 3
10 10 C 1.53000 * 109.47269 * 179.97438 * 9 8 6
11 11 C 1.53000 * 109.55047 * 60.12739 * 10 9 8
12 12 C 1.53290 * 109.51494 * 180.25274 * 10 9 8
13 13 N 1.47232 * 108.40798 * 172.23175 * 12 10 9
14 14 C 1.36930 * 121.03328 * 129.46021 * 13 12 10
15 15 H 1.08002 * 120.00530 * 206.18598 * 14 13 12
16 16 C 1.38816 * 119.99608 * 26.18827 * 14 13 12
17 17 N 1.31615 * 120.00526 * 16.88476 * 16 14 13
18 18 Si 1.86806 * 119.99896 * 196.88547 * 16 14 13
19 19 H 1.48493 * 109.47161 * 89.99376 * 18 16 14
20 20 H 1.48497 * 109.47448 * 210.00216 * 18 16 14
21 21 H 1.48503 * 109.46954 * 330.00010 * 18 16 14
22 22 C 1.47154 * 117.98230 * 309.48797 * 13 12 10
23 23 C 1.53298 * 108.41825 * 50.51870 * 22 13 12
24 24 O 1.42959 * 109.51371 * 300.00367 * 10 9 8
25 25 H 1.08997 * 109.46567 * 300.00091 * 1 2 3
26 26 H 1.08998 * 109.46809 * 59.99466 * 1 2 3
27 27 H 1.08993 * 109.47098 * 179.97438 * 1 2 3
28 28 H 1.09000 * 109.47510 * 299.99967 * 5 3 2
29 29 H 1.09000 * 109.46747 * 60.00097 * 5 3 2
30 30 H 1.08997 * 109.47099 * 179.97438 * 5 3 2
31 31 H 0.97000 * 120.00195 * 359.97438 * 8 6 3
32 32 H 1.09002 * 109.46877 * 59.99845 * 9 8 6
33 33 H 1.08999 * 109.47195 * 299.99813 * 9 8 6
34 34 H 1.09000 * 109.47604 * 299.87595 * 11 10 9
35 35 H 1.09004 * 109.47201 * 59.87360 * 11 10 9
36 36 H 1.09000 * 109.47333 * 179.87598 * 11 10 9
37 37 H 1.09001 * 109.68414 * 291.94993 * 12 10 9
38 38 H 1.09001 * 109.68139 * 52.50357 * 12 10 9
39 39 H 0.97002 * 120.00383 * 180.02562 * 17 16 14
40 40 H 1.08997 * 109.68310 * 290.77188 * 22 13 12
41 41 H 1.09005 * 109.67869 * 170.25970 * 22 13 12
42 42 H 1.09001 * 109.51044 * 67.59999 * 23 22 13
43 43 H 1.09000 * 109.51036 * 187.70217 * 23 22 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 1 1.3451 1.9993 0.5139
5 6 2.2178 1.7713 -1.4425
6 6 3.3388 1.2637 0.7104
7 8 3.7898 0.2042 1.0913
8 7 4.0256 2.4038 0.9224
9 6 5.3167 2.3633 1.6135
10 6 5.8814 3.7811 1.7227
11 6 4.9105 4.6593 2.5145
12 6 7.2354 3.7392 2.4401
13 7 7.8420 5.0787 2.3669
14 6 8.3196 5.6997 3.4900
15 1 8.3651 6.7779 3.5329
16 6 8.7453 4.9433 4.5733
17 7 9.0071 3.6627 4.4197
18 14 8.9466 5.7432 6.2494
19 1 7.6694 5.6464 7.0007
20 1 10.0191 5.0471 7.0046
21 1 9.3113 7.1722 6.0754
22 6 7.9191 5.7307 1.0499
23 6 6.5317 5.6757 0.4003
24 8 6.0592 4.3265 0.4132
25 1 -0.3632 0.5138 0.8900
26 1 -0.3633 0.5139 -0.8899
27 1 -0.3633 -1.0276 -0.0005
28 1 2.8830 1.0774 -1.9563
29 1 1.2570 1.8014 -1.9562
30 1 2.6608 2.7672 -1.4424
31 1 3.6650 3.2510 0.6174
32 1 6.0105 1.7386 1.0509
33 1 5.1815 1.9478 2.6120
34 1 3.9493 4.6923 2.0016
35 1 4.7754 4.2429 3.5128
36 1 5.3150 5.6684 2.5934
37 1 7.0897 3.4590 3.4833
38 1 7.8870 3.0141 1.9523
39 1 9.3042 3.1341 5.1768
40 1 8.6395 5.2063 0.4222
41 1 8.2264 6.7694 1.1720
42 1 5.8425 6.3083 0.9596
43 1 6.5972 6.0295 -0.6286
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001107777275.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:33:45
Heat of formation + Delta-G solvation = -99.427662 kcal
Electronic energy + Delta-G solvation = -24097.300397 eV
Core-core repulsion = 20564.865629 eV
Total energy + Delta-G solvation = -3532.434768 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 286.173 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-40.00793 -38.98276 -37.55659 -34.90914 -34.33795 -32.39479 -31.29396 -30.99732
-27.97399 -27.01299 -26.56801 -25.73505 -23.70546 -23.23920 -21.26718 -20.25972
-18.75865 -17.56745 -17.18211 -16.80067 -15.81250 -15.80183 -15.25677 -15.00483
-14.66767 -14.49535 -14.23107 -14.01360 -13.55613 -13.46641 -13.12489 -12.89979
-12.80897 -12.64859 -12.36112 -12.05689 -11.82391 -11.61000 -11.33937 -11.21309
-11.03353 -10.84176 -10.69654 -10.33015 -10.25880 -10.14472 -9.99641 -9.61296
-9.43688 -9.06224 -8.82171 -8.55882 -6.76642 -5.86186 -3.29879 2.73775
2.93267 3.32855 3.39869 3.41525 3.89127 4.22551 4.41911 4.61094
4.77828 4.84212 5.05359 5.12646 5.13882 5.32210 5.35395 5.44825
5.45143 5.47135 5.51572 5.65701 5.88996 5.89920 5.91660 6.00953
6.08131 6.11924 6.29572 6.43138 6.55145 6.65742 6.73230 6.80098
6.85891 7.05241 7.44937 7.66938 7.69033 7.85441 8.30794 8.37635
9.08716 9.71843 10.29053 11.21753
Molecular weight = 286.17amu
Principal moments of inertia in cm(-1)
A = 0.025770 B = 0.003977 C = 0.003676
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1086.264245 B = 7038.932126 C = 7616.171419
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.360 6.360
3 C 0.070 3.930
4 H 0.084 0.916
5 C -0.170 4.170
6 C 0.509 3.491
7 O -0.524 6.524
8 N -0.715 5.715
9 C 0.141 3.859
10 C 0.078 3.922
11 C -0.162 4.162
12 C 0.159 3.841
13 N -0.591 5.591
14 C -0.255 4.255
15 H 0.068 0.932
16 C 0.004 3.996
17 N -0.901 5.901
18 Si 0.903 3.097
19 H -0.287 1.287
20 H -0.290 1.290
21 H -0.279 1.279
22 C 0.109 3.891
23 C 0.046 3.954
24 O -0.384 6.384
25 H 0.043 0.957
26 H 0.042 0.958
27 H 0.089 0.911
28 H 0.071 0.929
29 H 0.066 0.934
30 H 0.074 0.926
31 H 0.401 0.599
32 H 0.074 0.926
33 H 0.082 0.918
34 H 0.041 0.959
35 H 0.062 0.938
36 H 0.073 0.927
37 H 0.097 0.903
38 H 0.030 0.970
39 H 0.256 0.744
40 H 0.026 0.974
41 H 0.061 0.939
42 H 0.048 0.952
43 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.629 0.320 -9.457 18.270
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.278 6.278
3 C 0.008 3.992
4 H 0.102 0.898
5 C -0.227 4.227
6 C 0.293 3.707
7 O -0.399 6.399
8 N -0.368 5.368
9 C 0.017 3.983
10 C 0.037 3.963
11 C -0.219 4.219
12 C 0.033 3.967
13 N -0.314 5.314
14 C -0.384 4.384
15 H 0.086 0.914
16 C -0.195 4.195
17 N -0.545 5.545
18 Si 0.733 3.267
19 H -0.214 1.214
20 H -0.217 1.217
21 H -0.204 1.204
22 C -0.017 4.017
23 C -0.032 4.032
24 O -0.304 6.304
25 H 0.061 0.939
26 H 0.061 0.939
27 H 0.108 0.892
28 H 0.090 0.910
29 H 0.085 0.915
30 H 0.093 0.907
31 H 0.236 0.764
32 H 0.092 0.908
33 H 0.100 0.900
34 H 0.060 0.940
35 H 0.081 0.919
36 H 0.092 0.908
37 H 0.115 0.885
38 H 0.048 0.952
39 H 0.066 0.934
40 H 0.044 0.956
41 H 0.079 0.921
42 H 0.066 0.934
43 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -15.123 -0.837 -9.196 17.719
hybrid contribution -0.121 1.201 0.949 1.535
sum -15.244 0.364 -8.248 17.336
Atomic orbital electron populations
1.22867 0.80875 1.03125 0.99927 1.88061 1.19431 1.25342 1.94933
1.21946 0.93763 0.86623 0.96835 0.89800 1.22220 1.03167 1.02359
0.94983 1.20316 0.86173 0.84322 0.79874 1.90725 1.69315 1.29743
1.50160 1.45902 1.22016 1.09143 1.59769 1.21371 0.83200 0.96059
0.97651 1.22552 0.98303 0.91147 0.84265 1.22208 0.97489 1.02131
1.00092 1.21308 0.87529 0.87149 1.00738 1.44018 1.68447 1.16921
1.02063 1.19166 1.36691 0.90758 0.91834 0.91381 1.25044 0.98780
0.96208 0.99470 1.70010 1.47836 1.06555 1.30074 0.86274 0.77476
0.78671 0.84252 1.21365 1.21660 1.20441 1.21595 0.94135 0.97568
0.88444 1.23037 0.96671 0.83506 0.99981 1.87809 1.86727 1.28409
1.27428 0.93881 0.93940 0.89245 0.90986 0.91454 0.90664 0.76392
0.90771 0.90011 0.93989 0.91860 0.90789 0.88521 0.95204 0.93390
0.95649 0.92064 0.93395 0.90175
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.24 10.82 101.05 1.09 1.33 16
2 O -0.36 -4.71 9.89 -55.09 -0.54 -5.26 16
3 C 0.07 0.80 3.13 -27.88 -0.09 0.71 16
4 H 0.08 0.73 7.79 -51.93 -0.40 0.33 16
5 C -0.17 -1.56 9.48 37.16 0.35 -1.21 16
6 C 0.51 7.83 7.18 -10.98 -0.08 7.75 16
7 O -0.52 -10.52 16.51 -14.30 -0.24 -10.76 16
8 N -0.71 -10.22 5.12 -60.29 -0.31 -10.53 16
9 C 0.14 2.42 4.82 -4.04 -0.02 2.40 16
10 C 0.08 1.43 0.76 -90.47 -0.07 1.36 16
11 C -0.16 -2.69 7.92 37.16 0.29 -2.40 16
12 C 0.16 3.68 4.12 -3.49 -0.01 3.66 16
13 N -0.59 -14.22 2.57 -171.76 -0.44 -14.66 16
14 C -0.26 -6.72 9.65 -15.06 -0.15 -6.87 16
15 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16
16 C 0.00 0.11 4.95 -17.43 -0.09 0.02 16
17 N -0.90 -25.54 11.14 55.49 0.62 -24.92 16
18 Si 0.90 21.14 29.59 -169.99 -5.03 16.11 16
19 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16
20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16
22 C 0.11 2.20 6.73 -3.53 -0.02 2.18 16
23 C 0.05 0.77 6.60 37.31 0.25 1.02 16
24 O -0.38 -6.88 9.97 -35.23 -0.35 -7.23 16
25 H 0.04 0.31 8.08 -51.93 -0.42 -0.11 16
26 H 0.04 0.27 7.87 -51.93 -0.41 -0.14 16
27 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16
28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
29 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16
30 H 0.07 0.61 7.92 -51.93 -0.41 0.20 16
31 H 0.40 4.82 6.99 -40.82 -0.29 4.53 16
32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16
33 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16
34 H 0.04 0.57 6.88 -51.93 -0.36 0.21 16
35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
36 H 0.07 1.35 6.11 -51.93 -0.32 1.03 16
37 H 0.10 2.47 6.14 -51.93 -0.32 2.15 16
38 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16
39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16
40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16
41 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16
42 H 0.05 0.77 6.25 -51.93 -0.32 0.45 16
43 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16
LS Contribution 343.44 15.07 5.18 5.18
Total: -1.00 -32.31 343.44 -6.66 -38.96
By element:
Atomic # 1 Polarization: 10.13 SS G_CDS: -7.00 Total: 3.13 kcal
Atomic # 6 Polarization: 8.50 SS G_CDS: 1.46 Total: 9.97 kcal
Atomic # 7 Polarization: -49.98 SS G_CDS: -0.13 Total: -50.11 kcal
Atomic # 8 Polarization: -22.11 SS G_CDS: -1.13 Total: -23.24 kcal
Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal
Total LS contribution 5.18 Total: 5.18 kcal
Total: -32.31 -6.66 -38.96 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001107777275.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -60.463 kcal
(2) G-P(sol) polarization free energy of solvation -32.308 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.772 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.428 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds