Wall clock time and date at job start Tue Mar 31 2020 02:33:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42899 * 114.00438 * 2 1
4 4 H 1.09000 * 109.46878 * 30.00340 * 3 2 1
5 5 C 1.52996 * 109.47167 * 269.99986 * 3 2 1
6 6 C 1.50707 * 109.46984 * 150.00193 * 3 2 1
7 7 O 1.21282 * 120.00217 * 5.00086 * 6 3 2
8 8 N 1.34772 * 119.99501 * 185.00334 * 6 3 2
9 9 C 1.46502 * 119.99716 * 179.97438 * 8 6 3
10 10 C 1.53000 * 109.47269 * 179.97438 * 9 8 6
11 11 C 1.53000 * 109.55047 * 60.12739 * 10 9 8
12 12 C 1.53290 * 109.51494 * 180.25274 * 10 9 8
13 13 N 1.47232 * 108.40798 * 172.23175 * 12 10 9
14 14 C 1.36930 * 121.03328 * 129.46021 * 13 12 10
15 15 H 1.08002 * 120.00530 * 206.18598 * 14 13 12
16 16 C 1.38816 * 119.99608 * 26.18827 * 14 13 12
17 17 N 1.31615 * 120.00526 * 16.88476 * 16 14 13
18 18 Si 1.86806 * 119.99896 * 196.88547 * 16 14 13
19 19 H 1.48493 * 109.47161 * 89.99376 * 18 16 14
20 20 H 1.48497 * 109.47448 * 210.00216 * 18 16 14
21 21 H 1.48503 * 109.46954 * 330.00010 * 18 16 14
22 22 C 1.47154 * 117.98230 * 309.48797 * 13 12 10
23 23 C 1.53298 * 108.41825 * 50.51870 * 22 13 12
24 24 O 1.42959 * 109.51371 * 300.00367 * 10 9 8
25 25 H 1.08997 * 109.46567 * 300.00091 * 1 2 3
26 26 H 1.08998 * 109.46809 * 59.99466 * 1 2 3
27 27 H 1.08993 * 109.47098 * 179.97438 * 1 2 3
28 28 H 1.09000 * 109.47510 * 299.99967 * 5 3 2
29 29 H 1.09000 * 109.46747 * 60.00097 * 5 3 2
30 30 H 1.08997 * 109.47099 * 179.97438 * 5 3 2
31 31 H 0.97000 * 120.00195 * 359.97438 * 8 6 3
32 32 H 1.09002 * 109.46877 * 59.99845 * 9 8 6
33 33 H 1.08999 * 109.47195 * 299.99813 * 9 8 6
34 34 H 1.09000 * 109.47604 * 299.87595 * 11 10 9
35 35 H 1.09004 * 109.47201 * 59.87360 * 11 10 9
36 36 H 1.09000 * 109.47333 * 179.87598 * 11 10 9
37 37 H 1.09001 * 109.68414 * 291.94993 * 12 10 9
38 38 H 1.09001 * 109.68139 * 52.50357 * 12 10 9
39 39 H 0.97002 * 120.00383 * 180.02562 * 17 16 14
40 40 H 1.08997 * 109.68310 * 290.77188 * 22 13 12
41 41 H 1.09005 * 109.67869 * 170.25970 * 22 13 12
42 42 H 1.09001 * 109.51044 * 67.59999 * 23 22 13
43 43 H 1.09000 * 109.51036 * 187.70217 * 23 22 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 1 1.3451 1.9993 0.5139
5 6 2.2178 1.7713 -1.4425
6 6 3.3388 1.2637 0.7104
7 8 3.7898 0.2042 1.0913
8 7 4.0256 2.4038 0.9224
9 6 5.3167 2.3633 1.6135
10 6 5.8814 3.7811 1.7227
11 6 4.9105 4.6593 2.5145
12 6 7.2354 3.7392 2.4401
13 7 7.8420 5.0787 2.3669
14 6 8.3196 5.6997 3.4900
15 1 8.3651 6.7779 3.5329
16 6 8.7453 4.9433 4.5733
17 7 9.0071 3.6627 4.4197
18 14 8.9466 5.7432 6.2494
19 1 7.6694 5.6464 7.0007
20 1 10.0191 5.0471 7.0046
21 1 9.3113 7.1722 6.0754
22 6 7.9191 5.7307 1.0499
23 6 6.5317 5.6757 0.4003
24 8 6.0592 4.3265 0.4132
25 1 -0.3632 0.5138 0.8900
26 1 -0.3633 0.5139 -0.8899
27 1 -0.3633 -1.0276 -0.0005
28 1 2.8830 1.0774 -1.9563
29 1 1.2570 1.8014 -1.9562
30 1 2.6608 2.7672 -1.4424
31 1 3.6650 3.2510 0.6174
32 1 6.0105 1.7386 1.0509
33 1 5.1815 1.9478 2.6120
34 1 3.9493 4.6923 2.0016
35 1 4.7754 4.2429 3.5128
36 1 5.3150 5.6684 2.5934
37 1 7.0897 3.4590 3.4833
38 1 7.8870 3.0141 1.9523
39 1 9.3042 3.1341 5.1768
40 1 8.6395 5.2063 0.4222
41 1 8.2264 6.7694 1.1720
42 1 5.8425 6.3083 0.9596
43 1 6.5972 6.0295 -0.6286
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001107777275.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:33:44
Heat of formation + Delta-G solvation = -122.717729 kcal
Electronic energy + Delta-G solvation = -24098.310330 eV
Core-core repulsion = 20564.865629 eV
Total energy + Delta-G solvation = -3533.444701 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 286.173 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.27871 -40.38843 -38.55005 -36.53128 -35.92601 -33.61834 -33.20616 -32.07786
-29.56600 -28.08218 -27.67830 -27.35987 -25.02509 -24.68649 -22.86348 -21.46336
-20.31408 -18.99024 -18.55608 -17.96406 -17.31787 -16.98707 -16.71061 -16.15942
-16.13805 -15.78104 -15.59143 -15.53168 -15.21952 -14.74657 -14.59696 -14.22591
-14.06671 -13.58674 -13.41160 -13.27787 -13.16041 -12.91904 -12.79653 -12.72033
-12.51955 -12.44542 -12.12899 -12.09258 -11.95219 -11.83687 -11.16415 -11.03019
-10.76984 -10.51608 -10.48744 -10.15024 -8.72084 -7.89344 -5.36378 1.46552
1.47841 1.55391 1.56619 1.85655 2.48069 2.77924 3.04032 3.25505
3.50298 3.66580 3.91338 3.95243 4.02379 4.06949 4.11688 4.43395
4.47868 4.48841 4.56846 4.58062 4.64017 4.71054 4.72396 4.79297
4.83734 4.88291 4.97716 5.05306 5.13217 5.21296 5.22601 5.33874
5.37112 5.53943 5.61850 6.08970 6.29391 6.37537 6.55619 7.06919
7.21049 7.76482 8.30497 9.16228
Molecular weight = 286.17amu
Principal moments of inertia in cm(-1)
A = 0.025770 B = 0.003977 C = 0.003676
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1086.264245 B = 7038.932126 C = 7616.171419
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.022 3.978
2 O -0.399 6.399
3 C 0.075 3.925
4 H 0.120 0.880
5 C -0.164 4.164
6 C 0.504 3.496
7 O -0.580 6.580
8 N -0.699 5.699
9 C 0.149 3.851
10 C 0.095 3.905
11 C -0.153 4.153
12 C 0.167 3.833
13 N -0.607 5.607
14 C -0.258 4.258
15 H 0.075 0.925
16 C -0.050 4.050
17 N -0.937 5.937
18 Si 0.967 3.033
19 H -0.283 1.283
20 H -0.299 1.299
21 H -0.266 1.266
22 C 0.101 3.899
23 C 0.053 3.947
24 O -0.384 6.384
25 H 0.054 0.946
26 H 0.065 0.935
27 H 0.094 0.906
28 H 0.050 0.950
29 H 0.094 0.906
30 H 0.090 0.910
31 H 0.417 0.583
32 H 0.052 0.948
33 H 0.071 0.929
34 H 0.081 0.919
35 H 0.054 0.946
36 H 0.062 0.938
37 H 0.066 0.934
38 H -0.009 1.009
39 H 0.250 0.750
40 H 0.011 0.989
41 H 0.072 0.928
42 H 0.063 0.937
43 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.340 2.558 -10.668 21.370
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 O -0.318 6.318
3 C 0.014 3.986
4 H 0.138 0.862
5 C -0.222 4.222
6 C 0.291 3.709
7 O -0.459 6.459
8 N -0.353 5.353
9 C 0.024 3.976
10 C 0.054 3.946
11 C -0.211 4.211
12 C 0.040 3.960
13 N -0.332 5.332
14 C -0.388 4.388
15 H 0.092 0.908
16 C -0.246 4.246
17 N -0.583 5.583
18 Si 0.795 3.205
19 H -0.210 1.210
20 H -0.226 1.226
21 H -0.191 1.191
22 C -0.024 4.024
23 C -0.024 4.024
24 O -0.303 6.303
25 H 0.072 0.928
26 H 0.084 0.916
27 H 0.113 0.887
28 H 0.069 0.931
29 H 0.113 0.887
30 H 0.109 0.891
31 H 0.255 0.745
32 H 0.070 0.930
33 H 0.089 0.911
34 H 0.100 0.900
35 H 0.073 0.927
36 H 0.081 0.919
37 H 0.084 0.916
38 H 0.009 0.991
39 H 0.059 0.941
40 H 0.029 0.971
41 H 0.090 0.910
42 H 0.081 0.919
43 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -17.871 1.464 -10.451 20.755
hybrid contribution 0.761 0.510 1.256 1.555
sum -17.110 1.975 -9.195 19.524
Atomic orbital electron populations
1.23102 0.78542 1.04164 1.01588 1.88017 1.22059 1.26484 1.95192
1.22037 0.91596 0.87060 0.97909 0.86243 1.22223 1.04360 1.02357
0.93245 1.21238 0.87431 0.83342 0.78937 1.90700 1.70949 1.31765
1.52512 1.45687 1.20616 1.09950 1.59023 1.21026 0.84413 0.94977
0.97136 1.22156 0.95873 0.92185 0.84363 1.22118 0.98582 1.00573
0.99785 1.21068 0.89642 0.86157 0.99138 1.44276 1.68670 1.17006
1.03201 1.19521 1.35480 0.91192 0.92632 0.90750 1.25800 0.99313
0.96672 1.02789 1.70186 1.49590 1.08004 1.30517 0.85272 0.76991
0.78190 0.80044 1.21012 1.22628 1.19068 1.21833 0.96487 0.97502
0.86628 1.23119 0.94225 0.83015 1.02085 1.87821 1.86525 1.29356
1.26632 0.92764 0.91595 0.88742 0.93084 0.88743 0.89146 0.74526
0.93004 0.91117 0.90041 0.92734 0.91877 0.91565 0.99141 0.94114
0.97118 0.90954 0.91896 0.86289
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.31 10.82 113.37 1.23 1.53 16
2 O -0.40 -9.81 9.89 -129.99 -1.29 -11.09 16
3 C 0.07 1.53 3.13 29.85 0.09 1.62 16
4 H 0.12 1.57 7.79 -2.39 -0.02 1.55 16
5 C -0.16 -2.50 9.48 71.98 0.68 -1.82 16
6 C 0.50 15.09 7.18 87.66 0.63 15.72 16
7 O -0.58 -23.89 16.51 15.95 0.26 -23.63 16
8 N -0.70 -18.93 5.12 -463.05 -2.37 -21.30 16
9 C 0.15 5.22 4.82 86.38 0.42 5.64 16
10 C 0.10 3.44 0.76 -10.70 -0.01 3.44 16
11 C -0.15 -4.79 7.92 71.98 0.57 -4.22 16
12 C 0.17 8.00 4.12 86.34 0.36 8.35 16
13 N -0.61 -29.55 2.57 -697.33 -1.79 -31.34 16
14 C -0.26 -13.68 9.65 84.04 0.81 -12.87 16
15 H 0.07 3.78 7.88 -2.91 -0.02 3.75 16
16 C -0.05 -2.76 4.95 84.86 0.42 -2.34 16
17 N -0.94 -55.34 11.14 21.65 0.24 -55.10 16
18 Si 0.97 44.00 29.59 68.60 2.03 46.03 16
19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16
20 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16
21 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16
22 C 0.10 3.97 6.73 86.35 0.58 4.55 16
23 C 0.05 1.60 6.60 72.08 0.48 2.08 16
24 O -0.38 -12.94 9.97 -148.98 -1.49 -14.43 16
25 H 0.05 0.63 8.08 -2.39 -0.02 0.61 16
26 H 0.07 0.61 7.87 -2.39 -0.02 0.59 16
27 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16
28 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16
29 H 0.09 0.95 7.87 -2.39 -0.02 0.93 16
30 H 0.09 1.10 7.92 -2.39 -0.02 1.08 16
31 H 0.42 8.58 6.99 -92.71 -0.65 7.93 16
32 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16
33 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16
34 H 0.08 1.89 6.88 -2.39 -0.02 1.88 16
35 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16
36 H 0.06 2.14 6.11 -2.39 -0.01 2.13 16
37 H 0.07 3.57 6.14 -2.39 -0.01 3.55 16
38 H -0.01 -0.52 8.14 -2.39 -0.02 -0.53 16
39 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16
40 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16
41 H 0.07 2.65 7.96 -2.38 -0.02 2.63 16
42 H 0.06 1.78 6.25 -2.39 -0.01 1.76 16
43 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16
Total: -1.00 -74.05 343.44 2.21 -71.85
By element:
Atomic # 1 Polarization: 16.99 SS G_CDS: 0.35 Total: 17.34 kcal
Atomic # 6 Polarization: 15.43 SS G_CDS: 6.25 Total: 21.68 kcal
Atomic # 7 Polarization: -103.82 SS G_CDS: -3.92 Total: -107.74 kcal
Atomic # 8 Polarization: -46.64 SS G_CDS: -2.51 Total: -49.15 kcal
Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal
Total: -74.05 2.21 -71.85 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001107777275.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -50.870 kcal
(2) G-P(sol) polarization free energy of solvation -74.054 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.924 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.206 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.848 kcal
(6) G-S(sol) free energy of system = (1) + (5) -122.718 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds